Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0018560 | OGI:05058510 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:22119454-22127352 | ||||||||
| Gene Symbol | OsOFP23, OsOFP20 | ||||||||||
| DNA seq | atggcgccattgatgtcagggagtggtggtggtggttctgctcggcgccgcccgctgcggcagccgccggtggtggacgacgacgacgtcggctgcagctgccccaagcagaggctgctccgctcgctcctctcctcgctggtgtcccgcgcgcgcggcgcactaggcggcagggcggtgtcgaggcccaagtcgtccgcgccgccgtcttcgtcggcctccaccaccaccaccgccgccgccgccttcacctccacctccaccaccggcgccagcgccactaccgtcgactcctccaaggagtcgtggggccccgcgacgtacgccgccaccaacacgcacacgctgtacgaggtcgaggacgaggtgaggcggcagaggaggaaggacatgaggaggaggaggaggaggagggcggcggcgtgggacgaggaggaggaggaggaaggagcagcggcggtggcggtggcggtggaggtggagtcggcggcgccgtacgaggatttccgggagtcgatggtggcgatggtggtggagaaggagatgtacgcgtgggaggagctgaacgcgctgctccaccagttcctgaccctcaactcgccgcgccaccacgcgctcatcctccacgccttcgctgacctctgggccccgcgctccggcctcttctgccctccctccccgtgccaagctctctgatggtctggtcccacccaccagccgcaagcgattgagatcctttacaggcacggtttttgtcacgggcatgtatgggactggagatcatcggtccacatgttaatgaccaatgtgatatttcatctgttccaaaatattaaaatattagctagaatataatgtaatactttctattactaaaaaggtttttcctaaattcattacaatagaaagtatctaatcgtatactagatagtaacatttagaacgaaaatagtatgatctagccgtagcacaaatacgtattgtactctaactagctactctatatggtgtgcatgtgcatgggaagcacgacgtccgttgccctgcatgcatggttatgtgatatactattacaggattatcagccccatcgttctatgtatgtttatatttatagacaaaattttaattttaaaacttagcctatgaattgatcttgtgatttttttcatccacttattttacaatacttgttttttcaattactatgaagacgtaaaagaccacgtacataaaagtttataagttatttttttaagttgataataagttgtttgaatagtatatgcagaagcgaaaagatgaagccgtgtacatatgtgatgtcaaagtgacgtacatgattggggttatagagtgtaatcattctagtacgtgtgagtgggatgtcgagaagtggttattttttttagtttcgtcacatgagatggcggtttcatctatgtggaaatatggaattcatgtttggcgtgcggcaacactcggtgccgacagagtctggatctaagatgcgtacggatgtgtgtgcccagcgactacaaattaggtgtccaacttttcttcaaaaatgggacgatgtttcaccactactagaaaaatgtttcactaaaataaaaaaaatattttaaactattaaaaaatgtgaaacataattgatcacaattgaaacattttaatctcatagatgaaatatcaaagtttcaatcggtgaaacatcatggatgtgcaagaaattaaatcgaaggcaaaaaatatgaaacacaccatataagtatccaatgcaatatttttatccaaccttaaagaaacatccggctacattggctaaaacattgaaaactcacaaaagaatatgtatcaatccagatctagtttattcctcgtctccggtgattgctggctcctctagtcttcgctacaaatccacgtcgggacgacgtaagacccttctactccaccaaggtaggtagtactgctccccaagccttcatcaccccgtcatcgccggttaacaggggccacaccacctccaaatctacctggggcccttaatcttcgtccaacttttgtgtgttcaatgtccacgtgaccccacgagaagcccccccccccCAaaaaaaaaaaaagtggacgcggtgctcatggcagccgtgggatgatgatgtgaaggacacgagaagcatctctcgcccaccgccaagcacctgtgtgagagaaggaagagcgagaggggccacggagtggctgggaaggagcttgatattctcttatctggttgagagacagcagagagcaaaaaactttcaaatctaattatagcataattgtaatatagttccggtataactatactgtaactataatataacttttatataagtattaaaataataaatataacttcatatctaacttatatagagattacaacgtagttacaccacagttacactgcagttacagtgtaactatagtgtaattacatggtagttacactacaactatattatagttacatttgactgttttttgccccaaaaactgtcgactgttttttagcaactctgtatttcttttccatcgattaacccacgcaaagcattctccgataagtttctactttaagtagtatcgacagcttttgaatttttatttttttccatttctgcatattcttaaaattccattgcaaattgcaatgaagaccttttaatagaaaatttcaactcgaaattcactttttactaaaatttgtaattttatactcataatttaaatctttcaacttaaattcccaaaactttcaactaaaatttgaaaaatttcaacttaactatgtacttaacattttattgaagacatcattcaagtgctaagcactccccctacgtgcgacttgcgaactactcaattcgttcaaaaatataaaaattgatacgacaagatgagtaattataagccactcattgcaatacatgggaatctataatttttagctaatgagatgcttggaaaaaaaaccgaagcaattgaaaattttaaaagttgaccacttaagtgacaaaaagaattttttttctctaccttaatttttgctaagagaaacctaaaaatgctttgtatctttgctatttaaaaggtgttgtcctcctttcatcttgtccttctagaacacgccatgcgcgttcttactctacatatataaccgtcagatccactatgttattctcaatcactcttctagtttattgttaattataggacaaagtacgaattacctcccccctccccggaattattgtggtcggttgaattccccctgaactcgaaaaccagacataactcaccctgaacttttaatactggacaaattatcccccgcaacccaatccagagcgattttatcctacgtggtgtacacgtgtcaacccagtcagtattttctttttttaaaacatggtggtgcccacctgtcatatactctctctcttctctttcccccctctctcggcgaggacatagcgcggcggcggcgcgtgatgcggagggcgcggcgacactggacacggaggcggtggcggtgcaggatgcggtggcgaaggatgcggcggcggaggatgtggcggcggcggcggctgcggcgtgggatctcctcctaccgccggcccccgcaccgtccctgatctcggcacactccctctctcgtctccatcgtcgagcagcgggtagcgacgccggctctgtatcccatgcctccgccgccttcgcatcccacactgccgccgccaccgcctccgcatcccacgacacaaccgcccccacccccgcatcccgcgccgccgcggcctccgtgtctagcgctgccgcggcctccacgtcctgcgccgccgccgccgcggcctccgtgtccagcgctcccacgatgatgacgacgctgtagccactgcgctctgtgtcctcgccgagagagggagagagagtgagagaggggaagagaaggtagagagtatatgataggtgggtccatcatgttttaaaaaagaaaatactgactgggttgctacacgtacgccacgtaggataaaaccgctcagaagtgggtcgaggggggtaattcgtctggtattaaaagttcagagtgagtcatgtctgattttcgggttcagggggaattcggccgaccacgatatttttttttggggggagggggtaattcgtatttttccttgattatatgagtctaatccgttgtaaggtgtggaggatgttagaagggaataatttccgtatacattcgccgtactcccgatcgaccgtgcgcagaattcatgtgaaagcgtgttccatggggagaaacttgccaggtgcagacatatttgtgcgtgttgtaaagcaccaccttgacgtacggctcgatcctacctcgatagacgttgcttgtttgactgcttgggcagttgggctttccttcttggtaggcccatgtgtactctccgttgcagttgggaataagttcactttagatccctctatttatcgctcagtctgattttcgtctctaaaccgcaaaaccgggtacgacccatcccccaacttacgaaaatcgggcaaaggaggtccctcggtggttttgatagcggttttggctgacgtggcgcctacgtggctaatttgactcggtcttcatctgacgtggcactgacgtggcgcttacgtggcaatttgatctgaaaaaaataataaaaccagtgggacccacatgtcagtttcacacacaaatagaggaaaaaatggtgggacccacgtaggccccatatgtcatcctcactcctctctctatcctctctctcccctcttctctctatcccttctctctctccggccgatgaagcagggcgagcggcgggcgacgggcggggcgggacatggccgacggcgggtcaggtcgcggtgcgccagccattctcccgcagcgcctccttcttcgcggggagggcggcgaatctcccccatcgtccttcggattgccggcggcggcggtggctagccccacccccgtggtgaggtccgtcccgccggatagcttgcgctcggtgctccaggccttggtgtccgacgagtaggaccggcatgccgtgaagctacggcgcttgtagaggaccaacaggcggaaggcggcgggacccggtgggagcggatcggcggagtcctggagatcgtcggcggtgagcagcgcgcacgcgtagagcccgggcctgtccttcccggagaggacggggaggaggatggccatttcaccggtcaaggggttgcacacgacgagcttaatgttagttaaatcttgcgtgcatgtagctactaactgttagctatcggtttcaattctgttattgcattgtgcatgagcttccggtctatggatgctatgcatgtagtggtagtcatgctgaccttggcgatcggaggcgtgagcacgttgttaggatcgtggggatggacgcgattgtaccgcgacgtgggaacgcatccaatgcgctcacctgcataatgaaagggagaaagaaaaccagaaaaggtgcagcttcatcgcaccacaaaactcagcgtgtttcctcgtgttcgcatgtgtttccacagcttgttcgtcgatcacttagggaaacctgtcacttaagggcggcggagctcgacgacgagctggcctttccgtgatgcgacgaggcgggagttcttgaagaggccggggttgtcaaacaccctgtcaagctcgccgccgccgaacctggaggaggtcgagggcaacgggacgaaccgaggcggtgcgaccgaggaagacgagtcgtcctcgtgggtctggtggaagaagccgacggtgaggtcgcggatgaggtggctggagggcggcatggagcggcagatgtacaccacgttgccggtgaggtggtgacgaggcggcgccaccgcctgcaagtggcgcggtgcaccggacgaggtcgtgaagatccagcgagctagccgcaaacacgaggaggaggacctgacctagcccgccgtcagccgctgccccgccccgctctgccgaccagccgctccgccccgcctgtcgcccgcttctgccgtcgccgctcgccctattccatcggccggagagagaagggatagagagaagaggggagataggatagagagaagagggagaagtgaggatgacatgtggggcccacgtgggtcccaccatttttcctctatttgggtgtgaaactgatatgtgggttccactggttttattttttttcgatcaacttgccacgtaagcgccacgtcagatgaagaccgagtcaaattagccacgtaggcgccacgtcagctaaaaccgctatcaaaaccaccgagagacctcgtttgcccggttttcgtaagttgggggatggttcgtacctggttttgtggttcagggacgaaaatcagactgggcgacaaatagagggacctaaagtgaacttattccttgcagttgggctttaccaatttcaggcccatgatggtttcaatttttaaaattcttagtactgtcattattatatttcgaatgaaaatagcttgatgcggtgcggcgcctgcctgtttgttatcaagtgacatatcttccaagttgcaactaatattcccaacaaaacatagtgggatatgtgtataattcaagaggtacgagtaagtttcacgtcaatccatctatctatatatgtaaagctgagaggcctggtcgtgttgagcgttagttgcgtagttgacccatgatgagttggaaagctgggcacacgccggccaagagcaaactgtccagggcgcaaagacaattgctggctgatgtgcggtgctctatcattctactgtcattccatattcccattcaacttcgtacatccagctgccacgacagggcaaaatggccaatggcccagcatcacaaattctgcaaagctcaagatgatcaaacatcttcttcctcaatcagtcaagccgtactaacaacgaagttgtgcgtgcgtagtactgaagttgagaagtaccaaggacgtgccggtagcatccgtacatacgtgcggatgggaacaaacgaatgcaacgcaaatgctcatgcgtcgcgccggtgcgccagtaaagctgcactgcactgcactgcagcaccgatcgagaacgcaagcaagcaagctagctagctcacacacacacagaaaaaggctcgcagaggcagagagcctggaccacaccgcgcgacgcgccgcgcggctggctcttctaccctgcccctgctcgctgccgcacgcaggccgcagcgcctcacgttttattgccgtaccctgtgcctcccgccgtccgcagcacatgaaacttttacaagagaaaaaagtagcagcaacccggccggccatggcattcgcatgcttatacaacttttgcaagggctcgagttattaccgaagttattttgttgttgtcataactaataactgcgtgaatgaggtggtggtaggagcagtactagttcagcccactggagtttacactgttgagtgtatgtatagtagtacgatgcacaaacctgcaatatatagcctcgtgatggcactgcccacagtggatgacgcatcgagcccactggtggcgatggccgatggcgcaggtggggctagagagagtagaagccaaaggccgtggaccatgggggccaaaagattcttttatggaagtggtgccgtccgttctaaaatgaacaagaagctctcaaagactcaaaactatttaagggagacggacaagggcagcacagctgccacacggcggaccgcagctctggttggagcagacaagcacaagcagctgcccccatccacgtga
More
|
||||||||||
| CDS seq | atggcgccattgatgtcagggagtggtggtggtggttctgctcggcgccgcccgctgcggcagccgccggtggtggacgacgacgacgtcggctgcagctgccccaagcagaggctgctccgctcgctcctctcctcgctggtgtcccgcgcgcgcggcgcactaggcggcagggcggtgtcgaggcccaagtcgtccgcgccgccgtcttcgtcggcctccaccaccaccaccgccgccgccgccttcacctccacctccaccaccggcgccagcgccactaccgtcgactcctccaaggagtcgtggggccccgcgacgtacgccgccaccaacacgcacacgctgtacgaggtcgaggacgaggtgaggcggcagaggaggaaggacatgaggaggaggaggaggaggagggcggcggcgtgggacgaggaggaggaggaggaaggagcagcggcggtggcggtggcggtggaggtggagtcggcggcgccgtacgaggatttccgggagtcgatggtggcgatggtggtggagaaggagatcctcgtgatggcactgcccacagtggatgacgcatcgagcccactggtggcgatggccgatggcgcaggtggggctagagagagtagaagccaaaggccgtggaccatgggggccaaaagattcttttatggaagtggtgccgtccgttctaaaatgaacaagaagctctcaaagactcaaaactatttaagggagacggacaagggcagcacagctgccacacggcggaccgcagctctggttggagcagacaagcacaagcagctgcccccatccacgtga
More
|
||||||||||
| Protein seq | MAPLMSGSGGGGSARRRPLRQPPVVDDDDVGCSCPKQRLLRSLLSSLVSRARGALGGRAVSRPKSSAPPSSSASTTTTAAAAFTSTSTTGASATTVDSSKESWGPATYAATNTHTLYEVEDEVRRQRRKDMRRRRRRRAAAWDEEEEEEGAAAVAVAVEVESAAPYEDFRESMVAMVVEKEILVMALPTVDDASSPLVAMADGAGGARESRSQRPWTMGAKRFFYGSGAVRSKMNKKLSKTQNYLRETDKGSTAATRRTAALVGADKHKQLPPST |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0018560 | OsCMeo_05g0018560.01 | Chr05 | 22119454 | 22127352 | + | NAM | ||
| CDS seq | atggcgccattgatgtcagggagtggtggtggtggttctgctcggcgccgcccgctgcggcagccgccggtggtggacgacgacgacgtcggctgcagctgccccaagcagaggctgctccgctcgctcctctcctcgctggtgtcccgcgcgcgcggcgcactaggcggcagggcggtgtcgaggcccaagtcgtccgcgccgccgtcttcgtcggcctccaccaccaccaccgccgccgccgccttcacctccacctccaccaccggcgccagcgccactaccgtcgactcctccaaggagtcgtggggccccgcgacgtacgccgccaccaacacgcacacgctgtacgaggtcgaggacgaggtgaggcggcagaggaggaaggacatgaggaggaggaggaggaggagggcggcggcgtgggacgaggaggaggaggaggaaggagcagcggcggtggcggtggcggtggaggtggagtcggcggcgccgtacgaggatttccgggagtcgatggtggcgatggtggtggagaaggagatcctcgtgatggcactgcccacagtggatgacgcatcgagcccactggtggcgatggccgatggcgcaggtggggctagagagagtagaagccaaaggccgtggaccatgggggccaaaagattcttttatggaagtggtgccgtccgttctaaaatgaacaagaagctctcaaagactcaaaactatttaagggagacggacaagggcagcacagctgccacacggcggaccgcagctctggttggagcagacaagcacaagcagctgcccccatccacgtga
More
|
|||||||
| Protein seq | MAPLMSGSGGGGSARRRPLRQPPVVDDDDVGCSCPKQRLLRSLLSSLVSRARGALGGRAVSRPKSSAPPSSSASTTTTAAAAFTSTSTTGASATTVDSSKESWGPATYAATNTHTLYEVEDEVRRQRRKDMRRRRRRRAAAWDEEEEEEGAAAVAVAVEVESAAPYEDFRESMVAMVVEKEILVMALPTVDDASSPLVAMADGAGGARESRSQRPWTMGAKRFFYGSGAVRSKMNKKLSKTQNYLRETDKGSTAATRRTAALVGADKHKQLPPST
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0440900 | RBH | 0.0 | 0.675777 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g36970 | RBH | 0.0 | 0.287860 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0440900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0018750 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0018690 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0041200 | SBH | 0.0 | 0.0 | 0.470241 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0018580 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0018800 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0332800 | RBH | 0.7122525 | 0.084359 | 0.9212035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0018320 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0018620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0018560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0018680 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0018750 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0018750 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G018250 | RBH | 0.0 | 0.0 | 0.135386 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0018560 | RBH | 0.0 | 0.0 | 0.0 |
