Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0024630 | OGI:05071660 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:26986203-26988411 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaaaggaaagttggcaaaatatttcacactgcacaaatagaaaagggcctttaaaccgtaatgcatcaaaattttgtggccgtcattttattcgtatgcaataattgcagttacaaaagactcaaccagagttactgccgtttactcatttgacaccaaatgttgaaatcttcaggcttctgagaatttcaatttactgatcgatgctcttagaatcgatataaaatgacggggttatcagatccacaggcagactaagacatgatttcctgtggtcatcaaatgttagtgtccatctccttgtttagtttcacctcctgaagaagtgccttgaagcgcaccatctccagctgatgtgattccaaacctactctgaaacacaccatccagtgagtttgcatcaggtgcaggttctcctgttacattttcagtcttccttttatggccaaggatggcttcaatggcagcggcactagctctagctgcagcctcgtcctttgcagcagcctctgccctcctcttctccctttcttcccttgcaagagcttctgcccttgccttctcttcttctgcccgagccgctgcctcagcttttttctcctccacatcctcgtatagtttggttatgtcaccttccctccctgcttcacggagtgcgccttccaataggtccctcatttcatcgctgaacaccaccttctcatccaaaagaatatcctttgcgatgtcgattgatttatccaaactagcttcaccaatgtacgcctttagcagtgcctcatagcttgcaatgcttgggctaatttctttccccctcatcttatcgagatacccatgggcattgtccagcataccaaaaccaattaggccatcaacaatcttatgataggcagttgcgtcgggcttcaaccccaactcagccattccgtcaaagtaattaatgccttcatcgatgcgatcaaccctaaagcacccttgcatcagtagcacatatgtttcctcgtctgccttaagaccactttctcccatctccttgtatagcaactcggcctcacttaccaacccttgaagactgagatgccggatcaaattattatatgctgcaacatcagcaacaacttcccactcccccatcctcctgaaccaagaaattgcatcaccgaacctaccagcagcgcagtaagcatccacaatcacactgaagcttctcacatcaacagcaatctttagtggaggatcatgctcccgaagcattctttcaaacagctcgatcgcatcatccaaccttctgttccgcccaaacgcatcaaccacaccattataactctcagctccaaacctcacctccgactctgcaccgagaacctctttgtaacactccattgccttctcctccattcccataaggaagtaagccttcatgaggctcccatacacaatgccatcaagaatcggctcgcggccaatcttttccttcaattcttcgtacaattccacggctttggcgccatcaccggcttccacgaacccagccatgagaaggttgtagacctgtggatcgggcccgacgaacccggaggccagcatctcatccttgagctcgagggcatcagtgaggcggccatggtcgacgacgagggacttgacgacaacgcgatacgcggtcggggacgggggcacgggggatccagggcgcgagatgaggcggaggtggtggagcgcggcgtcggggaggcggcgcgcggcgagggccgagaggtagagcgcgtaggtggcggcggtgggcgggacggcggcctggagggcgaaccggtggagcgcgaagaagtcgtcgaggcggcgcgcgcggaggagcgcggcgaggacggcggcgcaggtgaaggaggaagggcggcagttggagtggagcgcgtggcgggtgaggagcgcggcctcggcgaggtcggcccccttctccccgtccttggaggagggggacaggagcgcgaggatgcggttgtggagcgcgaggcgcgacggcgcgagcgacgggaggggctccgcgaggcgcacggcgctcggggacggcggcggcgtggggggcgtcgcgacgaacgcgtcgcggcgccgcgcccggcgggacgccgcggccgaggcggcgtcggcgtgcgcgagcgggaagagcgccgggacgaggcggcgcgccgagaacggcttcgacagcgacat
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| CDS seq | atgtcgctgtcgaagccgttctcggcgcgccgcctcgtcccggcgctcttcccgctcgcgcacgccgacgccgcctcggccgcggcgtcccgccgggcgcggcgccgcgacgcgttcgtcgcgacgccccccacgccgccgccgtccccgagcgccgtgcgcctcgcggagcccctcccgtcgctcgcgccgtcgcgcctcgcgctccacaaccgcatcctcgcgctcctgtccccctcctccaaggacggggagaagggggccgacctcgccgaggccgcgctcctcacccgccacgcgctccactccaactgccgcccttcctccttcacctgcgccgccgtcctcgccgcgctcctccgcgcgcgccgcctcgacgacttcttcgcgctccaccggttcgccctccaggccgccgtcccgcccaccgccgccacctacgcgctctacctctcggccctcgccgcgcgccgcctccccgacgccgcgctccaccacctccgcctcatctcgcgccctggatcccccgtgcccccgtccccgaccgcgtatcgcgttgtcgtcaagtccctcgtcgtcgaccatggccgcctcactgatgccctcgagctcaaggatgagatgctggcctccgggttcgtcgggcccgatccacaggtctacaaccttctcatggctgggttcgtggaagccggtgatggcgccaaagccgtggaattgtacgaagaattgaaggaaaagattggccgcgagccgattcttgatggcattgtgtatgggagcctcatgaaggcttacttccttatgggaatggaggagaaggcaatggagtgttacaaagaggttctcggtgcagagtcggaggtgaggtttggagctgagagttataatggtgtggttgatgcgtttgggcggaacagaaggttggatgatgcgatcgagctgtttgaaagaatgcttcgggagcatgatcctccactaaagattgctgttgatgtgagaagcttcagtgtgattgtggatgcttactgcgctgctggtaggttcggtgatgcaatttcttggttcaggaggatgggggagtgggaagttgttgctgatgttgcagcatataataatttgatccggcatctcagtcttcaagggttggtaagtgaggccgagttgctatacaaggagatgggagaaagtggtcttaaggcagacgaggaaacatatgtgctactgatgcaagggtgctttagggttgatcgcatcgatgaaggcattaattactttgacggaatggctgagttggggttgaagcccgacgcaactgcctatcataagattgttgatggcctaattggttttggtatgctggacaatgcccatgggtatctcgataagatgagggggaaagaaattagcccaagcattgcaagctatgaggcactgctaaaggcgtacattggtgaagctagtttggataaatcaatcgacatcgcaaaggatattcttttggatgagaaggtggtgttcagcgatgaaatgagggacctattggaaggcgcactccgtgaagcagggagggaaggtgacataaccaaactatacgaggatgtggaggagaaaaaagctgaggcagcggctcgggcagaagaagagaaggcaagggcagaagctcttgcaagggaagaaagggagaagaggagggcagaggctgctgcaaaggacgaggctgcagctagagctagtgccgctgccattgaagccatccttggccataaaaggaagactgaaaatgtaacaggagaacctgcacctgatgcaaactcactggatggtgtgtttcagagtaggtttggaatcacatcagctggagatggtgcgcttcaaggcacttcttcaggaggtgaaactaaacaaggagatggacactaa
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| Protein seq | MSLSKPFSARRLVPALFPLAHADAASAAASRRARRRDAFVATPPTPPPSPSAVRLAEPLPSLAPSRLALHNRILALLSPSSKDGEKGADLAEAALLTRHALHSNCRPSSFTCAAVLAALLRARRLDDFFALHRFALQAAVPPTAATYALYLSALAARRLPDAALHHLRLISRPGSPVPPSPTAYRVVVKSLVVDHGRLTDALELKDEMLASGFVGPDPQVYNLLMAGFVEAGDGAKAVELYEELKEKIGREPILDGIVYGSLMKAYFLMGMEEKAMECYKEVLGAESEVRFGAESYNGVVDAFGRNRRLDDAIELFERMLREHDPPLKIAVDVRSFSVIVDAYCAAGRFGDAISWFRRMGEWEVVADVAAYNNLIRHLSLQGLVSEAELLYKEMGESGLKADEETYVLLMQGCFRVDRIDEGINYFDGMAELGLKPDATAYHKIVDGLIGFGMLDNAHGYLDKMRGKEISPSIASYEALLKAYIGEASLDKSIDIAKDILLDEKVVFSDEMRDLLEGALREAGREGDITKLYEDVEEKKAEAAARAEEEKARAEALAREEREKRRAEAAAKDEAAARASAAAIEAILGHKRKTENVTGEPAPDANSLDGVFQSRFGITSAGDGALQGTSSGGETKQGDGH |
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| Function | Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [UniProtKB/Swiss-Prot:Q9M3A8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0024630 | OsCMeo_05g0024630.01 | Chr05 | 26986203 | 26988411 | - | NAM | ||
| CDS seq | atgtcgctgtcgaagccgttctcggcgcgccgcctcgtcccggcgctcttcccgctcgcgcacgccgacgccgcctcggccgcggcgtcccgccgggcgcggcgccgcgacgcgttcgtcgcgacgccccccacgccgccgccgtccccgagcgccgtgcgcctcgcggagcccctcccgtcgctcgcgccgtcgcgcctcgcgctccacaaccgcatcctcgcgctcctgtccccctcctccaaggacggggagaagggggccgacctcgccgaggccgcgctcctcacccgccacgcgctccactccaactgccgcccttcctccttcacctgcgccgccgtcctcgccgcgctcctccgcgcgcgccgcctcgacgacttcttcgcgctccaccggttcgccctccaggccgccgtcccgcccaccgccgccacctacgcgctctacctctcggccctcgccgcgcgccgcctccccgacgccgcgctccaccacctccgcctcatctcgcgccctggatcccccgtgcccccgtccccgaccgcgtatcgcgttgtcgtcaagtccctcgtcgtcgaccatggccgcctcactgatgccctcgagctcaaggatgagatgctggcctccgggttcgtcgggcccgatccacaggtctacaaccttctcatggctgggttcgtggaagccggtgatggcgccaaagccgtggaattgtacgaagaattgaaggaaaagattggccgcgagccgattcttgatggcattgtgtatgggagcctcatgaaggcttacttccttatgggaatggaggagaaggcaatggagtgttacaaagaggttctcggtgcagagtcggaggtgaggtttggagctgagagttataatggtgtggttgatgcgtttgggcggaacagaaggttggatgatgcgatcgagctgtttgaaagaatgcttcgggagcatgatcctccactaaagattgctgttgatgtgagaagcttcagtgtgattgtggatgcttactgcgctgctggtaggttcggtgatgcaatttcttggttcaggaggatgggggagtgggaagttgttgctgatgttgcagcatataataatttgatccggcatctcagtcttcaagggttggtaagtgaggccgagttgctatacaaggagatgggagaaagtggtcttaaggcagacgaggaaacatatgtgctactgatgcaagggtgctttagggttgatcgcatcgatgaaggcattaattactttgacggaatggctgagttggggttgaagcccgacgcaactgcctatcataagattgttgatggcctaattggttttggtatgctggacaatgcccatgggtatctcgataagatgagggggaaagaaattagcccaagcattgcaagctatgaggcactgctaaaggcgtacattggtgaagctagtttggataaatcaatcgacatcgcaaaggatattcttttggatgagaaggtggtgttcagcgatgaaatgagggacctattggaaggcgcactccgtgaagcagggagggaaggtgacataaccaaactatacgaggatgtggaggagaaaaaagctgaggcagcggctcgggcagaagaagagaaggcaagggcagaagctcttgcaagggaagaaagggagaagaggagggcagaggctgctgcaaaggacgaggctgcagctagagctagtgccgctgccattgaagccatccttggccataaaaggaagactgaaaatgtaacaggagaacctgcacctgatgcaaactcactggatggtgtgtttcagagtaggtttggaatcacatcagctggagatggtgcgcttcaaggcacttcttcaggaggtgaaactaaacaaggagatggacactaa
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| Protein seq | MSLSKPFSARRLVPALFPLAHADAASAAASRRARRRDAFVATPPTPPPSPSAVRLAEPLPSLAPSRLALHNRILALLSPSSKDGEKGADLAEAALLTRHALHSNCRPSSFTCAAVLAALLRARRLDDFFALHRFALQAAVPPTAATYALYLSALAARRLPDAALHHLRLISRPGSPVPPSPTAYRVVVKSLVVDHGRLTDALELKDEMLASGFVGPDPQVYNLLMAGFVEAGDGAKAVELYEELKEKIGREPILDGIVYGSLMKAYFLMGMEEKAMECYKEVLGAESEVRFGAESYNGVVDAFGRNRRLDDAIELFERMLREHDPPLKIAVDVRSFSVIVDAYCAAGRFGDAISWFRRMGEWEVVADVAAYNNLIRHLSLQGLVSEAELLYKEMGESGLKADEETYVLLMQGCFRVDRIDEGINYFDGMAELGLKPDATAYHKIVDGLIGFGMLDNAHGYLDKMRGKEISPSIASYEALLKAYIGEASLDKSIDIAKDILLDEKVVFSDEMRDLLEGALREAGREGDITKLYEDVEEKKAEAAARAEEEKARAEALAREEREKRRAEAAAKDEAAARASAAAIEAILGHKRKTENVTGEPAPDANSLDGVFQSRFGITSAGDGALQGTSSGGETKQGDGH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.762601 | 2.018527 | 4.191221 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0534000 | RBH | 2.139201 | 3.746220 | 3.506207 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45760 | RBH | 1.451261 | 1.904307 | 0.556294 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0534000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0024840 | RBH | 0.584634 | 1.187925 | 1.576207 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0024650 | RBH | 0.111758 | 2.337306 | 1.359708 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0031500 | SBH | 0.000000 | 2.567026 | 1.143520 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0024650 | RBH | 0.128919 | 0.119102 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0024680 | RBH | 4.230540 | 5.222728 | 6.873177 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0411600 | RBH | 2.819247 | 2.765237 | 3.5546585 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0024260 | RBH | 0.262804 | 0.290444 | 0.579352 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0422700 | RBH | 2.4261805 | 1.822194 | 8.0526605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0024470 | RBH | 0.180189 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0024340 | RBH | 0.574447 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0024530 | RBH | 3.195744 | 5.697897 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0024530 | RBH | 0.410860 | 0.323853 | 0.501747 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0024590 | RBH | 0.211580 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024020 | RBH | 0.141950 | 0.795944 | 1.764859 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0024470 | RBH | 1.065735 | 0.0 | 2.487280 |
