Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0020280 | OGI:05062990 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:23638260-23642646 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atcaagtatcaaccatcagacttcaggtatctctgagtagactcaactgttcaaacaaatctgttcagtgcaggaattgtgtgtagaaactagtagaaaatttatactcctcgctttcgtcacaactgtttagtggacttcagagattatgtgtgtttcatgaaccaaagaatgaaagaatgggtgtgagcagtgcaggcatatctgtacaactgaattgcctgcccaaaatgggtcctaaacgactgtacaatttgctgtgatctaggcaagaatggacaccgttgccgcagcaataatattgcgcaatgaactggctttttatgatgtgatgatctcaagttcagcccaccacaacggactattttttggaatcgcctcttcttcagaaatcccagtgatctcttgcatccatgcggttacctctgccaccgttggcctctccatgggatcttcacttaagcataatttcaccagctttgtgagttctctgacttgctcctcagggactgatttgagtgtggggtcaaccatgtccatcaggggtttgtcaccaatgaggtatctatgtgcccaaagaataaggaggccataatcatcagaatatgggcgccttccagagattgtctcaagcagaagcaaagcaaacttataaactgtgatgtgctcatcagaagcctcagatttttcgtcttcttttttatcaccccaaaaactgatgtcggaaacctttgcagcattgtcttcagtcaagtatatgcaagaagtacttaggtctctcagcagtacaggagggttcagctgttgcatgtagttcagacagtacatcactcccatcgctatccgtaagcatgactgccagtctaattggtctgcttctttaactgcaacaacaatgttttaatggtgatcatgaatagctgctgatagcgtgactgatcttggtgcgaagaataacaaactaaatgtgaagttttcttaccatgcaagtgttcaaacagtgttccatttgaaacatactcaaacaccatcatccgagtgaatggttcttcatcttcacagtaacccacaaggttcattaaattcttatggctcacttttgataagacttcaacctagaacaccatagcatatccatgttagtaagtaaacatcttccctgcggaagaaataatacagaaaaaaccattatataccttatccttgaattgtgcttcagctacagttgtccacccacttgcgtaagtcaccaatgtagacacagcagctatttctgctccacacgggagagttcctttatacaatgtgaatctaggtagtgtgtcaattatgttgctgaaaccttcacaggctgtttcaagctctgagcgtttgaatttagttattcctgcaaaacaacaattggatgttgattctaaatgctgctttatgcgtccaaagaagaatgaaatataacataactcgggaacatgccaaactcgttgaaacacaactcaatatgtaaactgaataataattaaaccaagaatggtataaattcaatagcatatcaaattaacaaccaacctcccaaagtagcagtatgtaattgcccacttgctgttggagaaaaaggtaccacagtactagtcttcctgtgccggtaacaaaggatgagtgcagctgacatggccacaaccaccaagcaggccactcctccgatggatgcatatattgctgtcttgctcttgttttcttggcctgaagttccgtttgtagtggtggatacagaaggggcaggggagggcatagaaggggcaggggagggaatgggttcggaagggagtggcggctgtggagaacttgatcgaggagctacgggacgatgtggcactgttatattatcagggtgagactttggcattgtaacattttccagtggtgattcagatgttccagacaaaagcatcctgttcttttgggaacgtttttgtttgcttgctagaagttttcttcttgtggcattctcttcgttcctactagaagattaagtgactgttagagaataaaagaatcatcataaggtcatcaggatttccatcaaccaaagaaacacagttaacattattacctaagtaatggtaccccatgctatagttgatagattaaagtactgaactacagtaatgcatattaataaagctatccccttcataaaaaataaaataaaaaccagtcttcattccattcatttgccacaccaaggaaatgatataggtttaggagttaccatgtggaggatcagtttttacagcagtttagcttgctttgacacttttcagttttatataatttcactaatttcagataccctagaatatatgttacaattaaataaaggtctaggatagtaagaaactaagatattgttgacaccataaatacagtgacagaatcaaagagttcccaattttattttatttgctagaagaacttggactcaaaattttaaacatttgcacaaataacaagtatcattagaaacaggtacctttctgtagatatcttatttaaagaagtctggtccatcgaggcgagctcatattcaattggcaaactgccagaaagtttgttgccttcgagaaagctgaaacaaggtactaatattaagatcatgcagttggactaaattcagattaaagtgccatactgaacttctcacgtacagaaatttcagggataaaatatttcttagctccgatggaaatggtccgctgaaagtattgtatcctagatccaacacctttaactcatgtaaatatttcatctctgtggggatgattccatagaaagagttattgtgtagaatgctgaaacataaattaaaaatagaacagtaagtatgtggaataccgctttgcaagcaaaatgtcaatgtgtttagaagaaagtactgaatatgcttacatggaacgcatatgggcaagtgttccaatctcctgaggtagcataccctttagaccaagatttggtaagttcctacaacaattgcacactcaaactaaggggaaacgcaagcaaagacatgatcaatagtagcatagggatatactatgaatattaagtatgacaaaagaacaaaccgctgtcttattccagattaaaaaccatagactctctgtggtgccattgcatcacacaataatagataacatagaattgcagcaggcacaatactgttaactgctactaaatgaatacccacacccacccgcacaaacttgtgtgaaaaatgtaaacaaagacagtaaagtgacgatgctctacagatgaatctagagccctcctaaacagggtgtgagaaaaaaaattgtcccatgcagatggtccctatacaccaaaaaatgtcaattatcactactactgcaatgctactaatgacgttatgcaacaaaaatggaatggcaagatctaattcaatctaaacgagtaaatttaagattatagtttttttttcccagatcgcagcttagttaaggcagttcatttcttccaaatgaatagaaaggttattttctgggtctcctatctcttttactgcacataagtgaaaaacttacagggccacaactcgaccatcatccgagcactccacaccgaaccaagaacaggggctggcgttcccttcatcccaatccaacagagcatcaaatgggtcagcatcaatcatctctttaaacctcataagagcgacacctgcaattcagcaacaaaacccttaaagcgagagtcgagaaaaaaagatggacaagaaagagtataaaccaaagaaactatccaaatcacggtccggcaccttcatgattcagagatgcacacagctcaaacgccatgacgaaccacaagaacaagaatatcaccggattcctcctcctcctcgtccccatgccagaggaacttcacaagaacacaaacccgaaagaacttaagcaccaaagcccgctgagctcgcgtcccctcttcccccgatctttcttccccacccctctccagcaattcaagaacgggaccgcgtggtttgctctcgtgaccccctaaattccaagcagaaacccaggggggagcgaaacagaatatcgaatttgccgccaaagaacgaatcaacaaagcggggttgcaaccagctcaactaccccgaatcgcttgctcaagaagaagcctaacctaaccttgctggtggatcagacagaagaagaagaagaagaactagtaccagtatactagcgaatagtagaaaacagaatgcggagaaggggggcgaaagtgacgtggccgtatgaatcggcgtggctggcggtgcgacgcgttagcgtagcgtcgatgcgcacgcgagaatggtgagaatccg
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| CDS seq | atggggacgaggaggaggaggaatccggtgatattcttgttcttgtggttcgtcatggcgtttgagctgtgtgcatctctgaatcatgaaggtgtcgctcttatgaggtttaaagagatgattgatgctgacccatttgatgctctgttggattgggatgaagggaacgccagcccctgttcttggttcggtgtggagtgctcggatgatggtcgagttgtggccctgaacttaccaaatcttggtctaaagggtatgctacctcaggagattggaacacttgcccatatgcgttccatcattctacacaataactctttctatggaatcatccccacagagatgaaatatttacatgagttaaaggtgttggatctaggatacaatactttcagcggaccatttccatcggagctaagaaatattttatccctgaaatttctctttctcgaaggcaacaaactttctggcagtttgccaattgaatatgagctcgcctcgatggaccagacttctttaaataagatatctacagaaagtaggaacgaagagaatgccacaagaagaaaacttctagcaagcaaacaaaaacgttcccaaaagaacaggatgcttttgtctggaacatctgaatcaccactggaaaatgttacaatgccaaagtctcaccctgataatataacagtgccacatcgtcccgtagctcctcgatcaagttctccacagccgccactcccttccgaacccattccctcccctgccccttctatgccctcccctgccccttctgtatccaccactacaaacggaacttcaggccaagaaaacaagagcaagacagcaatatatgcatccatcggaggagtggcctgcttggtggttgtggccatgtcagctgcactcatcctttgttaccggcacaggaagactagtactgtggtacctttttctccaacagcaagtgggcaattacatactgctactttgggaggaataactaaattcaaacgctcagagcttgaaacagcctgtgaaggtttcagcaacataattgacacactacctagattcacattgtataaaggaactctcccgtgtggagcagaaatagctgctgtgtctacattggtgacttacgcaagtgggtggacaactgtagctgaagcacaattcaaggataaggttgaagtcttatcaaaagtgagccataagaatttaatgaaccttgtgggttactgtgaagatgaagaaccattcactcggatgatggtgtttgagtatgtttcaaatggaacactgtttgaacacttgcatgttaaagaagcagaccaattagactggcagtcatgcttacggatagcgatgggagtgatgtactgtctgaactacatgcaacagctgaaccctcctgtactgctgagagacctaagtacttcttgcatatacttgactgaagacaatgctgcaaaggtttccgacatcagtttttggggtgataaaaaagaagacgaaaaatctgaggcttctgatgagcacatcacagtttataagtttgctttgcttctgcttgagacaatctctggaaggcgcccatattctgatgattatggcctccttattctttgggcacatagatacctcattggtgacaaacccctgatggacatggttgaccccacactcaaatcagtccctgaggagcaagtcagagaactcacaaagctggtgaaattatgcttaagtgaagatcccatggagaggccaacggtggcagaggtaaccgcatggatgcaagagatcactgggatttctgaagaagaggcgattccaaaaaatagtccgttgtggtgggctgaacttgagatcatcacatcataa
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| Protein seq | MGTRRRRNPVIFLFLWFVMAFELCASLNHEGVALMRFKEMIDADPFDALLDWDEGNASPCSWFGVECSDDGRVVALNLPNLGLKGMLPQEIGTLAHMRSIILHNNSFYGIIPTEMKYLHELKVLDLGYNTFSGPFPSELRNILSLKFLFLEGNKLSGSLPIEYELASMDQTSLNKISTESRNEENATRRKLLASKQKRSQKNRMLLSGTSESPLENVTMPKSHPDNITVPHRPVAPRSSSPQPPLPSEPIPSPAPSMPSPAPSVSTTTNGTSGQENKSKTAIYASIGGVACLVVVAMSAALILCYRHRKTSTVVPFSPTASGQLHTATLGGITKFKRSELETACEGFSNIIDTLPRFTLYKGTLPCGAEIAAVSTLVTYASGWTTVAEAQFKDKVEVLSKVSHKNLMNLVGYCEDEEPFTRMMVFEYVSNGTLFEHLHVKEADQLDWQSCLRIAMGVMYCLNYMQQLNPPVLLRDLSTSCIYLTEDNAAKVSDISFWGDKKEDEKSEASDEHITVYKFALLLLETISGRRPYSDDYGLLILWAHRYLIGDKPLMDMVDPTLKSVPEEQVRELTKLVKLCLSEDPMERPTVAEVTAWMQEITGISEEEAIPKNSPLWWAELEIITS |
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| Function | Protein MALE DISCOVERER 1 [UniProtKB/Swiss-Prot:C0LGU7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0020280 | OsCMeo_05g0020280.01 | Chr05 | 23638260 | 23642646 | - | NAM | ||
| CDS seq | atggggacgaggaggaggaggaatccggtgatattcttgttcttgtggttcgtcatggcgtttgagctgtgtgcatctctgaatcatgaaggtgtcgctcttatgaggtttaaagagatgattgatgctgacccatttgatgctctgttggattgggatgaagggaacgccagcccctgttcttggttcggtgtggagtgctcggatgatggtcgagttgtggccctgaacttaccaaatcttggtctaaagggtatgctacctcaggagattggaacacttgcccatatgcgttccatcattctacacaataactctttctatggaatcatccccacagagatgaaatatttacatgagttaaaggtgttggatctaggatacaatactttcagcggaccatttccatcggagctaagaaatattttatccctgaaatttctctttctcgaaggcaacaaactttctggcagtttgccaattgaatatgagctcgcctcgatggaccagacttctttaaataagatatctacagaaagtaggaacgaagagaatgccacaagaagaaaacttctagcaagcaaacaaaaacgttcccaaaagaacaggatgcttttgtctggaacatctgaatcaccactggaaaatgttacaatgccaaagtctcaccctgataatataacagtgccacatcgtcccgtagctcctcgatcaagttctccacagccgccactcccttccgaacccattccctcccctgccccttctatgccctcccctgccccttctgtatccaccactacaaacggaacttcaggccaagaaaacaagagcaagacagcaatatatgcatccatcggaggagtggcctgcttggtggttgtggccatgtcagctgcactcatcctttgttaccggcacaggaagactagtactgtggtacctttttctccaacagcaagtgggcaattacatactgctactttgggaggaataactaaattcaaacgctcagagcttgaaacagcctgtgaaggtttcagcaacataattgacacactacctagattcacattgtataaaggaactctcccgtgtggagcagaaatagctgctgtgtctacattggtgacttacgcaagtgggtggacaactgtagctgaagcacaattcaaggataaggttgaagtcttatcaaaagtgagccataagaatttaatgaaccttgtgggttactgtgaagatgaagaaccattcactcggatgatggtgtttgagtatgtttcaaatggaacactgtttgaacacttgcatgttaaagaagcagaccaattagactggcagtcatgcttacggatagcgatgggagtgatgtactgtctgaactacatgcaacagctgaaccctcctgtactgctgagagacctaagtacttcttgcatatacttgactgaagacaatgctgcaaaggtttccgacatcagtttttggggtgataaaaaagaagacgaaaaatctgaggcttctgatgagcacatcacagtttataagtttgctttgcttctgcttgagacaatctctggaaggcgcccatattctgatgattatggcctccttattctttgggcacatagatacctcattggtgacaaacccctgatggacatggttgaccccacactcaaatcagtccctgaggagcaagtcagagaactcacaaagctggtgaaattatgcttaagtgaagatcccatggagaggccaacggtggcagaggtaaccgcatggatgcaagagatcactgggatttctgaagaagaggcgattccaaaaaatagtccgttgtggtgggctgaacttgagatcatcacatcataa
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| Protein seq | MGTRRRRNPVIFLFLWFVMAFELCASLNHEGVALMRFKEMIDADPFDALLDWDEGNASPCSWFGVECSDDGRVVALNLPNLGLKGMLPQEIGTLAHMRSIILHNNSFYGIIPTEMKYLHELKVLDLGYNTFSGPFPSELRNILSLKFLFLEGNKLSGSLPIEYELASMDQTSLNKISTESRNEENATRRKLLASKQKRSQKNRMLLSGTSESPLENVTMPKSHPDNITVPHRPVAPRSSSPQPPLPSEPIPSPAPSMPSPAPSVSTTTNGTSGQENKSKTAIYASIGGVACLVVVAMSAALILCYRHRKTSTVVPFSPTASGQLHTATLGGITKFKRSELETACEGFSNIIDTLPRFTLYKGTLPCGAEIAAVSTLVTYASGWTTVAEAQFKDKVEVLSKVSHKNLMNLVGYCEDEEPFTRMMVFEYVSNGTLFEHLHVKEADQLDWQSCLRIAMGVMYCLNYMQQLNPPVLLRDLSTSCIYLTEDNAAKVSDISFWGDKKEDEKSEASDEHITVYKFALLLLETISGRRPYSDDYGLLILWAHRYLIGDKPLMDMVDPTLKSVPEEQVRELTKLVKLCLSEDPMERPTVAEVTAWMQEITGISEEEAIPKNSPLWWAELEIITS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.470883 | 2.465201 | 4.770557 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0471000 | RBH | 1.698666 | 2.311589 | 2.310754 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g39410 | RBH | 1.103762 | 1.433527 | 0.592956 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0471000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020450 | RBH | 1.052907 | 6.954589 | 2.190202 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0020400 | RBH | 0.413228 | 3.546088 | 0.719245 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0037340 | SBH | 4.309937 | 121.433617 | 44.122616 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0020280 | RBH | 0.048297 | 0.055439 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020420 | RBH | 10.157139 | 1.183108 | 4.131652 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0434100 | SBH | 2.1018675 | 46.7803705 | 1.4360025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0020010 | RBH | 0.252701 | 0.438526 | 0.608860 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0368800 | RBH | 6.694638 | 20.385088 | 5.798865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0020240 | RBH | 0.440930 | 0.044791 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0020240 | RBH | 1.164308 | 1.137011 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0020300 | RBH | 6.297991 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0020380 | RBH | 0.491804 | 0.344087 | 0.473773 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0020390 | RBH | 0.160256 | 3.664230 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019860 | RBH | 0.443587 | 0.486361 | 1.351612 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0020280 | RBH | 1.733220 | 13.693264 | 6.914872 |
