Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0023680 | OGI:05069630 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:26295762-26300079 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | cgaatatacaaagcggcaagtggtgtactgaccgtacaatcctactactcgtacgcctcggctgtactttgatcccaccaccaccaccaccaccactgagatgacgcgaggttcgcagttccacgcatcccaccatcaccacaccacgacgacgacgacgatgccgcagcgcgcgtgagcgatcacaaaaacgcctccgtcttccggcctttttcccgtgagtgagagagctcgcgcgcgcgcgcgtgcgttcgcctactacattctttcccctccaaccttttcgaggtagtatatttttcctcgtcctccccgtgctcttgattctctgcctcggtttggtattttggcctttttgatcgggagggcggggggccaatttgatttgccgttcatttcgatttgatttgatccgatctgatctgtagaatagacatcacatcaggggtatggaggttggcgtgagcgaagctttgaatcccgggtagccgccggagagattgcgtcctctcgccttccctccctttgattcctgctcgcccgccgctcgtctttccgctctcgccgagacacggtgttcggcggccgcgcttgtttggtcgctgcctttttatgccaaacccatccgctttgagagattggcctgtcgttttcctgttgtttggtgtaagattccgtcgctcttgaaagctcacgatgcgaaaagaggggcgaTttttttatgtttttgatttatggtattgagggttttttttttttgcttgctttgttgatggattcaggaggaggaggaggcggtggcgattgatggaatctgatcgaatgccgcttcaggctgggtcaatcgagctggctgcaacgatcggaggtttcctatcccctcgtgaaggtgtcaaatcagtatccttgtgccggatggtttggggataattttcgtagtgagttcataatagcgtctcatttgggattcctctggttgattcagttccctttgcaagtttgcgggtttgttcacggatttggttggcttgagatcgatcttcattcattgggagatggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaaggtaattacacgaattccaatttaaaattttgtctggtattctatttctttctttgaagaagcgcatgctacagggctacaacattgtgtaatctctgctgctctatctatttattcatagaactgttcataattagaatataattcatgtgatccataacatttacacttctgtacctttcttttggcaatatgacccttttaacatatacactcaatattttaccagagccaaaggacatatacgaggaatatgtctattgttatgcgattgtgattactaagtatatgagaggtatatgctatcaattttaaatcaattatctacctactgctttagctttcagctgaagcaatgttatcatatttatcaaatggctcaaatacatgacatactctggtggagacgctcaattttatatgtaaccttagaattattcagaataaaagaacccaaagcattttcattgtgttgtctagattgctcctgcagtttattaaccatgttgattctttaggtctcatgtaatatgctacaagaaagacatttttttaatccttttttttttgtttagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataaggtattttcttttctagttcctcaatcctcatgtccaggacttagcaatttgctccgttcaaacttagaagcagttctccttatgaaacaaccactttacacacagcaattcttatattgatagccatgttttggtaatgcatatttttcgttacttctcttatgctggcaaactgttttgagtttcccttttttcagacaagacatatatccccatttcagaacttaagaccagttattcctccgagctgtcttctcttatgcgcgcaaactgttttgagtttccttttttcttttcatgacaagacatatgtccccatttcagaacttaagaccagttattcctccgagctgtcttctcttatgcgcgcaaactgttttgagtttccttttttcttttcatgtcaagacatatgtccccatttcagaacttaagaccagttattcctccgagctgtcttctcttatgcgcgcaaactgtttttgagtttccttttttcttttcatgacaagacatatgtccccatttcagaacttaagaccagttgttccttcaagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctgagttttcccaagtagttcagatcctcaaaaatctcaaggaggccctggatagagatggaacgcttgacaagatcccaagcaccaactgccaggaacctcctgatcagaacaagaagagactgtccaattggatccaaagactctcgtacagtcaggccgatttctccggacctccaccgccaaagttattgtaattatatgcattcctctcttccataaatatcgtagcatctgctagatgtctctgtaaatcataaggttcttcttggtgtataaactccgcacatttttttagtggacagttcattcttgtttggcttagtaattttgcctgcaaccaaccaatggagtcttagttcccggcgggtggggatgaatcattttgtgcattgaggtagcaatcttgtagcatctggttgaaggctatttattgctcatgcttttttaggccgaggggctaatattgacgtgttattcatccaaagacttgcatacacgtgtaaatggtccaaagactaatattcatgcatttttccc
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| CDS seq | atggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataagaacttaagaccagttgttccttcaagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctgagttttcccaagtagttcagatcctcaaaaatctcaaggaggccctggatagagatggaacgcttgacaagatcccaagcaccaactgccaggaacctcctgatcagaacaagaagagactgtccaattggatccaaagactctcgtacagtcaggccgatttctccggacctccaccgccaaagttattgtaa
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| Protein seq | MDDDDYSWVRRTKFSHSIVKSNSGREQFGAFLDPFDSSTAWRQKGFSGELMIHGHNLQPRAKGAVSKSPRPSIPLAKSPVSQAERKLKAKFSDGELKQRGKISDGSLREASKEKDRKVGHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSEEQSLRLLRVCSSPAPFYSKDTTTFGDSKIHSTSVKIVGEGSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSWPRNYDNGVAKAVALDILERWTIDRSQLLIGQRFASGAYSRLFHGIYKEQPVAVKFIRQPDEEEDAELAAKLEKQFTAEVTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGSLRAFLRKLQRQKLPLEKIICIALDIAHGLEYIHSQRVIHRDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKNLRPVVPSSCPAQLRLLIEQCWSCQPEKRPEFSQVVQILKNLKEALDRDGTLDKIPSTNCQEPPDQNKKRLSNWIQRLSYSQADFSGPPPPKLL |
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| Function | Serine/threonine/tyrosine-protein kinase HT1 [UniProtKB/Swiss-Prot:Q2MHE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0023680 | OsCMeo_05g0023680.03 | Chr05 | 26295762 | 26300079 | + | NAM | ||
| CDS seq | atggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataagaacttaagaccagttgttccttcaagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctgagttttcccaagtagttcagatcctcaaaaatctcaaggaggccctggatagagatggaacgcttgacaagatcccaagcaccaactgccaggaacctcctgatcagaacaagaagagactgtccaattggatccaaagactctcgtacagtcaggccgatttctccggacctccaccgccaaagttattgtaa
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| Protein seq | MDDDDYSWVRRTKFSHSIVKSNSGREQFGAFLDPFDSSTAWRQKGFSGELMIHGHNLQPRAKGAVSKSPRPSIPLAKSPVSQAERKLKAKFSDGELKQRGKISDGSLREASKEKDRKVGHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSEEQSLRLLRVCSSPAPFYSKDTTTFGDSKIHSTSVKIVGEGSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSWPRNYDNGVAKAVALDILERWTIDRSQLLIGQRFASGAYSRLFHGIYKEQPVAVKFIRQPDEEEDAELAAKLEKQFTAEVTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGSLRAFLRKLQRQKLPLEKIICIALDIAHGLEYIHSQRVIHRDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKNLRPVVPSSCPAQLRLLIEQCWSCQPEKRPEFSQVVQILKNLKEALDRDGTLDKIPSTNCQEPPDQNKKRLSNWIQRLSYSQADFSGPPPPKLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0023680 | OsCMeo_05g0023680.01 | Chr05 | 26295762 | 26300079 | + | NAM | ||
| CDS seq | atggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataagaacttaagaccagttgttccttcaagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctgagttttcccaagtagttcagatcctcaaaaatctcaaggaggccctggatagagatggaacgcttgacaagatcccaagcaccaactgccaggaacctcctgatcagaacaagaagagactgtccaattggatccaaagactctcgtacagtcaggccgatttctccggacctccaccgccaaagttattgtaa
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| Protein seq | MDDDDYSWVRRTKFSHSIVKSNSGREQFGAFLDPFDSSTAWRQKGFSGELMIHGHNLQPRAKGAVSKSPRPSIPLAKSPVSQAERKLKAKFSDGELKQRGKISDGSLREASKEKDRKVGHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSEEQSLRLLRVCSSPAPFYSKDTTTFGDSKIHSTSVKIVGEGSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSWPRNYDNGVAKAVALDILERWTIDRSQLLIGQRFASGAYSRLFHGIYKEQPVAVKFIRQPDEEEDAELAAKLEKQFTAEVTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGSLRAFLRKLQRQKLPLEKIICIALDIAHGLEYIHSQRVIHRDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKNLRPVVPSSCPAQLRLLIEQCWSCQPEKRPEFSQVVQILKNLKEALDRDGTLDKIPSTNCQEPPDQNKKRLSNWIQRLSYSQADFSGPPPPKLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0023680 | OsCMeo_05g0023680.05 | Chr05 | 26295783 | 26300079 | + | NAM | ||
| CDS seq | atggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataagaacttaagaccagttgttccttcaagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctgagttttcccaagtagttcagatcctcaaaaatctcaaggaggccctggatagagatggaacgcttgacaagatcccaagcaccaactgccaggaacctcctgatcagaacaagaagagactgtccaattggatccaaagactctcgtacagtcaggccgatttctccggacctccaccgccaaagttattgtaa
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| Protein seq | MDDDDYSWVRRTKFSHSIVKSNSGREQFGAFLDPFDSSTAWRQKGFSGELMIHGHNLQPRAKGAVSKSPRPSIPLAKSPVSQAERKLKAKFSDGELKQRGKISDGSLREASKEKDRKVGHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSEEQSLRLLRVCSSPAPFYSKDTTTFGDSKIHSTSVKIVGEGSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSWPRNYDNGVAKAVALDILERWTIDRSQLLIGQRFASGAYSRLFHGIYKEQPVAVKFIRQPDEEEDAELAAKLEKQFTAEVTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGSLRAFLRKLQRQKLPLEKIICIALDIAHGLEYIHSQRVIHRDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKNLRPVVPSSCPAQLRLLIEQCWSCQPEKRPEFSQVVQILKNLKEALDRDGTLDKIPSTNCQEPPDQNKKRLSNWIQRLSYSQADFSGPPPPKLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0023680 | OsCMeo_05g0023680.04 | Chr05 | 26295762 | 26300079 | + | NAM | ||
| CDS seq | atggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctga
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| Protein seq | MDDDDYSWVRRTKFSHSIVKSNSGREQFGAFLDPFDSSTAWRQKGFSGELMIHGHNLQPRAKGAVSKSPRPSIPLAKSPVSQAERKLKAKFSDGELKQRGKISDGSLREASKEKDRKVGHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSEEQSLRLLRVCSSPAPFYSKDTTTFGDSKIHSTSVKIVGEGSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSWPRNYDNGVAKAVALDILERWTIDRSQLLIGQRFASGAYSRLFHGIYKEQPVAVKFIRQPDEEEDAELAAKLEKQFTAEVTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGSLRAFLRKLQRQKLPLEKIICIALDIAHGLEYIHSQRVIHRDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKLSGATSTFDRAMLVLSTREET
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0023680 | OsCMeo_05g0023680.02 | Chr05 | 26295762 | 26300079 | + | NAM | ||
| CDS seq | atggatgatgatgactactcctgggtgcggcgcaccaagttctcgcactccattgttaaatccaactctggcagggagcagtttggtgcattccttgatccgtttgacagttccactgcatggaggcagaaaggattcagtggagagctcatgattcatggacataatttacagccgagggcaaaaggagcagtctcaaagtcacctaggccttcaatcccgttggcgaaatcaccagtttcacaggcagagcggaagctgaaagctaagttttcagatggtgaattgaaacaacgggggaaaattagtgatggctcgttgcgagaagcatcgaaagagaaggatcgcaaggttgggcataaaggagaaggccttagcctggatatttcttgtccaattctggatcggacagttcaggatgacagttcagacacgcttgacttctctttccactcagaagagcaaagtttaaggttgctgagagtatgctcgagtccagctcctttctattcgaaggatacaactacgtttggtgattccaaaatacatagtacgtctgttaagattgttggagagggatcgaagccgaggaggagagcgaaatccccaatgccgacccgtgtcatctctgaagtttttaaggaggccaaagctgccactaagaggttctctagcccacagcggcaaaggaaatctagttctccacattcaccacgttcacccgatgatagtccccggtttggctttccttcaatgagaacaccgggtaacttgaaagctaggagggcctcgtcctggccaaggaactatgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctgaagtaaccattctggctcggctccatcatcgcaatgtcattaagctgattggggcatgtaatgctccaccggtcttttgtgtcatcactgagttcctgtgcggggggtctttgagagcttttttgcgcaagctccagcgccaaaagcttcctttggagaagatcatttgcattgctttggatattgcacatggtttggagtacattcactcgcaaagagtaatccatcgtgatgtgaaacctgagaacatcttgtttgatggagaatgttgtgcaaaggttgttgattttggagtggcttgtgaagaagtatactgcaactcattggaagatgacccaggtacttacagatggatggcaccagagatgtataagcgcaaaccatatggtcggaaggttgacgtctacagttttggcctcgtattgtgggaattgtttagtggctcgatcccttatgaagagatgactccattgcaggcagcttttgcagttgttaataagaacttaagaccagttgttccttcaagctgtccggcgcaacttcgacttttgatcgagcaatgttggtcttgtcaaccagagaagagacctgagttttcccaagtagttcagatcctcaaaaatctcaaggaggccctggatagagatggaacgcttgacaagatcccaagcaccaactgccaggaacctcctgatcagaacaagaagagactgtccaattggatccaaagactctcgtacagtcaggccgatttctccggacctccaccgccaaagttattgtaa
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| Protein seq | MDDDDYSWVRRTKFSHSIVKSNSGREQFGAFLDPFDSSTAWRQKGFSGELMIHGHNLQPRAKGAVSKSPRPSIPLAKSPVSQAERKLKAKFSDGELKQRGKISDGSLREASKEKDRKVGHKGEGLSLDISCPILDRTVQDDSSDTLDFSFHSEEQSLRLLRVCSSPAPFYSKDTTTFGDSKIHSTSVKIVGEGSKPRRRAKSPMPTRVISEVFKEAKAATKRFSSPQRQRKSSSPHSPRSPDDSPRFGFPSMRTPGNLKARRASSWPRNYDNGVAKAVALDILERWTIDRSQLLIGQRFASGAYSRLFHGIYKEQPVAVKFIRQPDEEEDAELAAKLEKQFTAEVTILARLHHRNVIKLIGACNAPPVFCVITEFLCGGSLRAFLRKLQRQKLPLEKIICIALDIAHGLEYIHSQRVIHRDVKPENILFDGECCAKVVDFGVACEEVYCNSLEDDPGTYRWMAPEMYKRKPYGRKVDVYSFGLVLWELFSGSIPYEEMTPLQAAFAVVNKNLRPVVPSSCPAQLRLLIEQCWSCQPEKRPEFSQVVQILKNLKEALDRDGTLDKIPSTNCQEPPDQNKKRLSNWIQRLSYSQADFSGPPPPKLL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0023680 | OsCMeo_05g0023680.06 | Chr05 | 26296487 | 26299881 | + | IsoSeq | ||
| CDS seq | atgacaatggagtggccaaggctgttgcattggatatacttgagagatggacaattgaccgctcacagttactcattggtcaaagatttgcatcaggggcatatagtcgtttgttccatggaatttacaaggagcagccagttgctgtcaaatttatcaggcagcctgatgaagaagaagatgcagaattggctgctaaacttgagaagcaattcactgctg
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| Protein seq | MTMEWPRLLHWIYLRDGQLTAHSYSLVKDLHQGHIVVCSMEFTRSSQLLSNLSGSLMKKKMQNWLLNLRSNSLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr05 | 26298920 | 26299478 | + | OsCMeo_05g0023680.01,OsCMeo_05g0023680.02,OsCMeo_05g0023680.03,OsCMeo_05g0023680.05,OsCMeo_05g0023680.06 | OsCMeo_05g0023680.02,OsCMeo_05g0023680.05,OsCMeo_05g0023680.06,OsCMeo_05g0023680.01,OsCMeo_05g0023680.04,OsCMeo_05g0023680.03 | All |
| RI | Chr05 | 26296544 | 26297890 | + | OsCMeo_05g0023680.01,OsCMeo_05g0023680.02,OsCMeo_05g0023680.04,OsCMeo_05g0023680.05 | OsCMeo_05g0023680.02,OsCMeo_05g0023680.05,OsCMeo_05g0023680.01,OsCMeo_05g0023680.04,OsCMeo_05g0023680.03 | All |
| SE | Chr05 | 26296049 | 26296544 | + | OsCMeo_05g0023680.02 | OsCMeo_05g0023680.03,OsCMeo_05g0023680.02,OsCMeo_05g0023680.04,OsCMeo_05g0023680.01 | All |
| A5 | Chr05 | 26296049 | 26296544 | + | OsCMeo_05g0023680.05 | OsCMeo_05g0023680.03,OsCMeo_05g0023680.05,OsCMeo_05g0023680.04,OsCMeo_05g0023680.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.684567 | 19.092926 | 13.010246 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0519200 | RBH | 1.029830 | 0.648050 | 5.807384 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44290 | RBH | 0.642011 | 0.411640 | 1.319824 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0519200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0023820 | RBH | 0.061351 | 29.136610 | 9.167230 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0023730 | RBH | 0.321014 | 6.800213 | 3.726217 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033400 | RBH | 1.116006 | 0.774391 | 3.147262 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0023650 | RBH | 0.057883 | 0.671971 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0023750 | RBH | 2.221060 | 14.206471 | 32.142681 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0398900 | RBH | 6.2547485 | 41.970343 | 10.1194105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0023350 | RBH | 0.163107 | 1.297183 | 1.210498 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0410000 | RBH | 9.4643995 | 34.9209345 | 9.9339295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0023510 | RBH | 0.232064 | 0.684697 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0023420 | RBH | 0.127984 | 16.503019 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0023590 | RBH | 0.597303 | 16.747097 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0023620 | RBH | 0.392803 | 1.488582 | 1.080141 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0023640 | RBH | 0.086431 | 8.620811 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G023070 | RBH | 0.197684 | 4.294493 | 2.169845 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0023450 | RBH | 0.952500 | 33.509304 | 11.251743 |
