Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0019860 | OGI:05061850 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:23270333-23272910 | ||||||||
| Gene Symbol | RLCK188, OsRLCK188 | ||||||||||
| DNA seq | gataaattgggtgtatccaattgatgatcagagtgtacaaagccatacgttttaaaccatttagcatgttcgttattatcacaacaaaaaacatttacttgttgaagccccaccccccaatttacattgtccacggcctctgagaaacgtcaaaaaaaataactcaggtatacaactccttccacatcaaaccatctctggtttaatcacctgatccttcaaattaagcgtttaacatttgatcttcttctcgcttccacaataatatcatttgacaaagtttcccttattattgctcctctgcatcttcttcctcctcttcctccccttcctcttcttcgttgtcgttgtcgtcgtcgtcgtcgtccgaggaagacgacgacgagctatcagagtgatctgattttggtgcaggggaggcagatggagctggggctgggacgctggcagctggtggatccggtggcagtgaggtcaggaagcccagcgtcatgacaacgtcggccatcaacggccgcacggagtcttcctcctgcaagcacatcgcggccatggcgaccacctggttcaatgcctttgctgcgtactcgctcttgatgagtggatccaccagctcgtgatatctcttctggtctttaaacatcggcattgcctgaaaaatatgcaatgcagatcgcaattcacaaagatgccattagcaaactgaatcataatgctattgctataatgctattgcatctttcataatttctttgggagaaatgttgcattatttctgttcaaaatgcaaaggtttttaaattcagatttcggcatgcagaatgcagaatcgatggtatatctgcattgcactattgcatcgaccaaattggctgaaaataactgagctaaacatcacaatttccatggcgaacttacccaggcgaccacgttctgctcctccgtgggcttgtcggggtcgatggctctcctgccggagatgagctgcaccagcacgacgccgaagctgtagacgtcggacttcatggtggcctggccgctgcggtcgtactccggcgcgcagcagccgaacgagcccatcatcggagccggcgcgttgccgcccacctggccgagctgcgcgagcccgaagtcggacagcttcggcgtgagggcgtcgtcgagcaggacgttggacgccttgaagtcgccgtacaccaccggcgggctcgccttctcgtgcaggtactccagcccctgcgctgcgccgtacgccaccttcatcctcgtgcaccagtccatcggcttcttgtccgccggcaaatctgccgacgacgacgatgcaacaataacagaacaatggacaatctcattatcgtcgtcttagagtattcgttcgcgttgcggcgtgtggtgggtgtgcgtaccgaacaagtgttcttccaagttgccggcggacatgaactcgtagacgaggagccgctggtcgccgtcggcgcagtagccgatgatgtcgacgaggttgtcgtggtggagccggctgagcttcgagacctcgtccaggaactcattgttgccttggaagccatgcctgtccagctgcttgatgaccacggtctgatcatgcacaaaaaaaCaaagaaaaaacataattagttcttgtttatgcgaagtgatcactgcgctgctcgatgaaatagatgtgagattgttggtgagcacgtacctgcccagtcttctccagttgacccttgtagacccggaagaagccgccttctccgatgaggttgtacggcgtgaagtggtcggtggccgcggcgagctcgcggaacgcgaacgcctgcccggcgatggcgagccccgccgaggcgtcctcggatggcttgggggcctgatctgcatggagagaccgcgcgcgcgcattagccaattggaagccatggtcaatgtgggatcatcgaactagccaagaaatcggatcgaggaagctatcactcaccgggcctgggcggcgtcatgggcgcggccgcgggcgcgggcggcgtcatctgcgacgcgggcgccgcatccgcgtcgtcgaaccgcgccgtgtcggcactcaggctcttcttctttccgccgccgaagcacgggaagcagctcatcttcgcgccccctccctgcctccccgtggcggccaccaccaccacccctgtccgccgccgccgccgccgccgccagccaaagaagaaaaagaaagacgcacggaccgaccaccgaggagcagccgcgccgcgccgatcacacaaccatcgcgcgcgagcccgcccgtctcaccacctccgccgcggcgcgcccacctcgtggcacgccatccgcgcacacacgcacgctgtcgtcctggccccccacgcgcgcacccgatccgcccgcgcgtccgcccgcgggaagagagaagggggcgatcgatcgatcgatcgcgccggggcgcgcgcgcgcgtggagggggggaaggagagggcgatggggggttgggggagatggaaggtgggggaggagggtgggagattgggggagaaggccttggagagggatccaagggccttctctggaaggaggg
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| CDS seq | atgagctgcttcccgtgcttcggcggcggaaagaagaagagcctgagtgccgacacggcgcggttcgacgacgcggatgcggcgcccgcgtcgcagatgacgccgcccgcgcccgcggccgcgcccatgacgccgcccaggcccgatcaggcccccaagccatccgaggacgcctcggcggggctcgccatcgccgggcaggcgttcgcgttccgcgagctcgccgcggccaccgaccacttcacgccgtacaacctcatcggagaaggcggcttcttccgggtctacaagggtcaactggagaagactgggcagaccgtggtcatcaagcagctggacaggcatggcttccaaggcaacaatgagttcctggacgaggtctcgaagctcagccggctccaccacgacaacctcgtcgacatcatcggctactgcgccgacggcgaccagcggctcctcgtctacgagttcatgtccgccggcaacttggaagaacacttgttcgatttgccggcggacaagaagccgatggactggtgcacgaggatgaaggtggcgtacggcgcagcgcaggggctggagtacctgcacgagaaggcgagcccgccggtggtgtacggcgacttcaaggcgtccaacgtcctgctcgacgacgccctcacgccgaagctgtccgacttcgggctcgcgcagctcggccaggtgggcggcaacgcgccggctccgatgatgggctcgttcggctgctgcgcgccggagtacgaccgcagcggccaggccaccatgaagtccgacgtctacagcttcggcgtcgtgctggtgcagctcatctccggcaggagagccatcgaccccgacaagcccacggaggagcagaacgtggtcgcctgggcaatgccgatgtttaaagaccagaagagatatcacgagctggtggatccactcatcaagagcgagtacgcagcaaaggcattgaaccaggtggtcgccatggccgcgatgtgcttgcaggaggaagactccgtgcggccgttgatggccgacgttgtcatgacgctgggcttcctgacctcactgccaccggatccaccagctgccagcgtcccagccccagctccatctgcctcccctgcaccaaaatcagatcactctgatagctcgtcgtcgtcttcctcggacgacgacgacgacgacaacgacaacgaagaagaggaaggggaggaagaggaggaagaagatgcagaggagcaataa
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| Protein seq | MSCFPCFGGGKKKSLSADTARFDDADAAPASQMTPPAPAAAPMTPPRPDQAPKPSEDASAGLAIAGQAFAFRELAAATDHFTPYNLIGEGGFFRVYKGQLEKTGQTVVIKQLDRHGFQGNNEFLDEVSKLSRLHHDNLVDIIGYCADGDQRLLVYEFMSAGNLEEHLFDLPADKKPMDWCTRMKVAYGAAQGLEYLHEKASPPVVYGDFKASNVLLDDALTPKLSDFGLAQLGQVGGNAPAPMMGSFGCCAPEYDRSGQATMKSDVYSFGVVLVQLISGRRAIDPDKPTEEQNVVAWAMPMFKDQKRYHELVDPLIKSEYAAKALNQVVAMAAMCLQEEDSVRPLMADVVMTLGFLTSLPPDPPAASVPAPAPSASPAPKSDHSDSSSSSSSDDDDDDNDNEEEEGEEEEEEDAEEQ |
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| Function | Probable serine/threonine-protein kinase PBL26 [UniProtKB/Swiss-Prot:Q9SFT7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0019860 | OsCMeo_05g0019860.01 | Chr05 | 23270333 | 23272910 | - | NAM | ||
| CDS seq | atgagctgcttcccgtgcttcggcggcggaaagaagaagagcctgagtgccgacacggcgcggttcgacgacgcggatgcggcgcccgcgtcgcagatgacgccgcccgcgcccgcggccgcgcccatgacgccgcccaggcccgatcaggcccccaagccatccgaggacgcctcggcggggctcgccatcgccgggcaggcgttcgcgttccgcgagctcgccgcggccaccgaccacttcacgccgtacaacctcatcggagaaggcggcttcttccgggtctacaagggtcaactggagaagactgggcagaccgtggtcatcaagcagctggacaggcatggcttccaaggcaacaatgagttcctggacgaggtctcgaagctcagccggctccaccacgacaacctcgtcgacatcatcggctactgcgccgacggcgaccagcggctcctcgtctacgagttcatgtccgccggcaacttggaagaacacttgttcgatttgccggcggacaagaagccgatggactggtgcacgaggatgaaggtggcgtacggcgcagcgcaggggctggagtacctgcacgagaaggcgagcccgccggtggtgtacggcgacttcaaggcgtccaacgtcctgctcgacgacgccctcacgccgaagctgtccgacttcgggctcgcgcagctcggccaggtgggcggcaacgcgccggctccgatgatgggctcgttcggctgctgcgcgccggagtacgaccgcagcggccaggccaccatgaagtccgacgtctacagcttcggcgtcgtgctggtgcagctcatctccggcaggagagccatcgaccccgacaagcccacggaggagcagaacgtggtcgcctgggcaatgccgatgtttaaagaccagaagagatatcacgagctggtggatccactcatcaagagcgagtacgcagcaaaggcattgaaccaggtggtcgccatggccgcgatgtgcttgcaggaggaagactccgtgcggccgttgatggccgacgttgtcatgacgctgggcttcctgacctcactgccaccggatccaccagctgccagcgtcccagccccagctccatctgcctcccctgcaccaaaatcagatcactctgatagctcgtcgtcgtcttcctcggacgacgacgacgacgacaacgacaacgaagaagaggaaggggaggaagaggaggaagaagatgcagaggagcaataa
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| Protein seq | MSCFPCFGGGKKKSLSADTARFDDADAAPASQMTPPAPAAAPMTPPRPDQAPKPSEDASAGLAIAGQAFAFRELAAATDHFTPYNLIGEGGFFRVYKGQLEKTGQTVVIKQLDRHGFQGNNEFLDEVSKLSRLHHDNLVDIIGYCADGDQRLLVYEFMSAGNLEEHLFDLPADKKPMDWCTRMKVAYGAAQGLEYLHEKASPPVVYGDFKASNVLLDDALTPKLSDFGLAQLGQVGGNAPAPMMGSFGCCAPEYDRSGQATMKSDVYSFGVVLVQLISGRRAIDPDKPTEEQNVVAWAMPMFKDQKRYHELVDPLIKSEYAAKALNQVVAMAAMCLQEEDSVRPLMADVVMTLGFLTSLPPDPPAASVPAPAPSASPAPKSDHSDSSSSSSSDDDDDDNDNEEEEGEEEEEEDAEEQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.716791 | 15.401501 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0463000 | RBH | 0.0 | 0.0 | 12.206434 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38770 | RBH | 0.0 | 0.0 | 3.139532 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0463000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0020040 | RBH | 0.0 | 0.0 | 7.857715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019980 | RBH | 0.0 | 0.000000 | 10.177083 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038070 | SBH | 6.270092 | 20.618416 | 14.957815 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019860 | RBH | 0.0 | 0.029582 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0020000 | RBH | 0.0 | 13.621537 | 9.968404 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0352100 | RBH | 0 | 0.0151755 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019590 | RBH | 0.0 | 0.788069 | 7.067761 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0362200 | RBH | 0.008404 | 0 | 0.0182515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019830 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019810 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019880 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019970 | RBH | 0.0 | 0.451591 | 1.644826 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019980 | RBH | 0.0 | 5.476031 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G019460 | RBH | 0.0 | 2.587074 | 3.528444 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019820 | RBH | 0.0 | 0.0 | 23.738211 |
