Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0022480 | OGI:05066920 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:25187477-25190153 | ||||||||
| Gene Symbol | OsbHLH067 | ||||||||||
| DNA seq | actcctccttcttcccccccaagtccactagctctccactcatcgtcacacgttttcgtacgttacaccactgatcgatcaataatcgctcatcacccgatcgatcgatcgatatattctggcaaatctgtatatagatcgagcctcttattctgcttcttcaggtaagtcggcgtcgagctgatttgttaacgggtaggacgacgtcaagagcggtagctcgagctccgttcgcagccatggcggatgagcatgagtggtggaatagcccttgctctgcgcgcaccggcgacgacgaagccgcgtgctcgacggcggacgccgatgagtcagcggttgggagtactccgatgagcttcggccatggcggccagcctgctagtttatctgacgccgccgcctcctcgtcgtcgtcatcgttccttcttgccggacaacacatggattattggacgcaggacttcatgtgagtagatcgagctaatcaagatccagagagaattaattaatcgagctacctagctaggcataggagtatattgatttttttagtttaattaccttgcgcatggcgtggctgatggctagcaggggaggtagagcagcggcagcggccaccgcgagcttcgacacgctgctccagctccagctccaaggcggcgacgcggcgagccgccgcttgctgctcggcgaccacgccgcagcgccgccgcgtcacctcgtcgtgccaggggcgccctacggcggcggcggcggtgatgacacggcggcgccgccgcgaggcttgtcaccgacaccgtacgaggcggccgacaacctgcagcagcagcaatcgttccccggcggccaccacgtcgtcgtaggctcgtcgtcggggctcttccggccggcgacgacggcgccgccgccgcagtttctcttgcaggcgtgacaatgatcttagttattagtatctacttagctagggtttcttctaaattggtttctgatggtgcagtccaacacggatcgcctccatgatcatcatcaggacgccggctcgccgtcgccggcgacgagaagctctcctggctcgccggcggcagcgaagaaaccacggatcgaggcgccgtcgccgatgccgactttcaaggtgcgtgagctagtgaacactgaacaagaatcgatcaatcgccacattttttctttagtttttcgttgctccatcatttccagctcgatcgatcggtctcacacaaatcgatcgattgcattatgatggcttttggatttggttttgattatattctccctgcgcgcgcatgctgcaggtgaggaaagagaagctcggggacagaatcactgcgctccagcaactcgtctcgccttttggaaaggttagtacaaatatatttgccctcttttttttctgaatttcttctactttttctgcattaccagcagttttattttagctgcacaagctttaccagtagttgtttgatgatcacttcctatttcactctctagttgtttgaatatttcgtagttgatcaattattaatgtatatatccttttcaattcgatcgatcaaactgcgatttctagacggataccgcatcggttcttcacgaggccatcgaatacatcaagttccttcacgatcaagttgccgtaagtactaccctgcagagcctatatataagcaaaccctgatcaaatctctgaagaaattcttggacaattattcacagacagaactagttaattaattttgtcatgattcacatagccattaattgattggactcgattgtacctgcatgcagtctctgagctcaccgtacctgaggtgtgggcgccctgtgcagctacaacaccaacaggtatatcttgaagagtttaaccatcattgttctagttaattaaccttaagtatctactgtagtagaagtaatcttgaccgtttatttctaatccaacagaccatatcaactactcgaaatagaattatcttttctactgtaatatatattgagatcacttctagcgtgataatataggtagcagactagtaccaatagagagcaggagcaccacaaatgccatattttttaaaacctttatggtactctataccggtagtattctactatcgatattatcacaaggtgatctttgatttatgatgagttccattgctagtgtgtgtgtatatacctatcattagggagcattgtaaaacacctcaattttttcttgattttgcaccatacatcacctggatttttctcatgaacagggttcccataaggtgaatggtaactgtgaggggaagcagctggacttgcgcagccgaggcttgtgccttgttccggttgcgagcacttatactgtggccagtgagactgcgacagagttttggcaccctacctttggaggcacatttcggtagtaattaactagctagatactaactgtggccatgacagtgggagatctaggaaatttttagagcccagcttagctgatgaattaacccaactactacagtggtgcacatgcatggtgcaatgtgtcagctgctctctcttgcatgcatatggtgagctctagcagttgccacaggatcatttggtctagttgttaacagtcgcttgagatatatcaaatatttttttatgtgagagatatatc
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| CDS seq | atggcggatgagcatgagtggtggaatagcccttgctctgcgcgcaccggcgacgacgaagccgcgtgctcgacggcggacgccgatgagtcagcggttgggagtactccgatgagcttcggccatggcggccagcctgctagtttatctgacgccgccgcctcctcgtcgtcgtcatcgttccttcttgccggacaacacatggattattggacgcaggacttcatgggaggtagagcagcggcagcggccaccgcgagcttcgacacgctgctccagctccagctccaaggcggcgacgcggcgagccgccgcttgctgctcggcgaccacgccgcagcgccgccgcgtcacctcgtcgtgccaggggcgccctacggcggcggcggcggtgatgacacggcggcgccgccgcgaggcttgtcaccgacaccgtacgaggcggccgacaacctgcagcagcagcaatcgttccccggcggccaccacgtcgtctccaacacggatcgcctccatgatcatcatcaggacgccggctcgccgtcgccggcgacgagaagctctcctggctcgccggcggcagcgaagaaaccacggatcgaggcgccgtcgccgatgccgactttcaagacggataccgcatcggttcttcacgaggccatcgaatacatcaagttccttcacgatcaagttgcctctctgagctcaccgtacctgaggtgtgggcgccctgtgcagctacaacaccaacagggttcccataaggtgaatggtaactgtgaggggaagcagctggacttgcgcagccgaggcttgtgccttgttccggttgcgagcacttatactgtggccagtgagactgcgacagagttttggcaccctacctttggaggcacatttcggtag
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| Protein seq | MADEHEWWNSPCSARTGDDEAACSTADADESAVGSTPMSFGHGGQPASLSDAAASSSSSSFLLAGQHMDYWTQDFMGGRAAAAATASFDTLLQLQLQGGDAASRRLLLGDHAAAPPRHLVVPGAPYGGGGGDDTAAPPRGLSPTPYEAADNLQQQQSFPGGHHVVSNTDRLHDHHQDAGSPSPATRSSPGSPAAAKKPRIEAPSPMPTFKTDTASVLHEAIEYIKFLHDQVASLSSPYLRCGRPVQLQHQQGSHKVNGNCEGKQLDLRSRGLCLVPVASTYTVASETATEFWHPTFGGTFR |
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| Function | Transcription factor bHLH123 [UniProtKB/Swiss-Prot:Q8GXT3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0022480 | OsCMeo_05g0022480.03 | Chr05 | 25188465 | 25190137 | + | NAM | ||
| CDS seq | atggtgcagtccaacacggatcgcctccatgatcatcatcaggacgccggctcgccgtcgccggcgacgagaagctctcctggctcgccggcggcagcgaagaaaccacggatcgaggcgccgtcgccgatgccgactttcaagacggataccgcatcggttcttcacgaggccatcgaatacatcaagttccttcacgatcaagttgcctctctgagctcaccgtacctgaggtgtgggcgccctgtgcagctacaacaccaacagggttcccataaggtgaatggtaactgtgaggggaagcagctggacttgcgcagccgaggcttgtgccttgttccggttgcgagcacttatactgtggccagtgagactgcgacagagttttggcaccctacctttggaggcacatttcggtag
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| Protein seq | MVQSNTDRLHDHHQDAGSPSPATRSSPGSPAAAKKPRIEAPSPMPTFKTDTASVLHEAIEYIKFLHDQVASLSSPYLRCGRPVQLQHQQGSHKVNGNCEGKQLDLRSRGLCLVPVASTYTVASETATEFWHPTFGGTFR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0022480 | OsCMeo_05g0022480.01 | Chr05 | 25187482 | 25190137 | + | NAM | ||
| CDS seq | atggcggatgagcatgagtggtggaatagcccttgctctgcgcgcaccggcgacgacgaagccgcgtgctcgacggcggacgccgatgagtcagcggttgggagtactccgatgagcttcggccatggcggccagcctgctagtttatctgacgccgccgcctcctcgtcgtcgtcatcgttccttcttgccggacaacacatggattattggacgcaggacttcatgggaggtagagcagcggcagcggccaccgcgagcttcgacacgctgctccagctccagctccaaggcggcgacgcggcgagccgccgcttgctgctcggcgaccacgccgcagcgccgccgcgtcacctcgtcgtgccaggggcgccctacggcggcggcggcggtgatgacacggcggcgccgccgcgaggcttgtcaccgacaccgtacgaggcggccgacaacctgcagcagcagcaatcgttccccggcggccaccacgtcgtctccaacacggatcgcctccatgatcatcatcaggacgccggctcgccgtcgccggcgacgagaagctctcctggctcgccggcggcagcgaagaaaccacggatcgaggcgccgtcgccgatgccgactttcaagacggataccgcatcggttcttcacgaggccatcgaatacatcaagttccttcacgatcaagttgcctctctgagctcaccgtacctgaggtgtgggcgccctgtgcagctacaacaccaacagggttcccataaggtgaatggtaactgtgaggggaagcagctggacttgcgcagccgaggcttgtgccttgttccggttgcgagcacttatactgtggccagtgagactgcgacagagttttggcaccctacctttggaggcacatttcggtag
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| Protein seq | MADEHEWWNSPCSARTGDDEAACSTADADESAVGSTPMSFGHGGQPASLSDAAASSSSSSFLLAGQHMDYWTQDFMGGRAAAAATASFDTLLQLQLQGGDAASRRLLLGDHAAAPPRHLVVPGAPYGGGGGDDTAAPPRGLSPTPYEAADNLQQQQSFPGGHHVVSNTDRLHDHHQDAGSPSPATRSSPGSPAAAKKPRIEAPSPMPTFKTDTASVLHEAIEYIKFLHDQVASLSSPYLRCGRPVQLQHQQGSHKVNGNCEGKQLDLRSRGLCLVPVASTYTVASETATEFWHPTFGGTFR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0022480 | OsCMeo_05g0022480.02 | Chr05 | 25187482 | 25190137 | + | NAM | ||
| CDS seq | atggcggatgagcatgagtggtggaatagcccttgctctgcgcgcaccggcgacgacgaagccgcgtgctcgacggcggacgccgatgagtcagcggttgggagtactccgatgagcttcggccatggcggccagcctgctagtttatctgacgccgccgcctcctcgtcgtcgtcatcgttccttcttgccggacaacacatggattattggacgcaggacttcatgggaggtagagcagcggcagcggccaccgcgagcttcgacacgctgctccagctccagctccaaggcggcgacgcggcgagccgccgcttgctgctcggcgaccacgccgcagcgccgccgcgtcacctcgtcgtgccaggggcgccctacggcggcggcggcggtgatgacacggcggcgccgccgcgaggcttgtcaccgacaccgtacgaggcggccgacaacctgcagcagcagcaatcgttccccggcggccaccacgtcgtcgtaggctcgtcgtcggggctcttccggccggcgacgacggcgccgccgccgcagtttctcttgcaggcgtga
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| Protein seq | MADEHEWWNSPCSARTGDDEAACSTADADESAVGSTPMSFGHGGQPASLSDAAASSSSSSFLLAGQHMDYWTQDFMGGRAAAAATASFDTLLQLQLQGGDAASRRLLLGDHAAAPPRHLVVPGAPYGGGGGDDTAAPPRGLSPTPYEAADNLQQQQSFPGGHHVVVGSSSGLFRPATTAPPPQFLLQA |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0022480 | OsCMeo_05g0022480.04 | Chr05 | 25187477 | 25190153 | + | IsoSeq | ||
| CDS seq | atggcggccagcctgctagtttatctgacgccgccgcctcctcgtcgtcgtcatcgttccttcttgccggacaacacatggattattggacgcaggacttcatgggaggtagagcagcggcagcggccaccgcgagcttcgacacgctgctccagctccagctccaaggcggcgacgcggcgagccgccgcttgctgctcggcgaccacgccgcagcgccgccgcgtcacctcgtcgtgccaggggcgccctacggcggcggcggcggtgatgacacggcggcgccgccgcgaggcttgtcaccgacaccgtacgaggcggccgacaacctgcagcagcagcaatcgttccccggcggccaccacgtcg
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| Protein seq | MAASLLVYLTPPPPRRRHRSFLPDNTWIIGRRTSWEVEQRQRPPRASTRCSSSSSKAATRRAAACCSATTPQRRRVTSSCQGRPTAAAAVMTRRRRREACHRHRTRRPTTCSSSNRSPAATTS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 25188608 | 25189065 | + | OsCMeo_05g0022480.04 | OsCMeo_05g0022480.01,OsCMeo_05g0022480.04,OsCMeo_05g0022480.03 | All |
| A5 | Chr05 | 25188335 | 25188474 | + | OsCMeo_05g0022480.04 | OsCMeo_05g0022480.01,OsCMeo_05g0022480.04 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.270312 | 4.231799 | 0.235284 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0501200 | RBH | 0.739983 | 0.635024 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g42180 | RBH | 0.501702 | 0.173250 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0501200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022600 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022530 | RBH | 0.0 | 1.380497 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0035970 | RBH | 0.304077 | 0.0 | 0.463576 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022450 | RBH | 0.045543 | 0.158211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022540 | RBH | 1.918690 | 3.324543 | 0.467987 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0382500 | RBH | 2.122572 | 6.7320695 | 0.149304 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0022140 | RBH | 0.0 | 0.390183 | 0.158209 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0392600 | RBH | 2.0293995 | 9.1867085 | 0.1209085 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0022360 | RBH | 0.159725 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0022270 | RBH | 0.175836 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022400 | RBH | 0.000000 | 4.706999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022460 | RBH | 0.181003 | 0.303995 | 0.410723 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022440 | RBH | 0.185424 | 0.891173 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G021890 | RBH | 0.000000 | 0.567461 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0022300 | RBH | 0.000000 | 2.530476 | 0.0 |
