Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0026290 | OGI:05074940 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:28147173-28149875 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaagagctaactgtggaaaccatttcatattcacttgccttcctgttcttcgaacaaatgaagaaagcgcctccaaaccgctgctgaaggaacagaagaaccgacagcagtattgctccacatggtatggcaatgtcccatgcgaggctgaagagatcatcgcgagggtttgcatacctgtaaaatggtctcaagctgggcacaaaatgcttagccctgaacacatcatacacatgaggtagcgcacgaatcatggtgcttccaatgtaaaatcccggggaaagtgccttcactttggaacctaagcatgcgtttaagataacctgagggagcaagaacccgtcgagtattaatcccccatatgacacaaggtcctcccagaatgcatgtctattaacccgaggtaagcgagcaacctttctaagcatccttcggttgttgttaaattgcatgtgaacaacccaagctgcgactgcacctataatgtacagtggcaagcatatccaaagcactttcttctcagcagcccatgattgatctttgcttacatccatggaacgtgcggagcatgccaattgaagaagtcgtaactgcatcagaaaggttaccatggtaatgattcgcacaatgacttcattcacctcaagccaaccaccacctgaaagtggaaatgtctgtttgttactgttcttgaagagggcctcaaagttcaacacaagaggtatcatgtaacccaaagagagaactacaagcatggcgattgacatggcaggaagcgcttcaggaaccttcttgacatggaacagttgcacagcaatgaacaaacaggatagtgtcatcgagatcagggccatggtgctttccaagtccattctccagatcgactcatccactttgtctatgtacaacccatacgaagcaatgtccagcggttcaaagaaaagagggtcagtcttcttcctcaagcttctaattgtccccttgacatgctgtgctacttttgtatccaaaggagaaaactgagcagttacaagaatttcacagtccaacgagatattaaccacccgacaagcaatcatacacaaggagcctgtcttagcatcataaacaccctctgcagagatatgctgacggcgaaatgtttctagcgaccaattcccgacatagtgaatgtcatagctgacattaagtaacctatgattcgtctctttcattatatgataggaatgatctgaatcaaccaaagagttcccatcatatagcattgacccaattgtgactggtgatgcatatccagagccccctcctttctgcaagaagaaccggaatgttaagtcccgatatgaattgctatcagggaactttccctttctcttcttgttcaagccatacttctcataatacttctttgcctcatcaaccttggtgtagttatacttcagacccgaaagacttcccctaaagtatggagctattgtgttggagcttgcagctatgccctcaccgctcttcaggctcgtgttccagaccaaacctgcagcaaagttccgttcctgtagtgaccacacagcggggaaccagaagctcatcccaatcccacactcacccaccgccaaatccgcacgggatggtcccgaattcacaatgtgacaccctttgagacacagcctgctcctcttctcgtcccagaaaccctccactaccatggccttctcaccaagcataaagtagtacgccgatacatctgtctgattcgcgaacaccacataagctcgcactgcgccatcgtcggcacatcgcatccggttgatgaacatgaacctctggtgaagccccagcgatgaggcggtcgactcgctgctgccgttggtgtagtcgagcctgaacgtcgccttgaacagcgaactgaggtgtgcgcatgagaatttactaccttcgaacacctggagcgcgtcgagcctaccggtgggcggcggcgggcacgaggcgctctctgcgtacgcatatccctcctcggcgtaggtgacgagagagacgggctcgaagaagctgggggagtcggtgctctcgaggctgccggtgacgaaggggcgcgtcaggttggcgcggccggggtagcggacgcggagcacggcggagaggaggttcaccgccgtgccgtcggcggcgcggccggagccggtgccgaccatgcagagctcgccggaggccgacgagtagtacccctcgaggccgaacgtgacggagccgcggcggccggcgaagcgggggaggcgggggcggaagcggtgcgcctggccgtcgtactcgacgaggaggtgccgcccatcgttcggcggcctcctcctccggccgcccgacacggtgagcgtggcggagacgtggaggagggaggcgtcggtggtgcgcaccacggaggaggggaggaaggagaaggagcggggcgggatggagaggtcggggccgaacagccgcgccccgccgccggagaagtagccggtgttgagctggagggagaggcgcagcgaggtcggatcagcgcctccctcgccgccgccgcccgcgaggtcgggcgcggaggggaggccgtggcagtgatccgagtaggttgccgccgccgccaccgtggcagggaccagcaggaggagtacggcgacgaggaggaggtggttagggtttggatcgcggcgcggcggcgccat
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| CDS seq | atggcgccgccgcgccgcgatccaaaccctaaccacctcctcctcgtcgccgtactcctcctgctggtccctgccacggtggcggcggcggcaacctactcggatcactgccacggcctcccctccgcgcccgacctcgcgggcggcggcggcgagggaggcgctgatccgacctcgctgcgcctctccctccagctcaacaccggctacttctccggcggcggggcgcggctgttcggccccgacctctccatcccgccccgctccttctccttcctcccctcctccgtggtgcgcaccaccgacgcctccctcctccacgtctccgccacgctcaccgtgtcgggcggccggaggaggaggccgccgaacgatgggcggcacctcctcgtcgagtacgacggccaggcgcaccgcttccgcccccgcctcccccgcttcgccggccgccgcggctccgtcacgttcggcctcgaggggtactactcgtcggcctccggcgagctctgcatggtcggcaccggctccggccgcgccgccgacggcacggcggtgaacctcctctccgccgtgctccgcgtccgctaccccggccgcgccaacctgacgcgccccttcgtcaccggcagcctcgagagcaccgactcccccagcttcttcgagcccgtctctctcgtcacctacgccgaggagggatatgcgtacgcagagagcgcctcgtgcccgccgccgcccaccggtaggctcgacgcgctccaggtgttcgaaggtagtaaattctcatgcgcacacctcagttcgctgttcaaggcgacgttcaggctcgactacaccaacggcagcagcgagtcgaccgcctcatcgctggggcttcaccagaggttcatgttcatcaaccggatgcgatgtgccgacgatggcgcagtgcgagcttatgtggtgttcgcgaatcagacagatgtatcggcgtactactttatgcttggtgagaaggccatggtagtggagggtttctgggacgagaagaggagcaggctgtgtctcaaagggtgtcacattgtgaattcgggaccatcccgtgcggatttggcggtgggtgagtgtgggattgggatgagcttctggttccccgctgtgtggtcactacaggaacggaactttgctgcaggtttggtctggaacacgagcctgaagagcggtgagggcatagctgcaagctccaacacaatagctccatactttaggggaagtctttcgggtctgaagtataactacaccaaggttgatgaggcaaagaagtattatgagaagtatggcttgaacaagaagagaaagggaaagttccctgatagcaattcatatcgggacttaacattccggttcttcttgcagaaaggagggggctctggatatgcatcaccagtcacaattgggtcaatgctatatgatgggaactctttggttgattcagatcattcctatcatataatgaaagagacgaatcataggttacttaatgtcagctatgacattcactatgtcgggaattggtcgctagaaacatttcgccgtcagcatatctctgcagagggtgtttatgatgctaagacaggctccttgtgtatgattgcttgtcgggtggttaatatctcgttggactgtgaaattcttgtaactgctcagttttctcctttggatacaaaagtagcacagcatgtcaaggggacaattagaagcttgaggaagaagactgaccctcttttctttgaaccgctggacattgcttcgtatgggttgtacatagacaaagtggatgagtcgatctggagaatggacttggaaagcaccatggccctgatctcgatgacactatcctgtttgttcattgctgtgcaactgttccatgtcaagaaggttcctgaagcgcttcctgccatgtcaatcgccatgcttgtagttctctctttgggttacatgatacctcttgtgttgaactttgaggccctcttcaagaacagtaacaaacagacatttccactttcaggtggtggttggcttgaggtgaatgaagtcattgtgcgaatcattaccatggtaacctttctgatgcagttacgacttcttcaattggcatgctccgcacgttccatggatgtaagcaaagatcaatcatgggctgctgagaagaaagtgctttggatatgcttgccactgtacattataggtgcagtcgcagcttgggttgttcacatgcaatttaacaacaaccgaaggatgcttagaaaggttgctcgcttacctcgggttaatagacatgcattctgggaggaccttgtgtcatatgggggattaatactcgacgggttcttgctccctcaggttatcttaaacgcatgcttaggttccaaagtgaaggcactttccccgggattttacattggaagcaccatgattcgtgcgctacctcatgtgtatgatgtgttcagggctaagcattttgtgcccagcttgagaccattttacaggtatgcaaaccctcgcgatgatctcttcagcctcgcatgggacattgccataccatgtggagcaatactgctgtcggttcttctgttccttcagcagcggtttggaggcgctttcttcatttgttcgaagaacaggaaggcaagtgaatatgaaatggtttccacagttagctcttaa
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| Protein seq | MAPPRRDPNPNHLLLVAVLLLLVPATVAAAATYSDHCHGLPSAPDLAGGGGEGGADPTSLRLSLQLNTGYFSGGGARLFGPDLSIPPRSFSFLPSSVVRTTDASLLHVSATLTVSGGRRRRPPNDGRHLLVEYDGQAHRFRPRLPRFAGRRGSVTFGLEGYYSSASGELCMVGTGSGRAADGTAVNLLSAVLRVRYPGRANLTRPFVTGSLESTDSPSFFEPVSLVTYAEEGYAYAESASCPPPPTGRLDALQVFEGSKFSCAHLSSLFKATFRLDYTNGSSESTASSLGLHQRFMFINRMRCADDGAVRAYVVFANQTDVSAYYFMLGEKAMVVEGFWDEKRSRLCLKGCHIVNSGPSRADLAVGECGIGMSFWFPAVWSLQERNFAAGLVWNTSLKSGEGIAASSNTIAPYFRGSLSGLKYNYTKVDEAKKYYEKYGLNKKRKGKFPDSNSYRDLTFRFFLQKGGGSGYASPVTIGSMLYDGNSLVDSDHSYHIMKETNHRLLNVSYDIHYVGNWSLETFRRQHISAEGVYDAKTGSLCMIACRVVNISLDCEILVTAQFSPLDTKVAQHVKGTIRSLRKKTDPLFFEPLDIASYGLYIDKVDESIWRMDLESTMALISMTLSCLFIAVQLFHVKKVPEALPAMSIAMLVVLSLGYMIPLVLNFEALFKNSNKQTFPLSGGGWLEVNEVIVRIITMVTFLMQLRLLQLACSARSMDVSKDQSWAAEKKVLWICLPLYIIGAVAAWVVHMQFNNNRRMLRKVARLPRVNRHAFWEDLVSYGGLILDGFLLPQVILNACLGSKVKALSPGFYIGSTMIRALPHVYDVFRAKHFVPSLRPFYRYANPRDDLFSLAWDIAIPCGAILLSVLLFLQQRFGGAFFICSKNRKASEYEMVSTVSS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0026290 | OsCMeo_05g0026290.01 | Chr05 | 28147173 | 28149875 | - | NAM | ||
| CDS seq | atggcgccgccgcgccgcgatccaaaccctaaccacctcctcctcgtcgccgtactcctcctgctggtccctgccacggtggcggcggcggcaacctactcggatcactgccacggcctcccctccgcgcccgacctcgcgggcggcggcggcgagggaggcgctgatccgacctcgctgcgcctctccctccagctcaacaccggctacttctccggcggcggggcgcggctgttcggccccgacctctccatcccgccccgctccttctccttcctcccctcctccgtggtgcgcaccaccgacgcctccctcctccacgtctccgccacgctcaccgtgtcgggcggccggaggaggaggccgccgaacgatgggcggcacctcctcgtcgagtacgacggccaggcgcaccgcttccgcccccgcctcccccgcttcgccggccgccgcggctccgtcacgttcggcctcgaggggtactactcgtcggcctccggcgagctctgcatggtcggcaccggctccggccgcgccgccgacggcacggcggtgaacctcctctccgccgtgctccgcgtccgctaccccggccgcgccaacctgacgcgccccttcgtcaccggcagcctcgagagcaccgactcccccagcttcttcgagcccgtctctctcgtcacctacgccgaggagggatatgcgtacgcagagagcgcctcgtgcccgccgccgcccaccggtaggctcgacgcgctccaggtgttcgaaggtagtaaattctcatgcgcacacctcagttcgctgttcaaggcgacgttcaggctcgactacaccaacggcagcagcgagtcgaccgcctcatcgctggggcttcaccagaggttcatgttcatcaaccggatgcgatgtgccgacgatggcgcagtgcgagcttatgtggtgttcgcgaatcagacagatgtatcggcgtactactttatgcttggtgagaaggccatggtagtggagggtttctgggacgagaagaggagcaggctgtgtctcaaagggtgtcacattgtgaattcgggaccatcccgtgcggatttggcggtgggtgagtgtgggattgggatgagcttctggttccccgctgtgtggtcactacaggaacggaactttgctgcaggtttggtctggaacacgagcctgaagagcggtgagggcatagctgcaagctccaacacaatagctccatactttaggggaagtctttcgggtctgaagtataactacaccaaggttgatgaggcaaagaagtattatgagaagtatggcttgaacaagaagagaaagggaaagttccctgatagcaattcatatcgggacttaacattccggttcttcttgcagaaaggagggggctctggatatgcatcaccagtcacaattgggtcaatgctatatgatgggaactctttggttgattcagatcattcctatcatataatgaaagagacgaatcataggttacttaatgtcagctatgacattcactatgtcgggaattggtcgctagaaacatttcgccgtcagcatatctctgcagagggtgtttatgatgctaagacaggctccttgtgtatgattgcttgtcgggtggttaatatctcgttggactgtgaaattcttgtaactgctcagttttctcctttggatacaaaagtagcacagcatgtcaaggggacaattagaagcttgaggaagaagactgaccctcttttctttgaaccgctggacattgcttcgtatgggttgtacatagacaaagtggatgagtcgatctggagaatggacttggaaagcaccatggccctgatctcgatgacactatcctgtttgttcattgctgtgcaactgttccatgtcaagaaggttcctgaagcgcttcctgccatgtcaatcgccatgcttgtagttctctctttgggttacatgatacctcttgtgttgaactttgaggccctcttcaagaacagtaacaaacagacatttccactttcaggtggtggttggcttgaggtgaatgaagtcattgtgcgaatcattaccatggtaacctttctgatgcagttacgacttcttcaattggcatgctccgcacgttccatggatgtaagcaaagatcaatcatgggctgctgagaagaaagtgctttggatatgcttgccactgtacattataggtgcagtcgcagcttgggttgttcacatgcaatttaacaacaaccgaaggatgcttagaaaggttgctcgcttacctcgggttaatagacatgcattctgggaggaccttgtgtcatatgggggattaatactcgacgggttcttgctccctcaggttatcttaaacgcatgcttaggttccaaagtgaaggcactttccccgggattttacattggaagcaccatgattcgtgcgctacctcatgtgtatgatgtgttcagggctaagcattttgtgcccagcttgagaccattttacaggtatgcaaaccctcgcgatgatctcttcagcctcgcatgggacattgccataccatgtggagcaatactgctgtcggttcttctgttccttcagcagcggtttggaggcgctttcttcatttgttcgaagaacaggaaggcaagtgaatatgaaatggtttccacagttagctcttaa
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| Protein seq | MAPPRRDPNPNHLLLVAVLLLLVPATVAAAATYSDHCHGLPSAPDLAGGGGEGGADPTSLRLSLQLNTGYFSGGGARLFGPDLSIPPRSFSFLPSSVVRTTDASLLHVSATLTVSGGRRRRPPNDGRHLLVEYDGQAHRFRPRLPRFAGRRGSVTFGLEGYYSSASGELCMVGTGSGRAADGTAVNLLSAVLRVRYPGRANLTRPFVTGSLESTDSPSFFEPVSLVTYAEEGYAYAESASCPPPPTGRLDALQVFEGSKFSCAHLSSLFKATFRLDYTNGSSESTASSLGLHQRFMFINRMRCADDGAVRAYVVFANQTDVSAYYFMLGEKAMVVEGFWDEKRSRLCLKGCHIVNSGPSRADLAVGECGIGMSFWFPAVWSLQERNFAAGLVWNTSLKSGEGIAASSNTIAPYFRGSLSGLKYNYTKVDEAKKYYEKYGLNKKRKGKFPDSNSYRDLTFRFFLQKGGGSGYASPVTIGSMLYDGNSLVDSDHSYHIMKETNHRLLNVSYDIHYVGNWSLETFRRQHISAEGVYDAKTGSLCMIACRVVNISLDCEILVTAQFSPLDTKVAQHVKGTIRSLRKKTDPLFFEPLDIASYGLYIDKVDESIWRMDLESTMALISMTLSCLFIAVQLFHVKKVPEALPAMSIAMLVVLSLGYMIPLVLNFEALFKNSNKQTFPLSGGGWLEVNEVIVRIITMVTFLMQLRLLQLACSARSMDVSKDQSWAAEKKVLWICLPLYIIGAVAAWVVHMQFNNNRRMLRKVARLPRVNRHAFWEDLVSYGGLILDGFLLPQVILNACLGSKVKALSPGFYIGSTMIRALPHVYDVFRAKHFVPSLRPFYRYANPRDDLFSLAWDIAIPCGAILLSVLLFLQQRFGGAFFICSKNRKASEYEMVSTVSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.479133 | 19.481363 | 9.017698 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0557500 | RBH | 3.020095 | 1.304310 | 8.181083 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48370 | RBH | 2.087881 | 0.922125 | 2.443221 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0557500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026500 | RBH | 0.413621 | 13.551497 | 6.622997 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026290 | RBH | 0.204983 | 2.795978 | 3.685944 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029000 | RBH | 3.418253 | 0.0 | 0.229546 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026330 | RBH | 0.130490 | 0.345000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026290 | RBH | 4.019735 | 14.517526 | 20.179472 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0431000 | RBH | 4.8111945 | 11.472556 | 5.8956785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025920 | RBH | 0.187439 | 0.765725 | 0.984999 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0442200 | RBH | 4.619743 | 8.1731155 | 8.1985425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0026120 | RBH | 0.186194 | 0.305299 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0026000 | RBH | 0.447910 | 3.345560 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0026190 | RBH | 2.956661 | 13.793640 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0026230 | RBH | 0.774145 | 1.368321 | 1.126875 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0026250 | RBH | 0.037327 | 7.960339 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025730 | RBH | 0.637393 | 4.147528 | 2.676553 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0026260 | RBH | 1.551574 | 12.901541 | 11.443310 |
