Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0020430 | OGI:05063410 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:23809822-23810929 | ||||||||
| Gene Symbol | OsPRA1 | ||||||||||
| DNA seq | aaccaccgtaccgcaaccgcaaccgcgagagccgagagagaagcctttttccccgatcgattcccttctctccgctccgcatcgccatggcctcctcagcaccgacgccgccgccgctcctcccggtgaccaacccggcagccgcggggtcgtccccggccgccaccgccgtgggatctgacgcgccgatcgcaaccccggcgttccggctcttcctgagcaagctctccgactcggcgcggcgctcgctgtccgaccggcggccgtggacggagctggtcgaccgctcggcgttctcgcggccggactccctctccgacgccacctcccgcctccgccgcaacctcgcctacttccgcgtcaactacgccgccgtggtggccttcgcgctcggggcgtccctcctcgcgcaccccttctcgctcctcgtcctcctcggcctcctcgccgcctggtgcttcctctacctcttccgcggctccgaccagcccgtcgtcctcttcggtcgcaccttctccgaccgcgagacgctgctcggcctcgtcgtcgcgtcgttcgtggccttcttcttcacctccgtcgcgtcgctcatcatctccgggctgctcgtcggcggggccatcgtcgccgtccacggcgcgtgccgcatgcccgaggacctcttcctcgacgacgctgacgccgccagcggcaacagcgcggcccagggtctcctgtccttcctcggggcgcccggatctagggtttgaggcggcggcgggcgacgagatctggtaggcttctttggctcgagtgtttcgcgttactctgtaattgatctggatctgatctcgttggatctatatcacatttgttctctaattcatcattctgcaatccgtagctacagatctactacttgtttacctatattttggatcgatgtatcactttgcgaagttgtgctgaatatattgagtctcttgacgagatttagtgttaaaattactaccttatattgttttgaattaatttagcatgaatgtatgaagagtatgtcgacttatcactgtttaaatagtagagaagaatatatgatggttcagctgtgcattgtcacttttcattc
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| CDS seq | atggcctcctcagcaccgacgccgccgccgctcctcccggtgaccaacccggcagccgcggggtcgtccccggccgccaccgccgtgggatctgacgcgccgatcgcaaccccggcgttccggctcttcctgagcaagctctccgactcggcgcggcgctcgctgtccgaccggcggccgtggacggagctggtcgaccgctcggcgttctcgcggccggactccctctccgacgccacctcccgcctccgccgcaacctcgcctacttccgcgtcaactacgccgccgtggtggccttcgcgctcggggcgtccctcctcgcgcaccccttctcgctcctcgtcctcctcggcctcctcgccgcctggtgcttcctctacctcttccgcggctccgaccagcccgtcgtcctcttcggtcgcaccttctccgaccgcgagacgctgctcggcctcgtcgtcgcgtcgttcgtggccttcttcttcacctccgtcgcgtcgctcatcatctccgggctgctcgtcggcggggccatcgtcgccgtccacggcgcgtgccgcatgcccgaggacctcttcctcgacgacgctgacgccgccagcggcaacagcgcggcccagggtctcctgtccttcctcggggcgcccggatctagggtttga
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| Protein seq | MASSAPTPPPLLPVTNPAAAGSSPAATAVGSDAPIATPAFRLFLSKLSDSARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVVAFALGASLLAHPFSLLVLLGLLAAWCFLYLFRGSDQPVVLFGRTFSDRETLLGLVVASFVAFFFTSVASLIISGLLVGGAIVAVHGACRMPEDLFLDDADAASGNSAAQGLLSFLGAPGSRV |
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| Function | PRA1 family protein B4 [UniProtKB/Swiss-Prot:O80915] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0020430 | OsCMeo_05g0020430.01 | Chr05 | 23809822 | 23810929 | + | NAM | ||
| CDS seq | atggcctcctcagcaccgacgccgccgccgctcctcccggtgaccaacccggcagccgcggggtcgtccccggccgccaccgccgtgggatctgacgcgccgatcgcaaccccggcgttccggctcttcctgagcaagctctccgactcggcgcggcgctcgctgtccgaccggcggccgtggacggagctggtcgaccgctcggcgttctcgcggccggactccctctccgacgccacctcccgcctccgccgcaacctcgcctacttccgcgtcaactacgccgccgtggtggccttcgcgctcggggcgtccctcctcgcgcaccccttctcgctcctcgtcctcctcggcctcctcgccgcctggtgcttcctctacctcttccgcggctccgaccagcccgtcgtcctcttcggtcgcaccttctccgaccgcgagacgctgctcggcctcgtcgtcgcgtcgttcgtggccttcttcttcacctccgtcgcgtcgctcatcatctccgggctgctcgtcggcggggccatcgtcgccgtccacggcgcgtgccgcatgcccgaggacctcttcctcgacgacgctgacgccgccagcggcaacagcgcggcccagggtctcctgtccttcctcggggcgcccggatctagggtttga
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| Protein seq | MASSAPTPPPLLPVTNPAAAGSSPAATAVGSDAPIATPAFRLFLSKLSDSARRSLSDRRPWTELVDRSAFSRPDSLSDATSRLRRNLAYFRVNYAAVVAFALGASLLAHPFSLLVLLGLLAAWCFLYLFRGSDQPVVLFGRTFSDRETLLGLVVASFVAFFFTSVASLIISGLLVGGAIVAVHGACRMPEDLFLDDADAASGNSAAQGLLSFLGAPGSRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.724275 | 12.032922 | 5.160396 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0474400 | RBH | 0.578617 | 1.435069 | 1.414211 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39670 | RBH | 0.733790 | 1.064169 | 0.688121 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0474400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020600 | RBH | 0.342348 | 7.097213 | 4.816031 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020550 | RBH | 0.0 | 9.169119 | 1.439717 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038670 | RBH | 2.422177 | 3.332529 | 2.130111 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020430 | RBH | 0.128725 | 0.771230 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020550 | RBH | 0.933725 | 52.184788 | 7.453824 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0360600 | RBH | 6.9915945 | 17.1781055 | 5.4718565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020150 | RBH | 0.260562 | 1.447462 | 0.826083 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0370200 | RBH | 3.4080935 | 6.0671625 | 6.276104 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020390 | RBH | 0.182219 | 0.433577 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020370 | RBH | 0.327222 | 22.442572 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020450 | RBH | 7.093846 | 14.119995 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020520 | RBH | 0.498177 | 2.256094 | 1.682516 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020520 | RBH | 0.275424 | 21.779154 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019960 | RBH | 0.140739 | 9.898158 | 2.866775 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020410 | RBH | 0.853226 | 17.730848 | 3.875251 |
