Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0025990 | OGI:05074470 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:27945298-27952779 | ||||||||
| Gene Symbol | SYP71, OsSYP71, - | ||||||||||
| DNA seq | accgtgcgctgcttcggtttgctcgggcggagaaaggaagggcagcgtcgcggttgcttgcttcctcccgaatcctcgcctcgatctcgctcgcgggcgggcggagggatcgtgatcgggatcgggatcgggggcgcgcgaagatgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctccgtcgatgccgacatcaacgaatgcgtcgaggtctggatgcgaattcccttcctcctctctgtctccgcgtccgatttggtggttggctggctcctcccctcgatctgaatctggggggcactttgtttcagaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggttactgatctatacactcccccttcttagtttgggtgaatcatgctagatctgcggatactgtggcccgaggactcggtctctccttgttttagtgtagtactcgtagtagcttccaccttaccgcggatggtggatgtctaaatttaggatgactgtaaggaggctctcgtcgttgaggaagtgatttgcatgggccatttgatgttgatggaatggaatttaggattggtggactatgtttgattttttggggggaaatttggggtttcgactgtctgggactagacttttctaaattttactatgaacgagtcaagacttttcattggattgctagaatgaacactaatcgggtgaaactggggtctagatagtctcacagaggaactcaccacatagtcgtgtggttacacattgtattctgtaattggcgtcaaatatgctgtgcacaatccatatgaggtctcttcatcgtttcagtagcctgtgtttattaaagaatagatttatttattttaattaggctattgggtaaaggtgatgcagttgatgttaagccttccaatattttctgttgacccagaacttaatgtactctacattttaacttgacatttccatagtgttaactttgtaagattgttgttcccttgctaaagatttctgtccacgccacctgcatgtttgcactaggcaatgtgatgtccttgacactctttcttcatacatgcctgtgttggttatactatatttttaaaacatgcttttacattattcaattatatgatatctataaattgtacataacagtttttcacctagaattttgaagaattggttttcaatattttgttgcgacttgcaacaggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatcaataccagatggtagttcaagtgcaaagaaaaatgggacttggggcgcctcaggatcccgtactggtggagccattaagtttgacacttctggttagtaagcatcattcaacatatcacatgtgtgttctgtatattgatatacaaaatatgcatattttttttctttaaagatgtgtccaacttctacttcccctacgcatcggttgttctagattgcagtaagctgtacattttgcatttgtcggttcattttataagtatcctgcatgtgtatgaggtcgcgtttccaatttatgaaggaatcctaatattaggttcatgcttccatatgcacatgtgcttttttacgaagtcatttttggtaccgcaccatcatcaatgtcacgtgccaacttctactttttagtacactatgttagtgtatattttgattaggtaactcttgtttctatatcagtatgacagtgttgaaatatacaaccatcagattgacagagttttgatcaaccatgcgtgccgtcatgcctaaagttgtttgagcaatggttttctgtttcttttctcatcatttcgggcatgctcctgttggatgctcttgttggtcctcttgaaggagtcatgagctgactgattaaccatgcgtgcagtcatgcctaaagttgtttgagcaatggtttttctgtttcttttctcatcatttcgggcatgatcctgttagatgcttttgttggtcctcttgaaggagccatgagctgacctactttcccgcttgccacatacagatggcaactttgatgatgagtactttaaggggacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaaaatgaaacaggtaatatattaattccccgaacacgcttttcttccttttcatttttggctactgctggaagtgggatttcttatgtaaggtgacctgtgtatggaattgaaattctgcaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatctgatatgaatgaggttggttgctgtgcttcatcttgagttatacaatactatacgatgcaatggttatatgaaacatagttaccatgctcaatttttgtgatcatcaggaactggataggcaagttcccttgatggatgaaatggacgagaaggttggttctccaatagccatgaattcctcttctgcaattgtgcaatatccagcaatgcttagtttatttatctcttatttatatggtgtactgatgaatgtaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgttcttcaggtaacacctagcactaacttcccttggcatgcttggttgattgcttgagttaaatacttattcgcttctcctcgtgaactgttatcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttggtattgcggcttatctttacaagtaagtgtttttgtttccagacaagcttcaataccgaagtaaacaatcttctcgacattctctctttacacgacataagaccattcccacattcttaattatatttcttgcatattttcttttagtcatactagtgaggtagcttgttactatagttgttagaccatttgctaatatttctccacgctttcgtgttgcagtgttctaaaaaagtgagaccggactgtgccatggatctattttccacgtcttccggtgatggatggatgagtttcgacgtgtccacgagctgttccctttatttttatctcatctgtgtaatagtagtatggtgttcttccgggacttgcgaacatccttgttgaaagttgaaacagtgagcattgtgcgtgcgaaaacctgacgtcttctgtacatctgcgagtttaattcttagcaagagcgtatcaaacattctgttatgaactatgtaaaccttctcatgtatattcattgcatcagttctttggttgtgccatcacgttttgtgttttgaagtgttactataacacacatagaaaaaacttctcttcatggaattcattcataagaggatagaaatcgaaccaaaatcaaaggcagttaattcaccaaaatttaccaaacttgttttattactcttccaaaattcatgtgaaatctctccaattctagtatgcgtttgatcctactgttacaatcgcgggagcgagggaggcgttggatttaccaaactgtttgggatggccctactgttacaatcgcgggagcgagggaggtgctgggtttaccaaaccgtttggggtagacctactgttacaatcgccggaccgagggaggtaaagggtttaccaaaccgttttttttttgggggggggggggggggggggggggggtttctagtttgatggttaccgcggtaaccacgtgattatcatgaaaaccacacggttaccagtttaccataagtgatatcataattttaaaaactgataagattatcgcatgtaataactacgagaatagtacggttttggttttgtaagccctgggaggcgtactaaaattggggaatctcgtgaagtctctcctccctctcagttttcccgttcgtctccaaacctgcgagaggcggctccctcccgccatcccgatttggcttcccgccccaattcccgccgccgcataaaccctccacacaagggctcctccgccctcccctctccctccccatctcgcctcgccgctctccaacccatcgccgcggccgcgcgcgattcctcgcctccgcggcgagcctctcctctcttcctccgcccggcggcgttggcgttggcggcggcggcggcgatgagcgcggtgaacataaccaacgtggcggtgctggacaaccccaccgccttcctcaaccccttccagttcgagatctcctacgagtgcctcatccccctcgacgacggtaaggcctgcctccccttacctcctcctcctcctcctggttccgttggcgcgtggcggcgtgctagggtttcgtgtggttgggggtgttcgttgggtgccgtctcgattcggcgatgctgggctttgggccgtgttggtttcgttgtcgttagcatgtaaagtccggaagttggggagtgatgcatgactctaccatgggttccattttttccaccacaaccagataaattttgtgatgtgggtggtaatatatcatgttgatttcattcatggtgaatgatagcgttttgtgtaattggcaggctgatagcgaatgctgcacacactctagcatgtttcttatgcattggccagcttgacaaatcagaggaatcacttgtttcttttttgttcgaaagaagaagaatgtgggataataactaggaacttagtatgaaattaagagataatcaaaatatttttgcccggcatttaatcataggcgaaactaaggaattacttgtttcttttttcttagaaagaagaagaatatgtgatactaactaggaactcagcatcaaattgagaaagaagtaaaatatttctgctgagcatttaatcatagtcttgtctcttttttcactgagagaagaattatatgggatactaactaggaacttagtatcaaattaagaaagaagtaaaatatttctgctgagcatttaatcataggcaaaatggtgagcaccgagagcagggctcgaacgcaggtcacatggatataaggcaagatctttgccattgagctatgtgccagttctcaaggaaccacttgtttcatttatcatcttttgattcatgaccaaattagtcgatgggttgatgaaagactaatatttctcgtagaaggcaccttgctagttgcttggccacagcttgcagaagtgcgccgagacagaagttgatgctctttgttttgttagcttctcctttgccttagttagggatcagttcaagttgcaaaattaattgtcacggagttctctagtattggtattatgttggatatgttctttgttcctcatggcagtatgttatgatatcgaatctagcctaccagtttatagattgatcttgttagtgtatgttgtcaggatgtttggtgctaccccttttcaatatgcggtaatagactagtagtgtagctgacacactttatgcaaatgtcacagacaaatttatgcccatcaattgaatgcgcagtaaaacaacgaaatgggaatttttttaagaagaaagacccaagtttctcagattgactccatggtttcagaaaagaggttatcctacatatgtgtaggatgaatgatcccttcagacaattggtttttgattggttacaaaccttgtaatttcagttcccatgtttgtttgtaaatatttataaatattttcctaataaagaaaaaactactgggcaaggcctggtagctgactgtgaatttatacttttcctctattgtttttgttgagggcttagtcaattgcagaaaaaaaaatgatgttttgcctgtcaactggagttttcgtcccaagatgtcagattccctctcctatcttcatcgattctggtagattgttctactgtattaactatccttctgcaagacatcatctagtgtcctggtgtgtctgagattctacaacattcgattgagatcattctgtcttgattgtgtgttattggtgttgatcattatcaagggaccttgaagtgttcagagatgtttttcttttgtgcaatgatagacaggaaatgtgctgcttttcttctctagcctctactctattggttctggtttgttgataattgcacaaagtaacatgcgtgttggacagcggcaagatatgctatatgtgcttttaatttgcctatttcatttcttgagggtatgtgatgataaaaaggtttgttgatttaccttttagatctggagtggaagcttatatatgttggatctgctgaagatgaaaattatgaccaacaattagagagtgtgcttgttggccccgtcaatgttgggacctaccgttttgtactccaggtaaatttggttttgctatactaaaatactaatattttgattccaatatctttatagtgcacaatggatccagaaaccctaccacactttcgttccttgtttattttttctgcttcaattaagccttaaactcagattacaaaactattaaattttgcatctcaaaattgatgtgccattaccattttaggctgacccaccggatccctcaaagatccgtgaagaagacataatcggcgtcactgtgctgctattgacatgttcctacatgggacaggagttcatgagagtaggttactatgtgaacaatgattatgacgatgagcaactgagggaggaacccccggcaaagcttctaatagacagggtgcagaggaacattctggctgacaagccccgagtcaccaagttcccaatcaacttccatcctgaacccagtacgagcgcagggcagcagcagcaggagccacagacagcttcgccggaaaaccacacaggcggtgaaggaagtaagcccgctgctgatcaatgatcagagtggggatgctaacattttgatgcccgtgccttttaggatatcttgtgatgctgtgagagtggtgattatgcttcttctttctcctaggtttgtcattggtgtctcgtcttttggaaggcaaattgttccctagttcctggtggttgctgaaaactgtatgttctcttgaaatctgccaatctggataagagtacttgcgcaagttctgtttcatcaaatgctggatgcttcttttgtctagactatagggtgctgcagccaagagaacccattattagtcatgggtcctgtgtttgtggtctagattactgtaactaaccggaatccatttgcgcacttctgcaagttaaatggtatgatccgtaagcgggatgcttgttcagcctc
More
|
||||||||||
| CDS seq | atgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctccgtcgatgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatcaataccagatggtagttcaagtgcaaagaaaaatgggacttggggcgcctcaggatcccgtactggtggagccattaagtttgacacttctgatgtgtccaacttctacttcccctacgcatcggttgttctagattgcaatggcaactttgatgatgagtactttaaggggacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaaaatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacgagaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgttcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttggtattgcggcttatctttacaaccctgggaggcgtactaaaattggggaatctcgtgaagtctctcctccctctcagttttcccgttcgtctccaaacctgcgagaggcggctccctcccgccatcccgatttggcttcccgccccaattcccgccgccgcataaaccctccacacaagggctcctccgccctcccctctccctccccatctcgcctcgccgctctccaacccatcgccgcggccgcgcgcgattcctcgcctccgcggcgagcctctcctctcttcctccgcccggcggcgttggcgttggcggcggcggcggcgatgagcgcggtgaacataaccaacgtggcggtgctggacaaccccaccgccttcctcaaccccttccagttcgagatctcctacgagtgcctcatccccctcgacgacgatctggagtggaagcttatatatgttggatctgctgaagatgaaaattatgaccaacaattagagagtgtgcttgttggccccgtcaatgttgggacctaccgttttgtactccaggctgacccaccggatccctcaaagatccgtgaagaagacataatcggcgtcactgtgctgctattgacatgttcctacatgggacaggagttcatgagagtaggttactatgtgaacaatgattatgacgatgagcaactgagggaggaacccccggcaaagcttctaatagacagggtgcagaggaacattctggctgacaagccccgagtcaccaagttcccaatcaacttccatcctgaacccagtacgagcgcagggcagcagcagcaggagccacagacagcttcgccggaaaaccacacaggcggtgaaggaagtaagcccgctgctgatcaatga
More
|
||||||||||
| Protein seq | MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSVDADINECVEKAEAAKQEKNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQSIPDGSSSAKKNGTWGASGSRTGGAIKFDTSDVSNFYFPYASVVLDCNGNFDDEYFKGTEESNQFRREYEMRKMKQDEGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLRSSRNFCIDIVLLCVILGIAAYLYNPGRRTKIGESREVSPPSQFSRSSPNLREAAPSRHPDLASRPNSRRRINPPHKGSSALPSPSPSRLAALQPIAAAARDSSPPRRASPLFLRPAALALAAAAAMSAVNITNVAVLDNPTAFLNPFQFEISYECLIPLDDDLEWKLIYVGSAEDENYDQQLESVLVGPVNVGTYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYMGQEFMRVGYYVNNDYDDEQLREEPPAKLLIDRVQRNILADKPRVTKFPINFHPEPSTSAGQQQQEPQTASPENHTGGEGSKPAADQ |
||||||||||
| Function | Syntaxin-71 [UniProtKB/Swiss-Prot:Q9SF29] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0025990 | OsCMeo_05g0025990.01 | Chr05 | 27945298 | 27952779 | + | NAM | ||
| CDS seq | atgagcgtgatcgacatcctcacgcgggtggactccatctgcaagaagtacgacaagtacgacgtcgagaggctcaacggcgccaacgtcgccggcgaggaccccttcgcccgcctctacggctccgtcgatgccgacatcaacgaatgcgtcgagaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagggctcacaaaagaggaactcgcgacccgtagtgatctggttgctgccttacccgatagaatacaatcaataccagatggtagttcaagtgcaaagaaaaatgggacttggggcgcctcaggatcccgtactggtggagccattaagtttgacacttctgatgtgtccaacttctacttcccctacgcatcggttgttctagattgcaatggcaactttgatgatgagtactttaaggggacagaagaatcaaatcagtttcgtcgggaatatgagatgcgcaaaatgaaacaggatgaaggtttggatattatcggtgaagggctggaaactctgaaaaacatggcatctgatatgaatgaggaactggataggcaagttcccttgatggatgaaatggacgagaaggtggatagagccaacacagatttgaagaataccaacgtcagactaaaagagaccgttcttcagctgagatctagtcgcaacttctgcattgatatcgtcctgctctgtgttattcttggtattgcggcttatctttacaaccctgggaggcgtactaaaattggggaatctcgtgaagtctctcctccctctcagttttcccgttcgtctccaaacctgcgagaggcggctccctcccgccatcccgatttggcttcccgccccaattcccgccgccgcataaaccctccacacaagggctcctccgccctcccctctccctccccatctcgcctcgccgctctccaacccatcgccgcggccgcgcgcgattcctcgcctccgcggcgagcctctcctctcttcctccgcccggcggcgttggcgttggcggcggcggcggcgatgagcgcggtgaacataaccaacgtggcggtgctggacaaccccaccgccttcctcaaccccttccagttcgagatctcctacgagtgcctcatccccctcgacgacgatctggagtggaagcttatatatgttggatctgctgaagatgaaaattatgaccaacaattagagagtgtgcttgttggccccgtcaatgttgggacctaccgttttgtactccaggctgacccaccggatccctcaaagatccgtgaagaagacataatcggcgtcactgtgctgctattgacatgttcctacatgggacaggagttcatgagagtaggttactatgtgaacaatgattatgacgatgagcaactgagggaggaacccccggcaaagcttctaatagacagggtgcagaggaacattctggctgacaagccccgagtcaccaagttcccaatcaacttccatcctgaacccagtacgagcgcagggcagcagcagcaggagccacagacagcttcgccggaaaaccacacaggcggtgaaggaagtaagcccgctgctgatcaatga
More
|
|||||||
| Protein seq | MSVIDILTRVDSICKKYDKYDVERLNGANVAGEDPFARLYGSVDADINECVEKAEAAKQEKNRATVVALNAEIRRTKAKLVEEDLPKLQRLALKKVKGLTKEELATRSDLVAALPDRIQSIPDGSSSAKKNGTWGASGSRTGGAIKFDTSDVSNFYFPYASVVLDCNGNFDDEYFKGTEESNQFRREYEMRKMKQDEGLDIIGEGLETLKNMASDMNEELDRQVPLMDEMDEKVDRANTDLKNTNVRLKETVLQLRSSRNFCIDIVLLCVILGIAAYLYNPGRRTKIGESREVSPPSQFSRSSPNLREAAPSRHPDLASRPNSRRRINPPHKGSSALPSPSPSRLAALQPIAAAARDSSPPRRASPLFLRPAALALAAAAAMSAVNITNVAVLDNPTAFLNPFQFEISYECLIPLDDDLEWKLIYVGSAEDENYDQQLESVLVGPVNVGTYRFVLQADPPDPSKIREEDIIGVTVLLLTCSYMGQEFMRVGYYVNNDYDDEQLREEPPAKLLIDRVQRNILADKPRVTKFPINFHPEPSTSAGQQQQEPQTASPENHTGGEGSKPAADQ
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0025990 | OsCMeo_05g0025990.02 | Chr05 | 27945298 | 27948776 | + | IsoSeq | ||
| CDS seq | atgcgtcgagaaagcggaggcggcgaagcaggagaagaaccgcgccacggtggtcgcgctcaacgcggagatccggcgaaccaaggccaagctcgtcgaggaggacctgcccaagctgcagcgcctcgcgctgaagaaggtcaaagggctcacaaaagaggaactcgcgac |
|||||||
| Protein seq | MRRESGGGEAGEEPRHGGRAQRGDPANQGQARRGGPAQAAAPRAEEGQRAHKRGTRD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 27946863 | 27947556 | + | OsCMeo_05g0025990.01 | OsCMeo_05g0025990.01,OsCMeo_05g0025990.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.109371 | 117.092598 | 41.001099 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553800 | RBH | 1.381321 | 0.150286 | 8.329610 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48030 | RBH | 0.395266 | 0.000000 | 1.054737 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0553800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026210 | RBH | 2.369172 | 96.519348 | 29.379513 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026020 | RBH | 1.083469 | 42.941029 | 14.295991 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029410 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026040 | RBH | 0.207599 | 1.689602 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0026000 | RBH | 17.411341 | 142.764038 | 62.784996 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0427800 | RBH | 13.35311 | 23.4295245 | 37.672966 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025620 | RBH | 0.551484 | 9.827785 | 4.560230 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0438800 | RBH | 36.658642 | 46.0284155 | 80.4574125 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025820 | RBH | 0.620893 | 2.369330 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025730 | RBH | 1.747947 | 55.237709 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025920 | RBH | 22.574236 | 121.255836 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025950 | RBH | 1.540555 | 7.331044 | 4.938718 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025970 | RBH | 0.785489 | 64.807823 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025440 | RBH | 0.122201 | 1.733100 | 0.553146 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025980 | RBH | 1.926968 | 132.934723 | 47.139503 |
