Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_05g0007010 | OGI:05018080 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr05:6632242-6636210 | ||||||||
| Gene Symbol | BIN2, GSK2, Os GSK2, OsGSK2, Os BIN2, OsBIN2, BIN2/GSK2, OsSK22/OsGSK7, OsSK22, OsGSK7, SK22, GSK7, OsSK22/GSK2 | ||||||||||
| DNA seq | gagagaaaaaaaattcaaatatgtccttccgtgtagcacggtacatgtacagtgtacactgtccacggctttaaggtaaacagtcaaggatggaaggaacaaggttacaaggagagttattcatcagaggcatggtggcatttacatcatggaatgtgaacaaaacagtggcagtttacaggttacaactacgcctacattagggaactatattcttctgttacaattgggcaaaaaaaatgaaagaaaactcagtcatggatctaaacatttcggtttcctccgtcataccagctgatcccggtttcactaccaaactcgcgatgcaaaaacttctcgatttacaatgttgttcttcttcgatgattgaattgaacttccaacgaagcatttgcatatcatcatctgaggaatcatattttctattcttcttgttttgcggggattcgaagaatcatctgactcagccttcatgtgaacttcaccggttccgcgaaaacgatccaacaaaaggtctggtggtgtgcatttagcatttttagctcccagtattgaagaagttgtgggtagcttgccgtcgaacatgttctggtatgagcctgctgatgagctcttgagaagaatttgctagctgtagagaccaaaaggcagcaccaatgagcaccaaggagagtacacattttctcatggataccaagatctgaagttgtgtagcagattatgtttcatctgattcacttacttcgtgtttgaagttgaatagtggtggaaatggacgtccgtttggcaagcgtgcattcggctctcgcagctcatcaaagaaaggatgtgcacatgcatcaagctgcataaagatattcaaatgaataagcacatcggaaaaaaaatcaatattaagttgtcatctggctattgcaattacactgaataacgactaaacatgagacaactatcattcatccaccccaacattgatttggtaatggaccactaaagatcataaccataatggccatgccccactaaaaccaaagttagtgaagactagcattcttcaatctactttaggaaaaaagaaaaaagagaaagaaacaaggagtgtttctccactccaccccatttcaggagttgcacaaatcaaagagcacttggagggcaaagtgattaagaaaattccttggttacgctcaaatttgtgcaactcttaaagggtgaaaagtaacagctcatatgaccagctacagtaggcaaacttgcataacagcaataagaaaaggggcgttttacagtacccctgctgtgagcagtagtgaaaaatcacttttctactgttctgctacttaaaattgcagcaagaatatactcacagcagtgcagcggagactcggtgaatattgaagaaggcgtgaagcgaggtctattgcttcaggaggcatcctcttgtggaaaacctacgcagaagttagaaaaatcagtacctgtatgcacctccttatttatacattgcattgtaaagctatctggtgtccagaatctattattggaaatgagcccagctacattttcatagttgtccaggaaactataaaagatgacgtgatatatgactcaacatggataagattgtatgcttaccttgtgccaagggtgagcttttatctgtggaaacctaaactctgtatagttcgggttcatgcaacgtatttcctcacgggttggtgtaccaagaacctgcaagaatatcatacaaggttagagaagatgcccatactcaatagtaggagcaaaattagaactgcatggcatgtcttgcagtaccttaattatctctacaagctgatcgactgcactctcccctggaaacaatggctagcaaaaacaaatacaagataatcaaaatcacagcaacagtgatgacatcatgcttaaataactaaaccaaaagtttgcagatctgtcaaccatagaaaaaagaaaccaacctgaccaaggagtagctctgcaagaacacacccagctgaccatatatctattgatgtagtatattcagttgcaccaaatatgagctccggtgctcggtagtagcgtgagcatatatatgatatattgggttcacctgggacctgatggaatagtaaattaatggatattaggacagtaagatcaaaattatcaaaagtacaattgtagcaaacatctggaataaggtggaaaaaggtgtaaaactaaggaatttccatgaaacttccatcaagcataataaaaaggaagaaaaaaaggggtaagattcaccaagtatataagagttctttgaacgattcagtaacacagggctagctccaacttaacaaatggtaagattcaaaactgactagtctacagcaagaatcgtctaaagtccaattaaaaaaaagaaagtctaaagtaatgtgtgcgtattacaaaactttagggtggaaaaggccaataccagtgtttttgcgctcccaaagtcacagagcttgacttgatgagttagaggatccacctgtattgcaagaaaggagttcagagccaataatcaaaggccatcgcatagcaaaataataatctgatcatgaatacctaccaaaacattttgtggcttcacatccctatgacagacccctggaacagtatgaatgtacgcaagccccctaaataactgcagccaatgtagaatagacttagaagagacacacaggaaggcaggcatttcaaaatttatgattgattagcaatccacacacctgatacatgtaaagcttgacgtagataagtggcatccggtggttggcattgctgtagtgcttaagcacacggtagagtgtttctggaacatattccatgacaagattgaggaacagctcatccctacttgtggttgagaagaagcaatgcttcagggagatgacattggggtggtccatggcgcgcataagctgaagctcacggttcttgtaccgtcggtcctgcaataccttcttaatggcaacagtctctcctgtctccaagcatttagcctacacatgaaaccagcaagctaaacatcagaccaacaagtcgacagcacgaaaagaaagaaacaaataacaactttctgaaagatgaatcacctgaaagacgataccgaaagaaccagtgcccacaacgcgctccgccatgtagctaattgtctgaaaatcaagtacaaaattaccatcttaagaccaaaatttaattatgagcactagtgttcacaacaatgtaatccaacacacccaactttttcccctacaaaccaccaaaaatgagcaccaaacaagccatatttagttatttacaacagatcttgcagtaatacaagaacatgaacaactaacactaaataaattggctgatatctaccaacagtttacttcttttgcaaaatctgaccactaatccacatgcctctcttagagccaatggctttcccatcaccaaaaatcactacacggagctaagaaactagctgcagaacacacaagaacaccttcctaaaccaagaaccggcagcatttcactgcaactcaagaaatggaaccaagaccaaaacaacaaagggggggggggggaaggctcgtgtctcaccctcttgggctcgccgttcttgcccccgatggtggtggagatgatgtgcccggtcaccgcgtcattcccctccgcgtacggcgcctccccctcctgctgcttctgctccaccaagaacagcacactaaatcagcacacagcaaagaaccgcaaaaccacggatcagcacgccaagatccggttagtcacataccttgtcgcaggcgacggcggcgggcggctgcgcgtcgagcagcatcggctccggcgccggcgccggctggtccatgtggcaaagctggaagctgcaggtgcgtgaatggcactgcacaaagcttaggtgtgccaccacctggtcct
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| CDS seq | atggaccagccggcgccggcgccggagccgatgctgctcgacgcgcagccgcccgccgccgtcgcctgcgacaagacaattagctacatggcggagcgcgttgtgggcactggttctttcggtatcgtctttcaggctaaatgcttggagacaggagagactgttgccattaagaaggtattgcaggaccgacggtacaagaaccgtgagcttcagcttatgcgcgccatggaccaccccaatgtcatctccctgaagcattgcttcttctcaaccacaagtagggatgagctgttcctcaatcttgtcatggaatatgttccagaaacactctaccgtgtgcttaagcactacagcaatgccaaccaccggatgccacttatctacgtcaagctttacatgtatcagttatttagggggcttgcgtacattcatactgttccaggggtctgtcatagggatgtgaagccacaaaatgttttggtggatcctctaactcatcaagtcaagctctgtgactttgggagcgcaaaaacactggtcccaggtgaacccaatatatcatatatatgctcacgctactaccgagcaccggagctcatatttggtgcaactgaatatactacatcaatagatatatggtcagctgggtgtgttcttgcagagctactccttggtcagccattgtttccaggggagagtgcagtcgatcagcttgtagagataattaaggttcttggtacaccaacccgtgaggaaatacgttgcatgaacccgaactatacagagtttaggtttccacagataaaagctcacccttggcacaaggttttccacaagaggatgcctcctgaagcaatagacctcgcttcacgccttcttcaatattcaccgagtctccgctgcactgctcttgatgcatgtgcacatcctttctttgatgagctgcgagagccgaatgcacgcttgccaaacggacgtccatttccaccactattcaacttcaaacacgaactagcaaattcttctcaagagctcatcagcaggctcataccagaacatgttcgacggcaagctacccacaacttcttcaatactgggagctaa
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| Protein seq | MDQPAPAPEPMLLDAQPPAAVACDKTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRAMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYSNANHRMPLIYVKLYMYQLFRGLAYIHTVPGVCHRDVKPQNVLVDPLTHQVKLCDFGSAKTLVPGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTEFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALDACAHPFFDELREPNARLPNGRPFPPLFNFKHELANSSQELISRLIPEHVRRQATHNFFNTGS |
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| Function | Shaggy-related protein kinase GSK2 [UniProtKB/Swiss-Prot:Q60EZ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0007010 | OsCMeo_05g0007010.01 | Chr05 | 6632242 | 6636139 | - | NAM | ||
| CDS seq | atggaccagccggcgccggcgccggagccgatgctgctcgacgcgcagccgcccgccgccgtcgcctgcgacaagacaattagctacatggcggagcgcgttgtgggcactggttctttcggtatcgtctttcaggctaaatgcttggagacaggagagactgttgccattaagaaggtattgcaggaccgacggtacaagaaccgtgagcttcagcttatgcgcgccatggaccaccccaatgtcatctccctgaagcattgcttcttctcaaccacaagtagggatgagctgttcctcaatcttgtcatggaatatgttccagaaacactctaccgtgtgcttaagcactacagcaatgccaaccaccggatgccacttatctacgtcaagctttacatgtatcagttatttagggggcttgcgtacattcatactgttccaggggtctgtcatagggatgtgaagccacaaaatgttttggtggatcctctaactcatcaagtcaagctctgtgactttgggagcgcaaaaacactggtcccaggtgaacccaatatatcatatatatgctcacgctactaccgagcaccggagctcatatttggtgcaactgaatatactacatcaatagatatatggtcagctgggtgtgttcttgcagagctactccttggtcagccattgtttccaggggagagtgcagtcgatcagcttgtagagataattaaggttcttggtacaccaacccgtgaggaaatacgttgcatgaacccgaactatacagagtttaggtttccacagataaaagctcacccttggcacaaggttttccacaagaggatgcctcctgaagcaatagacctcgcttcacgccttcttcaatattcaccgagtctccgctgcactgctcttgatgcatgtgcacatcctttctttgatgagctgcgagagccgaatgcacgcttgccaaacggacgtccatttccaccactattcaacttcaaacacgaactagcaaattcttctcaagagctcatcagcaggctcataccagaacatgttcgacggcaagctacccacaacttcttcaatactgggagctaa
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| Protein seq | MDQPAPAPEPMLLDAQPPAAVACDKTISYMAERVVGTGSFGIVFQAKCLETGETVAIKKVLQDRRYKNRELQLMRAMDHPNVISLKHCFFSTTSRDELFLNLVMEYVPETLYRVLKHYSNANHRMPLIYVKLYMYQLFRGLAYIHTVPGVCHRDVKPQNVLVDPLTHQVKLCDFGSAKTLVPGEPNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGESAVDQLVEIIKVLGTPTREEIRCMNPNYTEFRFPQIKAHPWHKVFHKRMPPEAIDLASRLLQYSPSLRCTALDACAHPFFDELREPNARLPNGRPFPPLFNFKHELANSSQELISRLIPEHVRRQATHNFFNTGS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_05g0007010 | OsCMeo_05g0007010.02 | Chr05 | 6632360 | 6636210 | - | IsoSeq | ||
| CDS seq | atgttcgacggcaagctacccacaacttcttcaatactgggagctaaaaatgctaaatgcacaccaccagaccttttgttggatcgttttcgcggaaccggtgaagttcacatgaaggctgagtcagatgattcttcgaatccccgcaaaacaagaagaatagaaaatatgattcctcagatgatgatatgcaaatgcttcgttggaagttcaattcaatcatcgaagaagaacaacattgtaaatcgagaagtttttgcatcgcgagtt
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| Protein seq | MFDGKLPTTSSILGAKNAKCTPPDLLLDRFRGTGEVHMKAESDDSSNPRKTRRIENMIPQMMICKCFVGSSIQSSKKNNIVNREVFASRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr05 | 6635435 | 6636065 | - | OsCMeo_05g0007010.02 | OsCMeo_05g0007010.02,OsCMeo_05g0007010.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.934521 | 34.472248 | 5.304317 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0207500 | RBH | 0.131049 | 0.398286 | 3.035415 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11730 | RBH | 0.088622 | 0.267881 | 0.781375 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0207500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007070 | RBH | 0.880233 | 29.788969 | 5.836488 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007120 | RBH | 0.276370 | 3.722287 | 1.243664 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007760 | RBH | 1.187239 | 20.247692 | 12.493056 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007060 | RBH | 0.062961 | 1.129494 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007160 | RBH | 1.544537 | 27.619064 | 5.764184 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0099900 | RBH | 2.6524175 | 15.3969835 | 4.198856 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007010 | RBH | 0.023450 | 2.639258 | 1.005374 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0098900 | RBH | 3.8478525 | 9.308522 | 9.429585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007060 | RBH | 0.000000 | 0.555112 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0006990 | RBH | 0.105434 | 42.730434 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007070 | RBH | 2.830918 | 30.796612 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007160 | RBH | 0.590765 | 4.110536 | 0.676679 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007110 | RBH | 0.344384 | 15.982967 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G006880 | RBH | 0.381417 | 13.912321 | 4.080397 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007130 | RBH | 0.612655 | 25.456718 | 4.324202 |
