Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0025960 | OGI:05074360 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:27923844-27927414 | ||||||||
| Gene Symbol | RMtATPb, atpB, AtpB | ||||||||||
| DNA seq | aaccaaagcatggatatggaaataataaagaaagaattaccaactaaaaacaaagaactcaatgatcctatgcttcatggatctgcattataaaggacacatgctttcgaagttccgagtacttttgtgcagcacaatacaatgtcactgcggttccttattaggggtaaaaggagaaaaagaagacaaaaaaacatcgctcatcagaagatgtcacccctgcttgtaatcacgtcctggctacagaacgggcatatagaaaccagaatccaaaaatttaacttgtacagaacttaacaatgaagagatcttatgaagccgactccttggcgatcttctcagctttagcaatgacttcctcaatgcctcccaccatgtagaatgactgctcgggaaggtcatcatatttcccatccaaaacaccctgcacatcagcagaaactttagcaaagagcacacaagcaaacatgaatatacattactaataagcataatgaagttctgtaatatcgcgtgtctacaactacagatctagcaaaatgtgttactgaacaaaggattaaaaaagtgtagatggattgtactgtctggtaaaactagtgtattcttgcaggcacatactgattcatcaattataaccccaaaaattgcaaaatactgtaaccgtagtggtactgaactccaaaaactactatgcatattcaattctgacctggaaactgttgacgctctccttcagctccacgtacttcccaggagcacccgtgaaaacttcagccacatggaagggctggctcaagaaacgctggatcttccttgcgcgagcgacggtcaacttgtcatcttcactgagctcgtccatacccaaaattgcaataatatcctgaagattcttgtagttctgaagaaccttttggacaccacgagcagtgttgtagtgatcctcacccaacacatggggggagagcattctggatgtggagtccagaggatcgacagcagggtaaataccaagctcagagatctgcacagatagcaaattcaagtcataatgaggacattattaacacgatgtattaggtcagttggacaaacctgtcgtgacaacacagtagtagcatcaagatgtgcaaaagtagtagcaggagcaggatccgtcaagtcatcagcaggcacataaatagcttggacagatgtaatggaacccttctttgtagttgtaattcgctcttgaagtcctccaagatcagtagcaagagttggttgatatcccacagcagatggaatacgtccaagaagagcagacacctcagagttcgcctgacatcaagattcaagattaatcaaaaccataacaatgggacttagtagaaacacctacgctacgtatactactagtaattcttttttatgcagagtagaaataccaaaagaagagatgtcttgcataaattacctgagtgaaacggaaaatgttgtcaatgaacaaaagcacatcttgtccttcggcatcacggaaatgttccgcaacagtcaaaccggtcaacccaacacgagcacgagcacccgggggctcattcatttgcccgtagacaagagcacacttgctttcactctgcaaccaaaattgatatataagtagcatgcacatgtgtgcgtcccacagaaaataagatatcaactaaaattacctgtttgtcacctagcttgatgacaccactttcaatcatttccctgtaaagatcattaccttcacgggtacgttcaccaacaccagcaaacacagagaaaccacctggcaaacaaatcatcatcagtcaaatagaacaagtgactgaaatttgaacaatatcacacatgagactatgtatagatgcataccatgggccttagcaacattgttgatcaactccataataaggacagttttgccgactcctgcaccaccaaaaagaccgatctttccacctctttggtagggcgcaagcagatccacaacctataaaattaaaccaatgtacagcaattaggactctaaatcatggttgcaactatttaccattcaaatacttcagataaccacaggatcagagaagggtgggacaattataccttaattccagtaacaagaatttgctgttctgtggcttgctcaacaaaagcaggcgcctcacgatggatgggaaggaagtggttcgttgctacaatagaagtcagcatcaataacaaaacataaataagaactggacacacaaattcttaaataactatgaataatgaagacatggaacatatagtaacttacttatgtcacccttctcatcaattggctcaccaataacattcatgatacgtccaagcgtggccctgccaacaggaacctacaaagaagaataacttccaagtcaaaaacatagtagaacacattatatatgattagtttcaacttccaagacaatgctacagatacaaggttcagcaactctaattataatcagaatttacacgaatgcatcagcagttctctgaattcagtaatgcccattttatgctaaacaattggcaagggtattaaataaacaaaaactggaatggattcctagactatgacgacaattttcattcaagcaaacagtggaaaagttataccaaccaatgcatgttaacctcacaatacgccaatacggaaatgcaacactggtgaacataatgaattctaatagactctagatgaccaccacaaaccaaaaggcagcactttatagggaaaaaaagtcaatttcttcactagcacgaacagaccaccacaaagcagccgacagtctaccgataaaatgaacgaaatggaagggcgatcgctcgccactcagaactgtacacctagatcaaatctgacagcagtagatccacatttcgtcagatctggtcggagacaacacgaaatgaaatgtacgatcgcaaacaaggaagagaagacgggcgggggggcattacagtgattggggagccggtgttgaggacgcgctgaccgcggacaagcccctcagtcccgtccatagcgatggtgcgcaccatgttctcgccaaggtgctgcgccacctcgagcacgaggcggatgttgtggtcgagcacctcgagcgccgtgaggatgggaggcaacccctcgtcaaaccgcacgtcgacgacggcgcctatgacctggcacacctgcccgacggcgccggcgccggtgaactcgtcggtgatcttacctccacccgtggccttcccagtcgcgggcgcgggaggcgccgcctccttcgccgcggcggccgtggcgtacgcggcggcgcggttgaagaggtaccccgatggcgacggtcggtggagcggcccgcgcgggcgcggggcgggcgaggccccgcggagcctggaggcggcgcggacgagggaggagagggcccggcgagtcgccatggccgggagatcgccggagacgcggggcctggatctagggttagactttttttttttttggttgcggcggcctccgcgagaagggaggaggagaggaggggagcggagtgaggag
More
|
||||||||||
| CDS seq | atggcgactcgccgggccctctcctccctcgtccgcgccgcctccaggctccgcggggcctcgcccgccccgcgcccgcgcgggccgctccaccgaccgtcgccatcggggtacctcttcaaccgcgccgccgcgtacgccacggccgccgcggcgaaggaggcggcgcctcccgcgcccgcgactgggaaggccacgggtggaggtaagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcataggcgccgtcgtcgacgtgcggtttgacgaggggttgcctcccatcctcacggcgctcgaggtgctcgaccacaacatccgcctcgtgctcgaggtggcgcagcaccttggcgagaacatggtgcgcaccatcgctatggacgggactgaggggcttgtccgcggtcagcgcgtcctcaacaccggctccccaatcactgttcctgttggcagggccacgcttggacgtatcatgaatgttattggtgagccaattgatgagaagggtgacataacaacgaaccacttccttcccatccatcgtgaggcgcctgcttttgttgagcaagccacagaacagcaaattcttgttactggaattaaggttgtggatctgcttgcgccctaccaaagaggtggaaagatcggtctttttggtggtgcaggagtcggcaaaactgtccttattatggagttgatcaacaatgttgctaaggcccatggtggtttctctgtgtttgctggtgttggtgaacgtacccgtgaaggtaatgatctttacagggaaatgattgaaagtggtgtcatcaagctaggtgacaaacagagtgaaagcaagtgtgctcttgtctacgggcaaatgaatgagcccccgggtgctcgtgctcgtgttgggttgaccggtttgactgttgcggaacatttccgtgatgccgaaggacaagatgtgcttttgttcattgacaacattttccgtttcactcaggcgaactctgaggtgtctgctcttcttggacgtattccatctgctgtgggatatcaaccaactcttgctactgatcttggaggacttcaagagcgaattacaactacaaagaagggttccattacatctgtccaagctatttatgtgcctgctgatgacttgacggatcctgctcctgctactacttttgcacatcttgatgctactactgtgttgtcacgacagatctctgagcttggtatttaccctgctgtcgatcctctggactccacatccagaatgctctccccccatgtgttgggtgaggatcactacaacactgctcgtggtgtccaaaaggttcttcagaactacaagaatcttcaggatattattgcaattttgggtatggacgagctcagtgaagatgacaagttgaccgtcgctcgcgcaaggaagatccagcgtttcttgagccagcccttccatgtggctgaagttttcacgggtgctcctgggaagtacgtggagctgaaggagagcgtcaacagtttccagggtgttttggatgggaaatatgatgaccttcccgagcagtcattctacatggtgggaggcattgaggaagtcattgctaaagctgagaagatcgccaaggagtcggcttcataa
More
|
||||||||||
| Protein seq | MATRRALSSLVRAASRLRGASPAPRPRGPLHRPSPSGYLFNRAAAYATAAAAKEAAPPAPATGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVNSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAS |
||||||||||
| Function | ATP synthase subunit beta, mitochondrial [UniProtKB/Swiss-Prot:Q01859] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0025960 | OsCMeo_05g0025960.01 | Chr05 | 27923844 | 27927414 | - | NAM | ||
| CDS seq | atggcgactcgccgggccctctcctccctcgtccgcgccgcctccaggctccgcggggcctcgcccgccccgcgcccgcgcgggccgctccaccgaccgtcgccatcggggtacctcttcaaccgcgccgccgcgtacgccacggccgccgcggcgaaggaggcggcgcctcccgcgcccgcgactgggaaggccacgggtggaggtaagatcaccgacgagttcaccggcgccggcgccgtcgggcaggtgtgccaggtcataggcgccgtcgtcgacgtgcggtttgacgaggggttgcctcccatcctcacggcgctcgaggtgctcgaccacaacatccgcctcgtgctcgaggtggcgcagcaccttggcgagaacatggtgcgcaccatcgctatggacgggactgaggggcttgtccgcggtcagcgcgtcctcaacaccggctccccaatcactgttcctgttggcagggccacgcttggacgtatcatgaatgttattggtgagccaattgatgagaagggtgacataacaacgaaccacttccttcccatccatcgtgaggcgcctgcttttgttgagcaagccacagaacagcaaattcttgttactggaattaaggttgtggatctgcttgcgccctaccaaagaggtggaaagatcggtctttttggtggtgcaggagtcggcaaaactgtccttattatggagttgatcaacaatgttgctaaggcccatggtggtttctctgtgtttgctggtgttggtgaacgtacccgtgaaggtaatgatctttacagggaaatgattgaaagtggtgtcatcaagctaggtgacaaacagagtgaaagcaagtgtgctcttgtctacgggcaaatgaatgagcccccgggtgctcgtgctcgtgttgggttgaccggtttgactgttgcggaacatttccgtgatgccgaaggacaagatgtgcttttgttcattgacaacattttccgtttcactcaggcgaactctgaggtgtctgctcttcttggacgtattccatctgctgtgggatatcaaccaactcttgctactgatcttggaggacttcaagagcgaattacaactacaaagaagggttccattacatctgtccaagctatttatgtgcctgctgatgacttgacggatcctgctcctgctactacttttgcacatcttgatgctactactgtgttgtcacgacagatctctgagcttggtatttaccctgctgtcgatcctctggactccacatccagaatgctctccccccatgtgttgggtgaggatcactacaacactgctcgtggtgtccaaaaggttcttcagaactacaagaatcttcaggatattattgcaattttgggtatggacgagctcagtgaagatgacaagttgaccgtcgctcgcgcaaggaagatccagcgtttcttgagccagcccttccatgtggctgaagttttcacgggtgctcctgggaagtacgtggagctgaaggagagcgtcaacagtttccagggtgttttggatgggaaatatgatgaccttcccgagcagtcattctacatggtgggaggcattgaggaagtcattgctaaagctgagaagatcgccaaggagtcggcttcataa
More
|
|||||||
| Protein seq | MATRRALSSLVRAASRLRGASPAPRPRGPLHRPSPSGYLFNRAAAYATAAAAKEAAPPAPATGKATGGGKITDEFTGAGAVGQVCQVIGAVVDVRFDEGLPPILTALEVLDHNIRLVLEVAQHLGENMVRTIAMDGTEGLVRGQRVLNTGSPITVPVGRATLGRIMNVIGEPIDEKGDITTNHFLPIHREAPAFVEQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQSESKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHVLGEDHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESVNSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKIAKESAS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.849772 | 194.544037 | 82.159943 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0553000 | RBH | 8.112918 | 9.651805 | 53.495941 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g47980 | RBH | 4.901119 | 5.995617 | 12.288666 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0553000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0026190 | RBH | 2.850381 | 169.409912 | 64.377388 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0026000 | RBH | 1.945621 | 52.567280 | 31.379612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029450 | RBH | 4.820353 | 258.773254 | 100.463524 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0026010 | RBH | 0.867673 | 7.251288 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025980 | RBH | 32.709549 | 271.337891 | 156.642700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0427300 | RBH | 26.9470185 | 43.25416 | 44.836676 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025600 | RBH | 1.644172 | 17.840572 | 19.824646 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0438300 | RBH | 25.196882 | 23.600981 | 44.732086 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025800 | RBH | 4.148189 | 2.434789 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025710 | RBH | 2.683851 | 201.987656 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025900 | RBH | 5.895006 | 72.731033 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025930 | RBH | 3.120546 | 17.920586 | 16.544899 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025950 | RBH | 1.276208 | 102.831047 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025400 | RBH | 1.624434 | 96.296402 | 30.773407 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025950 | RBH | 9.423132 | 186.732010 | 104.628494 |
