Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0019370 | OGI:05060880 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:22919567-22922784 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcgtgacacctccttcctctcgaagcaaagccgaggacgtacgacgacgacttccccacggccagagttcccctctttccccttcccaatcctccgatctcatcccccggctccggcgacgcggcggggcgatgcgtagctgctgagcgcgcggcgccacgaccccccccacctcgagagcgcggccatggacgagggctacgccaacctccccaccagccacctcctcggctccgtccccgtaaccgatcccctccctcccccctcctcctatccgcttcgcgtgtctcgttttttgtgtgatgttatgtggtgtgatgattcgggtgtgatggtttctgtaggccgccttgacccccgaagagaggaagccctcacccgtcgccgaaggtagcaaccccccctcgattgcgtgttgggtttcaaggttagtgccattgcgattgtcacggattgctgattaggtttcggttggaaatgcagttggcacctcgcgtctgcagcagtttcctcctgctcttggtggtactggtggtgttggtggaggaggaggagggtaccagcctccagggacccctgcaggtaacaacaggtcgcagcgttaaaagcgtcggcacatcctgcattaggttcttccgagtattctgttggacagcgctaccgctatccgattagtgggtatgttttggtgcaatggctagttctgtggtgtacttgcttatggggttatattggaatgccaagtcccaagagtatataacaggctaaggcttcttacaatggaaatgatgggttcaagagcacatcgcactccggaagaaataattttcgttgcttagcttagtgatggcgttatattctatttcatttcgaatgaactacgtcccatgattttcctcccgaatactattaatatggctgcaaagtattaccctggtactgctttgatgttttcttttaaggttcatgtgcaaaaaagtacttagggagttagggtagagcaaggctcacaaaacagcaatatgttgattggatagagtagctccatagaaataaatcttgcagtgtgatttttttatcttgtagatagccaagaacctcagagcatcatttgcttgaattatttgtttgaggtggctgttgtatggagtgctgcctagtgtgcactaaacaaaatgctcagatcctcagagaaaaatatgatagtggactagtggtattctaaccatttccaactgatgcaagaactacaccttctttttcgttatatattactttcaaatttgatccctgtcaattgttatgtttcagttagtgcaatgattgcactttactcaaagctggatcttagatggtatgatactgattatcttttcccatgtgttgctccttacttttgcagatggagatgtagaaactcaaacaaattggaaaggatacttcaatgttgcatcttatgctccatatttcaatgttgatactgatgttgtagttgacaggctcatcagctcggtttatccaatggatgggtttttcaggaagattgatgctaatcctgacatgtaagtatctcctattaggctattaccaatctgtggtcacccttcacgtttaaaaaattcgaccttaagtacctgctggtattgatgtcataatttctaatgaatggattcatgatgataggatacaattacagcgaaggatcatagaattgtttgtctacattatataatgtgttgttaatgtgcaagtgatgttttaagttgcatataacatgccataaatatgttttgaagcagtttcagcgtgacatagacatttggataggtgaagtactgtatattttacaaaactatgttgtaacagtgctaaggcatatgctgcaataatcgagattatttatctaggactagaagcatgattttaaggaggagaaggacatgcaggttttttcaagggacttttgacccattgttgtattggtgcatttctgtagtaactcatctatgcttttgcattgtaataattttgatacctggagccaacttattcatatgcgataaatcattctgctgtttgcaggtatgggcccttatggatcacaacaacactgatattcatgctagctgcatttggaaactttgccacttatctgatgcaaaggaaaacagacctgaacatatggagctttgatgttggctatttcaactgggcagcatcggtcatgtatggttatgctgccgcagtgcctgctatattctttttcctgtttcagtattttggatcacgcccaagccttgttcggttttggtgcatgtggggatactctctgtttatcttcatcccagcatctgtaagtattcacagtaatccatttctttgatggttcggagatgtagtctcagaaataactgtcagtgaaaataatccatgatgtaccagcatttaggcttgcacctcctgctcctgctcaagaaggctgctatgtctaatgcaggcactaattttctttgcttcaggtactgttacttattcctgtggaatttcttcgatgggtcatcataatccttgttggtggtgcttcatcttggttcatctccttaaacttaaaggaatgtactgagggagctgatatgatggttttgattgctagtgctgcagtgctccagtttactctggcactgttcatcaaagttttctttttcgcctgagattgtcttttggtgttgctcaggtctgcctctcttttttaccttctacgactagataccatagcatcataaccttcccaacagtacacagaccacgcctttatgaattttatttagtagtcttttattgtagcagttcattatcaaattgggttaaaatattctaatacattatattttgcttttgacaggtgagcttgatgttttgtctgctccaatcattctgttctggcgagcatccttttgaggaccaagcggagtagttttacttgacatacatattgacactagattgatagacctttgtgttttgtgttcatgagttttttttactcctttagttcacagaacttcactgtatgtttcaattcggaattgctgagtttgtcatctaaaattgcatagtgaaccttcgaccattttgatctacaataaccatttgactatattttgacaaatagcgtgtttctgctcttggttgagtgattgacacctttttttagtttg
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| CDS seq | atggacgagggctacgccaacctccccaccagccacctcctcggctccgtccccgccgccttgacccccgaagagaggaagccctcacccgtcgccgaagttggcacctcgcgtctgcagcagtttcctcctgctcttggtggtactggtggtgttggtggaggaggaggagggtaccagcctccagggacccctgcagatggagatgtagaaactcaaacaaattggaaaggatacttcaatgttgcatcttatgctccatatttcaatgttgatactgatgttgtagttgacaggctcatcagctcggtttatccaatggatgggtttttcaggaagattgatgctaatcctgacatgtatgggcccttatggatcacaacaacactgatattcatgctagctgcatttggaaactttgccacttatctgatgcaaaggaaaacagacctgaacatatggagctttgatgttggctatttcaactgggcagcatcggtcatgtatggttatgctgccgcagtgcctgctatattctttttcctgtttcagtattttggatcacgcccaagccttgttcggttttggtgcatgtggggatactctctgtttatcttcatcccagcatctgtactgttacttattcctgtggaatttcttcgatgggtcatcataatccttgttggtggtgcttcatcttggttcatctccttaaacttaaaggaatgtactgagggagctgatatgatggttttgattgctagtgctgcagtgctccagtttactctggcactgttcatcaaagttttctttttcgcctga
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| Protein seq | MDEGYANLPTSHLLGSVPAALTPEERKPSPVAEVGTSRLQQFPPALGGTGGVGGGGGGYQPPGTPADGDVETQTNWKGYFNVASYAPYFNVDTDVVVDRLISSVYPMDGFFRKIDANPDMYGPLWITTTLIFMLAAFGNFATYLMQRKTDLNIWSFDVGYFNWAASVMYGYAAAVPAIFFFLFQYFGSRPSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGASSWFISLNLKECTEGADMMVLIASAAVLQFTLALFIKVFFFA |
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| Function | Protein YIPF1 homolog [UniProtKB/Swiss-Prot:Q54TS4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0019370 | OsCMeo_05g0019370.03 | Chr05 | 22919567 | 22922784 | + | NAM | ||
| CDS seq | atggacgagggctacgccaacctccccaccagccacctcctcggctccgtccccgccgccttgacccccgaagagaggaagccctcacccgtcgccgaagttggcacctcgcgtctgcagcagtttcctcctgctcttggtggtactggtggtgttggtggaggaggaggagggtaccagcctccagggacccctgcagatggagatgtagaaactcaaacaaattggaaaggatacttcaatgttgcatcttatgctccatatttcaatgttgatactgatgttgtagttgacaggctcatcagctcggtttatccaatggatgggtttttcaggaagattgatgctaatcctgacatgtatgggcccttatggatcacaacaacactgatattcatgctagctgcatttggaaactttgccacttatctgatgcaaaggaaaacagacctgaacatatggagctttgatgttggctatttcaactgggcagcatcggtcatgtatggttatgctgccgcagtgcctgctatattctttttcctgtttcagtattttggatcacgcccaagccttgttcggttttggtgcatgtggggatactctctgtttatcttcatcccagcatctgtactgttacttattcctgtggaatttcttcgatgggtcatcataatccttgttggtggtgcttcatcttggttcatctccttaaacttaaaggaatgtactgagggagctgatatgatggttttgattgctagtgctgcagtgctccagtttactctggcactgttcatcaaagttttctttttcgcctga
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| Protein seq | MDEGYANLPTSHLLGSVPAALTPEERKPSPVAEVGTSRLQQFPPALGGTGGVGGGGGGYQPPGTPADGDVETQTNWKGYFNVASYAPYFNVDTDVVVDRLISSVYPMDGFFRKIDANPDMYGPLWITTTLIFMLAAFGNFATYLMQRKTDLNIWSFDVGYFNWAASVMYGYAAAVPAIFFFLFQYFGSRPSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGASSWFISLNLKECTEGADMMVLIASAAVLQFTLALFIKVFFFA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0019370 | OsCMeo_05g0019370.01 | Chr05 | 22919567 | 22922784 | + | NAM | ||
| CDS seq | atggacgagggctacgccaacctccccaccagccacctcctcggctccgtccccgccgccttgacccccgaagagaggaagccctcacccgtcgccgaagttggcacctcgcgtctgcagcagtttcctcctgctcttggtggtactggtggtgttggtggaggaggaggagggtaccagcctccagggacccctgcagatggagatgtagaaactcaaacaaattggaaaggatacttcaatgttgcatcttatgctccatatttcaatgttgatactgatgttgtagttgacaggctcatcagctcggtttatccaatggatgggtttttcaggaagattgatgctaatcctgacatgtatgggcccttatggatcacaacaacactgatattcatgctagctgcatttggaaactttgccacttatctgatgcaaaggaaaacagacctgaacatatggagctttgatgttggctatttcaactgggcagcatcggtcatgtatggttatgctgccgcagtgcctgctatattctttttcctgtttcagtattttggatcacgcccaagccttgttcggttttggtgcatgtggggatactctctgtttatcttcatcccagcatctgcttgcacctcctgctcctgctcaagaaggctgctatgtctaatgcaggcactaattttctttgcttcaggtgagcttgatgttttgtctgctccaatcattctgttctggcgagcatccttttga
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| Protein seq | MDEGYANLPTSHLLGSVPAALTPEERKPSPVAEVGTSRLQQFPPALGGTGGVGGGGGGYQPPGTPADGDVETQTNWKGYFNVASYAPYFNVDTDVVVDRLISSVYPMDGFFRKIDANPDMYGPLWITTTLIFMLAAFGNFATYLMQRKTDLNIWSFDVGYFNWAASVMYGYAAAVPAIFFFLFQYFGSRPSLVRFWCMWGYSLFIFIPASACTSCSCSRRLLCLMQALIFFASGELDVLSAPIILFWRASF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0019370 | OsCMeo_05g0019370.02 | Chr05 | 22919567 | 22922784 | + | NAM | ||
| CDS seq | atggacgagggctacgccaacctccccaccagccacctcctcggctccgtccccgccgccttgacccccgaagagaggaagccctcacccgtcgccgaagttggcacctcgcgtctgcagcagtttcctcctgctcttggtggtactggtggtgttggtggaggaggaggagggtaccagcctccagggacccctgcagatggagatgtagaaactcaaacaaattggaaaggatacttcaatgttgcatcttatgctccatatttcaatgttgatactgatgttgtagttgacaggctcatcagctcggtttatccaatggatgggtttttcaggaagattgatgctaatcctgacatgtatgggcccttatggatcacaacaacactgatattcatgctagctgcatttggaaactttgccacttatctgatgcaaaggaaaacagacctgaacatatggagctttgatgttggctatttcaactgggcagcatcggtcatgtatggttatgctgccgcagtgcctgctatattctttttcctgtttcagtattttggatcacgcccaagccttgttcggttttggtgcatgtggggatactctctgtttatcttcatcccagcatctgtactgttacttattcctgtggaatttcttcgatgggtcatcataatccttgttggtggtgcttcatcttggttcatctccttaaacttaaaggaatgtactgagggagctgatatgatggttttgattgctagtgctgcagtgctccagtttactctggcactgttcatcaaagttttctttttcgcctga
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| Protein seq | MDEGYANLPTSHLLGSVPAALTPEERKPSPVAEVGTSRLQQFPPALGGTGGVGGGGGGYQPPGTPADGDVETQTNWKGYFNVASYAPYFNVDTDVVVDRLISSVYPMDGFFRKIDANPDMYGPLWITTTLIFMLAAFGNFATYLMQRKTDLNIWSFDVGYFNWAASVMYGYAAAVPAIFFFLFQYFGSRPSLVRFWCMWGYSLFIFIPASVLLLIPVEFLRWVIIILVGGASSWFISLNLKECTEGADMMVLIASAAVLQFTLALFIKVFFFA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr05 | 22922086 | 22922784 | + | OsCMeo_05g0019370.02 | OsCMeo_05g0019370.02,OsCMeo_05g0019370.03 | All |
| MX | Chr05 | 22921919 | 22922469 | + | OsCMeo_05g0019370.01 | OsCMeo_05g0019370.01,OsCMeo_05g0019370.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.641762 | 17.393368 | 8.029130 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0455800 | RBH | 2.363852 | 1.580716 | 8.815176 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g38180 | RBH | 0.984785 | 0.995005 | 2.095541 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0455800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0019550 | RBH | 0.667914 | 15.118747 | 8.779035 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0019490 | RBH | 0.361453 | 11.214663 | 2.017635 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0019370 | RBH | 0.127201 | 0.381597 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0019520 | RBH | 6.197490 | 16.151093 | 16.225573 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0345800 | RBH | 3.230064 | 7.702409 | 5.2110105 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0019100 | RBH | 0.202542 | 1.799471 | 2.442184 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0356100 | RBH | 2.227095 | 4.632759 | 5.4463705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0019350 | RBH | 0.079977 | 0.208074 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0019320 | RBH | 0.123078 | 6.108709 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0019390 | RBH | 4.700260 | 16.520496 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0019490 | RBH | 0.892744 | 1.970042 | 1.785522 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0019500 | RBH | 0.303406 | 8.095516 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018980 | RBH | 0.782231 | 5.929735 | 3.968823 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0019340 | RBH | 0.319387 | 46.639637 | 10.612855 |
