Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0032380 | OGI:04103290 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:35254728-35257438 | ||||||||
| Gene Symbol | ARF13, OsARF13, OsARF12 | ||||||||||
| DNA seq | aattgcaagtaaatgcatgaatatcaataagaaagtacttttacaactatacatatagtataattgagtatatatggcattgagaactagagaccgattagtaagtgcatttctgaatttttttttccattaattgcaagtaaatgcatgaatatcaataagaaagtactagtacatcttggaaacgtttaatgggatattccttcaaagcctagcaccatcttgattgtggccattggtaagagagtcaggtaggcttgtgtcagaagcttcttcggtagcagtttcatcatctacaccctctggaacctgattcacttgtgctgaagcgaaagcgccattggtgtctccttgcacaggtgatgttattgtgacgccaaacagctgtatggtcttcattccgtcagatgcagaaagaggcgtgtttacggggttgtcgggcggtgatccattttgaggagtgacaatgtcggtgtggggaactaaaatctgaagatcccttgggaacagctgctgagtcctcaccattgatggtgttgatgaagagggtatatctgcataggcatggccattgttatgcctggctccctgaatgtcagcgggaggttgaggttgcgggtgcattagtatcggtggcaccagcagtgaatccccattgcacacaggtgcactaatattgttgttagaaatctttagccccatgggaagaggagggaaatcaacaggctggacctgccaaggattaacaaatctgtttttcatggaagatgacgcggcggaggcatcccattcaacctgcacacaagcaccgatcgagcagtaatgtcagatcggctatatatgcgatgcgcaatgcaatatgtaactgtagagatacaagcagaaattgaagatgatcagctgcgatagccacgaacaagagcaaagcaatatccattataagaagataacaattaagcttgctgaaatgaacactcatctacaaaaacatggtgtaaggacggggacaaaggtgacgaggcataagcatcactatcatcaaacataactactgccccgtcatgtaaaaaacaaatctagtaccggatgtgatacgttctaatactataaatctggatatatctctattcagattcagtgtactaaaatgtgttacatacagtactaatttgcttttgttttttagaacggaaggagtacatacatacttcttgcgtcttaaaatataagcatttttagcatagtgataagtcaaaatgtttttctttgaccattaatagcataaaaataaaaaagatcaatcatataaaatcgatattactagatttatcattaaccaaattatcataatatgcaactcattttatttaaaatattttacttttatagatattattgatcaaaatagcatatcggagactgtgtcaaaatttaaaagtgtttatactatgggatggagggagtaacatagagagtgacattgggcaatcatgagacgcatgcaatcctcgatcggggatggtgattatattaatattaacgagggacgggacgggacgatgaagaggtaggtacctcgagagtgcgccagatttgttggtggcggaggttagtgagggtgccattgagccaagcgaggcggcgggtgtcctcggcctccatcacctgggcgcgcacctgcatcccgcacctccacggagtagtcaatcccttatccacctccacccgcggcaccacgaactcccccgccccatgccgcgggtagtaggtcaccctgaacgccgcctgctccgccgccagtcggaccgcctccatcacctcctggggctgcacccgcccccgcgcgttgcacgccgactcgcccgagtacctggccgcgcgtcgcaccccgaccaacagcttcctctcgggggccggggccccgcaccacatgaacaccaccgtgtccccggccaccagctgcttggcgttcacgaacttgctccacccggtcgtcagcaggtgccggcgcggcgtgccgcggtagatgtggcggaattcccacgagtcgccctgcaggtcccccatggtgaggctctggacgggcgggtcatcatccaggttgagcgccgggaagatgtgatcggcgcacaaccttggcacggagaagccgccgccgttgttggcgtcgctctgcgtcagctgcttggcgtagtagcggaactcctgtgattctgcttctgctaattcggcggcggcgggggcgggggcgggggcgggggcgggggcgtcgtggcgaagagggaggagggagatggtggcgtagggctcgccggtggtggtgtcggcggagaggtcgacggcggtgatggtgcagaggaagaatcggtgggcggaggggagcggatccgggagaggggcgggacactgctcggcgtggccctctgggaagtaggagacctgggtgccgacgacggggatgcgggacagcggggcggcgcaggcgagccagacgaggcggtcgatcggtggcggtggcggtggcggcggcggcggaggaggaggcggagcggtggcggctggcgggcgcgccatcgtcgcacgcggcgcgcggaaagagagtggtgggggtttggttagggtttagggaggaagggaaggggactcgaatcgatcgcttaattatggacaccttccttctccgagaatttagtctcccccgtgcccaaatt
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| CDS seq | atggcgcgcccgccagccgccaccgctccgcctcctcctccgccgccgccgccaccgccaccgccaccgatcgaccgcctcgtctggctcgcctgcgccgccccgctgtcccgcatccccgtcgtcggcacccaggtctcctacttcccagagggccacgccgagcagtgtcccgcccctctcccggatccgctcccctccgcccaccgattcttcctctgcaccatcaccgccgtcgacctctccgccgacaccaccaccggcgagccctacgccaccatctccctcctccctcttcgccacgacgcccccgcccccgcccccgcccccgcccccgccgccgccgaattagcagaagcagaatcacaggagttccgctactacgccaagcagctgacgcagagcgacgccaacaacggcggcggcttctccgtgccaaggttgtgcgccgatcacatcttcccggcgctcaacctggatgatgacccgcccgtccagagcctcaccatgggggacctgcagggcgactcgtgggaattccgccacatctaccgcggcacgccgcgccggcacctgctgacgaccgggtggagcaagttcgtgaacgccaagcagctggtggccggggacacggtggtgttcatgtggtgcggggccccggcccccgagaggaagctgttggtcggggtgcgacgcgcggccaggtactcgggcgagtcggcgtgcaacgcgcgggggcgggtgcagccccaggaggtgatggaggcggtccgactggcggcggagcaggcggcgttcagggtgacctactacccgcggcatggggcgggggagttcgtggtgccgcgggtggaggtggataagggattgactactccgtggaggtgcgggatgcaggtgcgcgcccaggtgatggaggccgaggacacccgccgcctcgcttggctcaatggcaccctcactaacctccgccaccaacaaatctggcgcactctcgaggttgaatgggatgcctccgccgcgtcatcttccatgaaaaacagatttgttaatccttggcaggtccagcctgttgatttccctcctcttcccatggggctaaagatttctaacaacaatattagtgcacctgtgtgcaatggggattcactgctggtgccaccgatactaatgcacccgcaacctcaacctcccgctgacattcagggagccaggcataacaatggccatgcctatgcagatataccctcttcatcaacaccatcaatggtgaggactcagcagctgttcccaagggatcttcagattttagttccccacaccgacattgtcactcctcaaaatggatcaccgcccgacaaccccgtaaacacgcctctttctgcatctgacggaatgaagaccatacagctgtttggcgtcacaataacatcacctgtgcaaggagacaccaatggcgctttcgcttcagcacaagtgaatcaggttccagagggtgtagatgatgaaactgctaccgaagaagcttctgacacaagcctacctgactctcttaccaatggccacaatcaagatggtgctaggctttga
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| Protein seq | MARPPAATAPPPPPPPPPPPPPPIDRLVWLACAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPLPSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRYYAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAPAPERKLLVGVRRAARYSGESACNARGRVQPQEVMEAVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQVMEAEDTRRLAWLNGTLTNLRHQQIWRTLEVEWDASAASSSMKNRFVNPWQVQPVDFPPLPMGLKISNNNISAPVCNGDSLLVPPILMHPQPQPPADIQGARHNNGHAYADIPSSSTPSMVRTQQLFPRDLQILVPHTDIVTPQNGSPPDNPVNTPLSASDGMKTIQLFGVTITSPVQGDTNGAFASAQVNQVPEGVDDETATEEASDTSLPDSLTNGHNQDGARL |
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| Function | Auxin response factor 13 [UniProtKB/Swiss-Prot:Q7XSS9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0032380 | OsCMeo_04g0032380.01 | Chr04 | 35254728 | 35257438 | - | NAM | ||
| CDS seq | atggcgcgcccgccagccgccaccgctccgcctcctcctccgccgccgccgccaccgccaccgccaccgatcgaccgcctcgtctggctcgcctgcgccgccccgctgtcccgcatccccgtcgtcggcacccaggtctcctacttcccagagggccacgccgagcagtgtcccgcccctctcccggatccgctcccctccgcccaccgattcttcctctgcaccatcaccgccgtcgacctctccgccgacaccaccaccggcgagccctacgccaccatctccctcctccctcttcgccacgacgcccccgcccccgcccccgcccccgcccccgccgccgccgaattagcagaagcagaatcacaggagttccgctactacgccaagcagctgacgcagagcgacgccaacaacggcggcggcttctccgtgccaaggttgtgcgccgatcacatcttcccggcgctcaacctggatgatgacccgcccgtccagagcctcaccatgggggacctgcagggcgactcgtgggaattccgccacatctaccgcggcacgccgcgccggcacctgctgacgaccgggtggagcaagttcgtgaacgccaagcagctggtggccggggacacggtggtgttcatgtggtgcggggccccggcccccgagaggaagctgttggtcggggtgcgacgcgcggccaggtactcgggcgagtcggcgtgcaacgcgcgggggcgggtgcagccccaggaggtgatggaggcggtccgactggcggcggagcaggcggcgttcagggtgacctactacccgcggcatggggcgggggagttcgtggtgccgcgggtggaggtggataagggattgactactccgtggaggtgcgggatgcaggtgcgcgcccaggtgatggaggccgaggacacccgccgcctcgcttggctcaatggcaccctcactaacctccgccaccaacaaatctggcgcactctcgaggttgaatgggatgcctccgccgcgtcatcttccatgaaaaacagatttgttaatccttggcaggtccagcctgttgatttccctcctcttcccatggggctaaagatttctaacaacaatattagtgcacctgtgtgcaatggggattcactgctggtgccaccgatactaatgcacccgcaacctcaacctcccgctgacattcagggagccaggcataacaatggccatgcctatgcagatataccctcttcatcaacaccatcaatggtgaggactcagcagctgttcccaagggatcttcagattttagttccccacaccgacattgtcactcctcaaaatggatcaccgcccgacaaccccgtaaacacgcctctttctgcatctgacggaatgaagaccatacagctgtttggcgtcacaataacatcacctgtgcaaggagacaccaatggcgctttcgcttcagcacaagtgaatcaggttccagagggtgtagatgatgaaactgctaccgaagaagcttctgacacaagcctacctgactctcttaccaatggccacaatcaagatggtgctaggctttga
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| Protein seq | MARPPAATAPPPPPPPPPPPPPPIDRLVWLACAAPLSRIPVVGTQVSYFPEGHAEQCPAPLPDPLPSAHRFFLCTITAVDLSADTTTGEPYATISLLPLRHDAPAPAPAPAPAAAELAEAESQEFRYYAKQLTQSDANNGGGFSVPRLCADHIFPALNLDDDPPVQSLTMGDLQGDSWEFRHIYRGTPRRHLLTTGWSKFVNAKQLVAGDTVVFMWCGAPAPERKLLVGVRRAARYSGESACNARGRVQPQEVMEAVRLAAEQAAFRVTYYPRHGAGEFVVPRVEVDKGLTTPWRCGMQVRAQVMEAEDTRRLAWLNGTLTNLRHQQIWRTLEVEWDASAASSSMKNRFVNPWQVQPVDFPPLPMGLKISNNNISAPVCNGDSLLVPPILMHPQPQPPADIQGARHNNGHAYADIPSSSTPSMVRTQQLFPRDLQILVPHTDIVTPQNGSPPDNPVNTPLSASDGMKTIQLFGVTITSPVQGDTNGAFASAQVNQVPEGVDDETATEEASDTSLPDSLTNGHNQDGARL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.685756 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0690600 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g59430 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0690600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0032040 | RBH | 0.0 | 0.0 | 0.572339 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032810 | RBH | 0.0 | 0.0 | 0.165307 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0032240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032500 | RBH | 0.0 | 0.0 | 0.607782 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0557700 | RBH | 0.0732725 | 0.024884 | 0.087332 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0031110 | RBH | 0.0 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0563900 | RBH | 0.015494 | 0.34871 | 0.1846435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031580 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0031400 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031530 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0032110 | RBH | 0.0 | 0.0 | 0.262062 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0032060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031580 | RBH | 0.000000 | 0.0 | 0.367104 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0031320 | RBH | 0.000000 | 0.0 | 0.980369 |
