Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsCMeo_05g0003050		OGI:05007230 \| 16/16			CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)			Chr05:2524239-2530320		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		OsMPK14, MPK14
DNA seq		gaggagagagagaggagatccacatctctgatggttcttgggatctcctaggagttgtttctacctgtgctgctgctgctgatttcttcttcgatttgctagcggctgtgtggtcggagctcgtcttcttggttcgagatctcggtgagttgaagctgtgtgttttatttttggctgatccatcttgttcttgctgtggctgtttatttttagttggatccattcaatttggagttgatgtgctttttttttttgggttttcaaattaagggggtcagaaaaatcggtattgttgttttacagattcgtgagcgcgagtgctttttccaacaaaTtttttttagtgtttttgagtttattggtttgagtatttttgagtatattggcagttctcttgtctcttcgaggaatgaagtttgctgcgaatgggataatgttcattgactatgtgctgtgaactttccttggcgactgttaattgacctcaagttattgtcttgtatgttcatatttttatctgatttatgcagtacataaatttgcatcttgttatcctggacttggagatatgcgtacgtatggcccccatccatacacatcgttgaatcatgcggttctgacccctaagcagtttttgaaataaaaaagaatatcacttgatgttatttatccccataaaaaaagtaacgcttgctgttttgcatcatacatgattgacatggtatgttgtttccgatgaaaccgctttcatacagtatgatttagctaatgcctttaggatggttgacctaattgaacaaaggattttttttctcatactaaaaaaattcttttgtcatactaaaagaactagtctgattctgatccattttgtctttttatgattcagacaccttctgagatggattttttcaccgagtacggtgagggaaacaggtacaagatagaagaggttataggaaaagggagttatggtgtggtttgctctgctttggacactcacaccggtgataaagttgctatcaagaaaatcaatgacatctttgagcatgtgtccgatgcaacacggatacttcgcgagatcaagttgcttagactcctgcgacatccggatatcgtggaaattaagcatattctacttcctccatcaaggagagaattcaaggatatctacgttgtttttgaactcatggagtctgatttgcaccaagttataaaggccaacgatgacttgactcctgaacactaccagtttttcttgtatcagttgctccgaggactgaaatatatacacacaggtaattgatttattttcacatgaaagatggttcttttgcatttctttcagtagcctgctgtgaagaatgttctatttaaataaataaatttgctaaggacaattgccaccatgttataactgttgccagataacaaccaaactatttttctactagcagattattctgggattgttccttcagcatttgtgcttttttgggaacctacagtttatctgcacaaactatataatgaaaacaatcttatggaactgtggttgctttagtacaaataaaccagcagtaccccaaaattctcctgaaatgtggatcattcttgtgggatgactagatgccccctggcgccctttgatgtagagtttataaaatctgaagtgttagcaagcttccatagcgggcatcaacagaatcttgttgtcttcctttgcttcccaagttgtggatacactgaatttgtgccaggatggtacagcctgaggcattgggtagtttaaccatccaaaaaattattcatggcatcctgaaagtataatgcatgtaactgcaacctcatcttctatctgtacatgctattgaccatggttcttaccttctggcaatacaatataacaaatacttttcctagggaagaggctatgcttgctgccctttgtgaaaagtcgaacaactagctaacatcttccaattgaactggatttgttatctgatacacatctgccatggtgcaaaccgaggtttgggctgtaataaacaaggaatttcatattctctggtttcttcatcttcttaccctggttgtttgttggctttggtcagacaacttagtttgttttcaaaagcagaagaacaaaggcaagcacaagtgtttacatatatttgacacattccagcattcgttgttcctgatagacatacccttcacatgaagcacccttttgtgactaagttagttctgttctttaggtttttttattaacctgattgtgattgaataggatttccctattcattttataccatgatagaaacatctatcttgctttgcttctaatgatgctgtaaataatgcatgtgctcatcccccatcccctctttttttctaaattattctaagaagtcagtttgaccaatttagtacttttgttatatgaaaggctgaaaaatacaaacgcaccattcaggaaaggaataataagacgaggactactaacagattaatcttttttctgtactcagtgttctatgtttgtgtgattcctatttatcagtccatcctatttgtgactctaattcctgactgatgcatcttttgatagctttttgcagcaaatgtatttcatcgagatctcaaaccaaaaaatatcttggcgaatgctgattgtaagctcaaaatatgtgatttcggccttgcaagggtagcttttagtgatactccaaccgccatcttctggacggtacgtcatttcacgcccactacacactatgcagctcattactcttaagatttatatcatcagctaattgatttttctgtttttaggattatattgcaacaaggtggtaccgagcaccagagctgtgtggatcttttttctccaaggttgtaatcacatctttaattttatattggatcatgatattctgcaaaaagaaatacattgttgttctttttacctttattaacctggggcagcgaagcaaacgtggataacatttctttaggatttttatccaaacatactgtaaagtattttttttatctgaagggcagcttctaccagttagacaacatgccttcttgcttaggaattattgacagatgaatggaatgtttttattggttagtaatgttttcttatgcatttgatagctagtgtttcattgccatttatgcctctttatgttacttttcatgcctaattttgctactatgttcctggcaacttccattttgattatgctatttttgaattttgtgaaccaactaattaatgtcacataaagtcatatgtaattgtagttcatgccacttgtgtctagtattattgatgcctgcaaataatttgacatattttacaacctgaactagtgaactacacaaagagcctccccgccttatgtcctgaccatataaccgtttaaaataccttttccttcacgaatggtccaaattgggttacctagtttttatacaatgatcatatgataggttgggtttcatatgcgtatcatgattttttttttttaaaaaaactgatttaacatctagacattgccaagcaaataaaactgtttttgtttttatgacttgtcttctttcatacaaggaatgctgtgtacacatgtattctcgctggggaatttttttttcgccgggaagtgtacacatgtattctccttttattttttgcatgggcttctatgtttgtccaatatccgaagcaccgatgaacataatgtgtttcattattttgcagtatacaccagcaatagatatatggagtattggctgcatatttgccgagcttttaaccggaaaacctcttttccctgggaagaatgtggttcatcaacttgatataattacagatctactaggaacaccttctccagaaacaatatctagggtcagtatggattgacttcaaaaaattgcttattacttagttccaataaaatcctataatgcttatatctacattcacttatgcaacagattagaaatgagaaggcaagacgttacttgaacagtatgaggcggaaaaaacctataccatttacacagaagttcccaaatgcagatccacttgcaatgcggttgttagagagaatgttagcttttgatccaaaagatcggccaagtgctgaggaggtattgtcagtattagcatcaaccttgcatcTttttttttttttggtgtgttatctcaagtgtcagcagctaatgtagcagccacattttcaggcgcttgctgatccttatttcaagaacatagccaatgttgatagagagccttctgctcaacctatcacaaagctagagtttgagttcgagaggcggagaattactaaggaagatataagggaactcatatatagagaaattctggagtatcatccaaagatgctgagggagttccttgagggaactgagtccactggtttcatgtacccaaggtgtgtagtcatgccaagtttatttttattccattgctttaaaatcttcaactgagttgttcctattataatttctgagacaatttagtgatcttattgttgaactgccaggccagttgtatgttgttgaacatgctatatgtccaggttaacaattaaataacaaatatttatgcgaattgactgttttgttgatgcaccgtattaagtagtgattacttattttaattgctctatttgttgctcgaaatcgattaggcacgacaaaaacttgagataattcaaagaactaagatcaattactctattatgtttacagtgcagtagaccattttaaaaaacagtttgcataccttgaagaacattatgccaagggatcaacagcagctccacctgagagacaacataactcattaccaaggtaagatatttattttattttattttatatgacatggattaaccgatggaacttgtagctccagttgaatatatacttgattcttgactatctactattgtatcgacaggccttgtgttgtctattcagataaccggccacaaagcacagccagtgtcactgaggatctttccaggtgtttaatcagagacaacaatctaaaatcacaggattctgcttcagtcggtgcaagcagaatccctcaaggttagcatctgtccttaccagttgactttaacctgcaattaaacttgtatcctccattatatctttcatacattgtgtgactcaagatagattttgcacgttacctatcttccaggtgctgctgcaagacctggtaaagcagttggttcggtgctgcgttacggtaactgttcgacatccgctgctgagcaacaatatgagcagcgaagggttgttcggaacccagcaattgctccaaacagcagtgttcctctggggagctcataccccagaagaaaccagacctgcaagagtgaaacaggtgatgttgaaaggatcgattccagccaaaccggtccaccgaagccatatgtggcgaacaaactgcctgctaccgtcgatggtcggagtggccactggtaaatttctgcagcgcaccagcgaaaacgctagttattaccacagcatcagcatgggtttattgttctatgtagtaaattcttagacatttaaaacatgtcattctgtacagacttgtattgtttcttgggggcttttccatgataaaaacagtagaattgtactgcaagccctagtggattaggctgcctgtttcttcatttcttcatagctcaacctctgaatgatctggtacacaaacaagatctcatggaattggacatcacatgattcagttcgaagggggtacagtggaaactggaagcaacaagtggactgtaacattttcttgctgagaaaacaagggactctttactgacctgactgatgctgctattcaatttattttccaagtaaatccgaagaaggatcatgtaaacagcacaatgttggacattgctttagtatttcgttctcaggaacattgttccctttgcagagctaggagctgcaactatgtactactatctgacattgctgtaacttgtaaaacttaattgca More
CDS seq		atggagtctgatttgcaccaagttataaaggccaacgatgacttgactcctgaacactaccagtttttcttgtatcagttgctccgaggactgaaatatatacacacagcaaatgtatttcatcgagatctcaaaccaaaaaatatcttggcgaatgctgattgtaagctcaaaatatgtgatttcggccttgcaagggtagcttttagtgatactccaaccgccatcttctggacggattatattgcaacaaggtggtaccgagcaccagagctgtgtggatcttttttctccaagtatacaccagcaatagatatatggagtattggctgcatatttgccgagcttttaaccggaaaacctcttttccctgggaagaatgtggttcatcaacttgatataattacagatctactaggaacaccttctccagaaacaatatctaggattagaaatgagaaggcaagacgttacttgaacagtatgaggcggaaaaaacctataccatttacacagaagttcccaaatgcagatccacttgcaatgcggttgttagagagaatgttagcttttgatccaaaagatcggccaagtgctgaggaggcgcttgctgatccttatttcaagaacatagccaatgttgatagagagccttctgctcaacctatcacaaagctagagtttgagttcgagaggcggagaattactaaggaagatataagggaactcatatatagagaaattctggagtatcatccaaagatgctgagggagttccttgagggaactgagtccactggtttcatgtacccaagtgcagtagaccattttaaaaaacagtttgcataccttgaagaacattatgccaagggatcaacagcagctccacctgagagacaacataactcattaccaaggccttgtgttgtctattcagataaccggccacaaagcacagccagtgtcactgaggatctttccaggtgtttaatcagagacaacaatctaaaatcacaggattctgcttcagtcggtgcaagcagaatccctcaaggtgctgctgcaagacctggtaaagcagttggttcggtgctgcgttacggtaactgttcgacatccgctgctgagcaacaatatgagcagcgaagggttgttcggaacccagcaattgctccaaacagcagtgttcctctggggagctcataccccagaagaaaccagacctgcaagagtgaaacaggtgatgttgaaaggatcgattccagccaaaccggtccaccgaagccatatgtggcgaacaaactgcctgctaccgtcgatggtcggagtggccactggtaa More
Protein seq		MESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYIATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSPETISRIRNEKARRYLNSMRRKKPIPFTQKFPNADPLAMRLLERMLAFDPKDRPSAEEALADPYFKNIANVDREPSAQPITKLEFEFERRRITKEDIRELIYREILEYHPKMLREFLEGTESTGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPPERQHNSLPRPCVVYSDNRPQSTASVTEDLSRCLIRDNNLKSQDSASVGASRIPQGAAARPGKAVGSVLRYGNCSTSAAEQQYEQRRVVRNPAIAPNSSVPLGSSYPRRNQTCKSETGDVERIDSSQTGPPKPYVANKLPATVDGRSGHW
Function		Mitogen-activated protein kinase 14 [UniProtKB/Swiss-Prot:Q75KK8]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_05g0003050	OsCMeo_05g0003050.01	Chr05	2525163	2530320	+	NAM
CDS seq	atggagtctgatttgcaccaagttataaaggccaacgatgacttgactcctgaacactaccagtttttcttgtatcagttgctccgaggactgaaatatatacacacagcaaatgtatttcatcgagatctcaaaccaaaaaatatcttggcgaatgctgattgtaagctcaaaatatgtgatttcggccttgcaagggtagcttttagtgatactccaaccgccatcttctggacggattatattgcaacaaggtggtaccgagcaccagagctgtgtggatcttttttctccaagtatacaccagcaatagatatatggagtattggctgcatatttgccgagcttttaaccggaaaacctcttttccctgggaagaatgtggttcatcaacttgatataattacagatctactaggaacaccttctccagaaacaatatctaggattagaaatgagaaggcaagacgttacttgaacagtatgaggcggaaaaaacctataccatttacacagaagttcccaaatgcagatccacttgcaatgcggttgttagagagaatgttagcttttgatccaaaagatcggccaagtgctgaggaggcgcttgctgatccttatttcaagaacatagccaatgttgatagagagccttctgctcaacctatcacaaagctagagtttgagttcgagaggcggagaattactaaggaagatataagggaactcatatatagagaaattctggagtatcatccaaagatgctgagggagttccttgagggaactgagtccactggtttcatgtacccaagtgcagtagaccattttaaaaaacagtttgcataccttgaagaacattatgccaagggatcaacagcagctccacctgagagacaacataactcattaccaaggccttgtgttgtctattcagataaccggccacaaagcacagccagtgtcactgaggatctttccaggtgtttaatcagagacaacaatctaaaatcacaggattctgcttcagtcggtgcaagcagaatccctcaaggtgctgctgcaagacctggtaaagcagttggttcggtgctgcgttacggtaactgttcgacatccgctgctgagcaacaatatgagcagcgaagggttgttcggaacccagcaattgctccaaacagcagtgttcctctggggagctcataccccagaagaaaccagacctgcaagagtgaaacaggtgatgttgaaaggatcgattccagccaaaccggtccaccgaagccatatgtggcgaacaaactgcctgctaccgtcgatggtcggagtggccactggtaa More
Protein seq	MESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFSDTPTAIFWTDYIATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIITDLLGTPSPETISRIRNEKARRYLNSMRRKKPIPFTQKFPNADPLAMRLLERMLAFDPKDRPSAEEALADPYFKNIANVDREPSAQPITKLEFEFERRRITKEDIRELIYREILEYHPKMLREFLEGTESTGFMYPSAVDHFKKQFAYLEEHYAKGSTAAPPERQHNSLPRPCVVYSDNRPQSTASVTEDLSRCLIRDNNLKSQDSASVGASRIPQGAAARPGKAVGSVLRYGNCSTSAAEQQYEQRRVVRNPAIAPNSSVPLGSSYPRRNQTCKSETGDVERIDSSQTGPPKPYVANKLPATVDGRSGHW More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsCMeo_05g0003050	OsCMeo_05g0003050.02	Chr05	2524239	2530115	+	IsoSeq
CDS seq	atgagcagcgaagggttgttcggaacccagcaattgctccaaacagcagtgttcctctggggagctcataccccagaagaaaccagacctgcaagagtgaaacaggtgatgttgaaaggatcgattccagccaaaccggtccaccgaagccatatgtggcgaacaaactgcctgctaccgtcgatggtcggagtggccactggtaaatttctgcagcgcaccagcgaaaacgctagttattaccacagcatcagcatgggtttattgttctatgtagtaaat More
Protein seq	MSSEGLFGTQQLLQTAVFLWGAHTPEETRPARVKQVMLKGSIPAKPVHRSHMWRTNCLLPSMVGVATGKFLQRTSENASYYHSISMGLLFYVVN

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	2.167236	29.919899	26.432373

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_05g0143500	RBH	4.490775	4.772355	9.825994
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os05g05160	RBH	3.238282	2.905141	3.026122
Nipponbare \| IRGSP 1.0 \| RAP-db	Os05g0143500	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_05g0003060	RBH	1.379538	31.129753	15.817467
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_05g0003090	RBH	1.574297	15.000608	7.711696
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_11g0010130	RBH	0.0	7.677572	2.746539
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_05g0003110	RBH	0.656587	1.519238	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_05g0003160	RBH	50.636978	73.665237	47.883598
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_05G0036500	RBH	22.0041105	35.976631	22.3984585
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_05g0002930	RBH	1.008913	4.500335	4.870674
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_05G0037600	RBH	45.338575	28.116134	41.4746
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_05g0003060	RBH	1.386509	0.540147	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_05g0002970	RBH	3.628253	39.558372	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_05g0003080	RBH	23.239408	78.522644	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_05g0003110	RBH	3.513056	2.773208	7.383440
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_05g0003150	RBH	1.300460	19.651146	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_05G002990	RBH	1.291351	15.269213	7.926507
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_05g0003160	RBH	3.016290	46.523941	19.091948

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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