Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0020890 | OGI:05064100 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:24127709-24133295 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tttcaagccaaaggaatgtggcaaagctggaagttcattcattcaatacaacaaaccccaaagagttttacatgataggaccatgtcacccagtgatgatcagtagagctactggaaattaaacaaacacaatgactaacatcacatttctttcaagaaaaaaaagagtgagagaaggaatcacagcacagaatgaagaatgaataatgaagaagaagaatcactaaagaatgatcagaaaatcaaacagaaaaagattcactagacacattgctaccaacaaccttcaaggtagaaactattgaacctatttttgtctcagtggcatgttgttatttctgtgccatcaggtgatctggattgcttcctcctttagcttgtcctcgggggataacctcgtccccgaggaggagttcctgatctcctcaatcctccttaccacttcctccatccgaggccgctggtcgggaacaattgcaacgcatgccatggcgagctggagcatctgaaccatttcatcctcgctgttcggatgcctcaacaggtcggcatcgaaaacctcggaggtccattcttctcgaaccacggattgcacccatcttgggaggtgttcgatggaatcctcacggcctggggatctaagaggagcttttcctgttagcatctcaaggagtagcacaccgtagctgtagacatcggatttctgcgtttgccttttggtctcaaggacctccggtgcacggtatccaatgagccgtgctgggatatgagggatggccatgagctgcgcaaggccaaattcggagatacaagcactgagtccctgcgagagaagaatattacttgacttgatgtttccatggatgaactttccacccccctcagcatgaagatgagcaatcccacgtgcagcttccagagatatctttactctcgttgcccaatccaatgtagttcttccagcagttctattccctgaatatttaccataaacagtaggtcagatcatgtgcgctttcatagcaatacatgtacacataaaaggcaagttattcatgaattcatacttccagacaatacgtttgcaaatatgttgtgcagcctgtactactttcatgtatttttcttcacaggatatcaaccaaggaccaagatgcagtatacctccagaatgcatacgtcttctagtcagtttttttttagaaaataaatttcctagccatcaaatttagaaaaataattggtcggtttgcaataatagcttgttcgaaactacatgattttgtacatccataaaatctaaaagtgtatcaggtagactcactatgacatgcttgtaaagacaacataagaaaaggaaaaggttgttagacatagttcaatacaaaaaaggataaaattttggtccttgaggaggtaacaggaggtaccccattcattttctagtgtcaggaagtaaaaactttatactacaaaaatagaggactgcaaaataactcatcaaaaaagagtgagcattctatatttgcttgcacgcctatatgtagttaaaaccagctaataaattcactttgcacaaacaaaacaggttctgtcaggcaatgaaaggcttaatgatttgaagtaatagcataccatgcaaagcagcacaaaggctaccaggtgtcatatagtcatacaccaaaagcttctcgtccttggagtaatagtaagcacgcaattgaacagcattttggtgctggccaactctgccgattatctccatttgctgttcaaattccctctttcctgcgaccacttccttcagtcttttaactaccacggttgtgccatcctcaagaacagctttataggtagtcccataacttccttttccaaggacttcagctgaggccctcaatagatcctccaggtcaaaattatacgaacagccattaaagaaaatcaatttattcctctctgcttcttgaataccactactgctgtactcctgctttgatttttcagctcttccacctgcagcagcctttcctttggatgaaaatgaagctatgccaggctcgccatctttctttcttttgaagatgcatatcaagagcacaacaatcaaaatcagaagtaataaccctcctccagcagctattgcaattatgacaccaaggctaagccttttccagaagcttttcttggtatttgggggcaatggcgacatcggagaaggagaaggtgctgttcctggacatggttccagtggaagtccacagagaaaagcattcccgaagaatgaactggctgggaatttctgcagggaaggcggtatgggcccactcaggttattgttgcttaaatttaaatgtctcaaattggggaggtgaaggtcagggatgggtccagaaagagagttattctggaggagcaatgcagtaagttgagtgatattttgcactttcaatgggatttctccatcgaaagagttgtacgacaggtctaggaatgttaggttggaagatagtgaagttggtataattccggacaagttgttgtgctgaaggtaaagagaatgcagggaaggaatggatgctacatcaggggggaggctaatggtgagacgattggatctaaggctcaacacctgtagcgcgtcaagcttgccaagtgtgtctgaggggatgggaccaaagagccctactgcaggtagacgcaattcacgaacacgcctcccatctggtgtgcatgtaatcccaacccacgatgtgcagacttgagtcgtgagagtccagttgagttttcgaccatggggcactgatgcagcaaatgcaagaagggcctgcctgtctgagtttaggtcagcacatctggcacaagggatgtgcagaaacaaaaacgaagcagaaagaaaggctatgagcacaaggtgctgcattgttaggattaacttgaccaataatgaggaccagaattataatccaaaggtccacgtcagtgcttcattcctgccacattaaaaggatcatagtcaatagcaagtaagattgttcatagcatcaggagtgagaaacatagaaatacatgaagcgttaaatattaaacacatgttatttgcaaagtgggaaaactagtaaaaacataaggtattttgaatacaaaacatgaagccatgaagaatttaaactttctagtggacatgtatcttctttttaactaagaacctacctgaaaagatacatccttgcaacgatagcttttctgtttgtcattgtaacgatttgtaatggacccaaacacacatatgtacgaactaccttaaggagcagtggagtttgatgcactaaatttgcattcgtccatttacaatttaccagaagcatttcaatttttttactattcatatcaagggtggcttaagagcattgatccattgagtatcagattcctggtcctgctaaggaatacaaacaaatatgctgccagaatggcatccattgcagggccaacatgatcagagagagattgaagaatttgcatgcgagggaagactgaagagtctacataccctaagctatctctcagcataatcaggagcccacttggcaactttgaatcacaactgattgttattattgacacctaaagctggtgtaagctcataatgcacattattggaataaagcatagagtgataaattgaagagaagatgacaaagtactggtcctctcttttatatgtaaaaggggaccaccaaattctcaactgctacacagcaaacccccctcccaaatggaacaccaaaacagaataaccctccttgttttttctctagtcttgtccaaaagatccacacccaaactaatattgccggtttatctcgagcttttctgaaatggagcggttgggaccatgtgccatataaaacgaaacatgtatctctttgataaagtaccccatccacgttaaccttttcacaaaggatagctccattaattctcttaacaaaatagccgcggcacctaaacagtgcacttaatcgtaaccagaaaggacacaaggatagtgacaatgaacaagacaccgttccaatcggacatggcatagcacattatattggtgctctctcttgcaaagatgttacttgcacaaaagcaacatgcaaagcacctaacgtaggctcagtcactactactatatctcatttcagctcgttctttttttctaaaatctagaggaccaagtgctttgggtaaaggcaggagcacgaaaccaaaagtccagcacataaagcaggtggtctcaagatgcaagaaaccagaggggagtagaaaagatgagggttttggaggcaggattggggatctgctcgctgatgggggagatcatgggcagcactgcacactctggcacagtgctagggccaaagacatctcacattcacaccataggacaaatgtgcaaagcaaaagctaccactgtctcacactacgcaacagtagaagtgtaccacagtactgctcctctgcttgacatgttgtaaagatttttcatgtgcagtaaatccaacttgggaattgcactagtaaaatttttcattgtattgagttagtagtactgtttaaaatatattctacatttctaagttactacagttcagcaatggtcagtggaatgagttggtaactagatggaagccaacaataccattagttaatcatggaatcacactagaaatagagagagtgccatggtcaggtagattcaaagtgcaaagtccttaaacactaagaaaaggactacgcccatataatctccttttcctttttttttctaaaagaaaaaaagaagaagaagagagcacgcgtcaaacaaccaaccagcctatcacacgaaagagaaagcagggaacagtttgttacaacttagaacagaaatcagatgaacaatctacattatatactcaaccaaaatttcctccctaaaaagaaaaatcagttttccttttcattttttttacagtataagcaggaactgggaatcactgaattatgccatatcatacctcgcgaaattccaccggagttgcggccacagctgaattccgcagcagccatgccatgctcggtctccaaaaggctcaacaaacgcagaaaaaaaaagaaagaaaataaatccgacctttccggccacacggatcaagaaaccgcccgccgccgcgccgccgccgctcgcctctccggtgcggaaaccccttccagtcgccgccggcttaactagggcgagagccactcaacacagcgtcagaaccacccccaccaagaactgctccaagaaacaacgcccgccccgccgtggccgatccgccgcgcccggcattcccttccccggcccccgcgcgtcgaccctcccgcagcccgccggccggtcacctccctctcgctcgctgcgccgcctcctcccagtctctgtgcagcgcgtgcgcgggcgcgagtggacgaagtggcggacgtgtgcactgttcgcgcgggcggtgcgggtgcgcgaggcgagcgagcgagcgagttttcgctgcgcatttaagacaagtgaagcgtgtgt
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| CDS seq | atgcagcaccttgtgctcatagcctttctttctgcttcgtttttgtttctgcacatcccttgtgccagatgtgctgacctaaactcagacaggcaggcccttcttgcatttgctgcatcagtgccccatggtcgaaaactcaactggactctcacgactcaagtctgcacatcgtgggttgggattacatgcacaccagatgggaggcgtgttcgtgaattgcgtctacctgcagtagggctctttggtcccatcccctcagacacacttggcaagcttgacgcgctacaggtgttgagccttagatccaatcgtctcaccattagcctcccccctgatgtagcatccattccttccctgcattctctttaccttcagcacaacaacttgtccggaattataccaacttcactatcttccaacctaacattcctagacctgtcgtacaactctttcgatggagaaatcccattgaaagtgcaaaatatcactcaacttactgcattgctcctccagaataactctctttctggacccatccctgaccttcacctccccaatttgagacatttaaatttaagcaacaataacctgagtgggcccataccgccttccctgcagaaattcccagccagttcattcttcgggaatgcttttctctgtggacttccactggaaccatgtccaggaacagcaccttctccttctccgatgtcgccattgcccccaaataccaagaaaagcttctggaaaaggcttagccttggtgtcataattgcaatagctgctggaggagggttattacttctgattttgattgttgtgctcttgatatgcatcttcaaaagaaagaaagatggcgagcctggcatagcttcattttcatccaaaggaaaggctgctgcaggtggaagagctgaaaaatcaaagcaggagtacagcagtagtggtattcaagaagcagagaggaataaattgattttctttaatggctgttcgtataattttgacctggaggatctattgagggcctcagctgaagtccttggaaaaggaagttatgggactacctataaagctgttcttgaggatggcacaaccgtggtagttaaaagactgaaggaagtggtcgcaggaaagagggaatttgaacagcaaatggagataatcggcagagttggccagcaccaaaatgctgttcaattgcgtgcttactattactccaaggacgagaagcttttggtgtatgactatatgacacctggtagcctttgtgctgctttgcatgggaatagaactgctggaagaactacattggattgggcaacgagagtaaagatatctctggaagctgcacgtgggattgctcatcttcatgctgaggggggtggaaagttcatccatggaaacatcaagtcaagtaatattcttctctcgcagggactcagtgcttgtatctccgaatttggccttgcgcagctcatggccatccctcatatcccagcacggctcattggataccgtgcaccggaggtccttgagaccaaaaggcaaacgcagaaatccgatgtctacagctacggtgtgctactccttgagatgctaacaggaaaagctcctcttagatccccaggccgtgaggattccatcgaacacctcccaagatgggtgcaatccgtggttcgagaagaatggacctccgaggttttcgatgccgacctgttgaggcatccgaacagcgaggatgaaatggttcagatgctccagctcgccatggcatgcgttgcaattgttcccgaccagcggcctcggatggaggaagtggtaaggaggattgaggagatcaggaactcctcctcggggacgaggttatcccccgaggacaagctaaaggaggaagcaatccagatcacctga
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| Protein seq | MQHLVLIAFLSASFLFLHIPCARCADLNSDRQALLAFAASVPHGRKLNWTLTTQVCTSWVGITCTPDGRRVRELRLPAVGLFGPIPSDTLGKLDALQVLSLRSNRLTISLPPDVASIPSLHSLYLQHNNLSGIIPTSLSSNLTFLDLSYNSFDGEIPLKVQNITQLTALLLQNNSLSGPIPDLHLPNLRHLNLSNNNLSGPIPPSLQKFPASSFFGNAFLCGLPLEPCPGTAPSPSPMSPLPPNTKKSFWKRLSLGVIIAIAAGGGLLLLILIVVLLICIFKRKKDGEPGIASFSSKGKAAAGGRAEKSKQEYSSSGIQEAERNKLIFFNGCSYNFDLEDLLRASAEVLGKGSYGTTYKAVLEDGTTVVVKRLKEVVAGKREFEQQMEIIGRVGQHQNAVQLRAYYYSKDEKLLVYDYMTPGSLCAALHGNRTAGRTTLDWATRVKISLEAARGIAHLHAEGGGKFIHGNIKSSNILLSQGLSACISEFGLAQLMAIPHIPARLIGYRAPEVLETKRQTQKSDVYSYGVLLLEMLTGKAPLRSPGREDSIEHLPRWVQSVVREEWTSEVFDADLLRHPNSEDEMVQMLQLAMACVAIVPDQRPRMEEVVRRIEEIRNSSSGTRLSPEDKLKEEAIQIT |
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| Function | Probable inactive receptor kinase At5g58300 [UniProtKB/Swiss-Prot:Q9LVM0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0020890 | OsCMeo_05g0020890.01 | Chr05 | 24127709 | 24133295 | - | NAM | ||
| CDS seq | atgcagcaccttgtgctcatagcctttctttctgcttcgtttttgtttctgcacatcccttgtgccagatgtgctgacctaaactcagacaggcaggcccttcttgcatttgctgcatcagtgccccatggtcgaaaactcaactggactctcacgactcaagtctgcacatcgtgggttgggattacatgcacaccagatgggaggcgtgttcgtgaattgcgtctacctgcagtagggctctttggtcccatcccctcagacacacttggcaagcttgacgcgctacaggtgttgagccttagatccaatcgtctcaccattagcctcccccctgatgtagcatccattccttccctgcattctctttaccttcagcacaacaacttgtccggaattataccaacttcactatcttccaacctaacattcctagacctgtcgtacaactctttcgatggagaaatcccattgaaagtgcaaaatatcactcaacttactgcattgctcctccagaataactctctttctggacccatccctgaccttcacctccccaatttgagacatttaaatttaagcaacaataacctgagtgggcccataccgccttccctgcagaaattcccagccagttcattcttcgggaatgcttttctctgtggacttccactggaaccatgtccaggaacagcaccttctccttctccgatgtcgccattgcccccaaataccaagaaaagcttctggaaaaggcttagccttggtgtcataattgcaatagctgctggaggagggttattacttctgattttgattgttgtgctcttgatatgcatcttcaaaagaaagaaagatggcgagcctggcatagcttcattttcatccaaaggaaaggctgctgcaggtggaagagctgaaaaatcaaagcaggagtacagcagtagtggtattcaagaagcagagaggaataaattgattttctttaatggctgttcgtataattttgacctggaggatctattgagggcctcagctgaagtccttggaaaaggaagttatgggactacctataaagctgttcttgaggatggcacaaccgtggtagttaaaagactgaaggaagtggtcgcaggaaagagggaatttgaacagcaaatggagataatcggcagagttggccagcaccaaaatgctgttcaattgcgtgcttactattactccaaggacgagaagcttttggtgtatgactatatgacacctggtagcctttgtgctgctttgcatgggaatagaactgctggaagaactacattggattgggcaacgagagtaaagatatctctggaagctgcacgtgggattgctcatcttcatgctgaggggggtggaaagttcatccatggaaacatcaagtcaagtaatattcttctctcgcagggactcagtgcttgtatctccgaatttggccttgcgcagctcatggccatccctcatatcccagcacggctcattggataccgtgcaccggaggtccttgagaccaaaaggcaaacgcagaaatccgatgtctacagctacggtgtgctactccttgagatgctaacaggaaaagctcctcttagatccccaggccgtgaggattccatcgaacacctcccaagatgggtgcaatccgtggttcgagaagaatggacctccgaggttttcgatgccgacctgttgaggcatccgaacagcgaggatgaaatggttcagatgctccagctcgccatggcatgcgttgcaattgttcccgaccagcggcctcggatggaggaagtggtaaggaggattgaggagatcaggaactcctcctcggggacgaggttatcccccgaggacaagctaaaggaggaagcaatccagatcacctga
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| Protein seq | MQHLVLIAFLSASFLFLHIPCARCADLNSDRQALLAFAASVPHGRKLNWTLTTQVCTSWVGITCTPDGRRVRELRLPAVGLFGPIPSDTLGKLDALQVLSLRSNRLTISLPPDVASIPSLHSLYLQHNNLSGIIPTSLSSNLTFLDLSYNSFDGEIPLKVQNITQLTALLLQNNSLSGPIPDLHLPNLRHLNLSNNNLSGPIPPSLQKFPASSFFGNAFLCGLPLEPCPGTAPSPSPMSPLPPNTKKSFWKRLSLGVIIAIAAGGGLLLLILIVVLLICIFKRKKDGEPGIASFSSKGKAAAGGRAEKSKQEYSSSGIQEAERNKLIFFNGCSYNFDLEDLLRASAEVLGKGSYGTTYKAVLEDGTTVVVKRLKEVVAGKREFEQQMEIIGRVGQHQNAVQLRAYYYSKDEKLLVYDYMTPGSLCAALHGNRTAGRTTLDWATRVKISLEAARGIAHLHAEGGGKFIHGNIKSSNILLSQGLSACISEFGLAQLMAIPHIPARLIGYRAPEVLETKRQTQKSDVYSYGVLLLEMLTGKAPLRSPGREDSIEHLPRWVQSVVREEWTSEVFDADLLRHPNSEDEMVQMLQLAMACVAIVPDQRPRMEEVVRRIEEIRNSSSGTRLSPEDKLKEEAIQIT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.104037 | 11.218866 | 5.646383 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0480400 | RBH | 0.086118 | 0.307061 | 3.212292 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g40200 | RBH | 0.057527 | 0.204005 | 0.816822 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0480400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0021040 | RBH | 0.0 | 0.0 | 5.423173 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0021000 | RBH | 0.044777 | 2.231806 | 0.998675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038100 | RBH | 0.159419 | 7.981783 | 7.418472 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020910 | RBH | 0.0 | 0.713570 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020980 | RBH | 0.0 | 20.360886 | 10.299562 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0365000 | RBH | 3.9236485 | 6.899885 | 3.4993485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020580 | RBH | 0.000000 | 1.978242 | 0.870027 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0375100 | RBH | 4.470227 | 2.544235 | 11.285777 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020820 | RBH | 0.028876 | 0.463913 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020800 | RBH | 0.317040 | 3.158976 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020870 | RBH | 1.610868 | 29.055637 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020930 | RBH | 0.000000 | 0.981909 | 0.875404 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020960 | RBH | 0.0 | 11.929563 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020400 | RBH | 0.000000 | 4.603404 | 2.608876 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020840 | RBH | 0.0 | 15.908583 | 5.841896 |
