Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0031970 | OGI:04102620 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:34899816-34902005 | ||||||||
| Gene Symbol | OsUEV1D, UEV1D | ||||||||||
| DNA seq | acgcactccctccgcaagtggccgcacccacaaaatcgccctcctcctttttatccctcccgcccacgctctcacacccgccggcttctccttgtctctgctctccacacgcggagtggaggagggattaatcggaagcatatcaatcggcggccatgacgatcggcggcgcgtcctccagcgtcgtaggtacgcaacgcatgcgcccgaaccgatcattccttgcatatcttggatggatgctgggttttgattgattgattgatccatcatatcgcagtagtgccacgcaacttccggttgctggaggagctggagcgtggcgagaagggcatcggcgacggcaccgtcagctacggcatggacgacgacggcgacgacatcttcatgcgctcctggaccggcacaatcattggaccactcaacgtacgtacgctcgcaacccccccgctgtgtacatatatatttgcattgacatcctgctgcagattgatacttctcatcgatcgaccacgcatgtgctcactgctgcatttttcatcatctggttggttgcattttcatctgggttgttgattggttggttggttgcagtctgtgcacgaggggcgcatctaccagctgaagctcttctgcgacaaggactaccccgacaagccgcccaccgtgcgcttccactccaggatcaacatgccctgcgtcaaccctgacaccggactggttcgtatgctaaaaattccctcctttgttgtttaccaccaccacctgcccattgcacatgccaccacttcaattccctcatcttggtattattactcattctgccttctaatgaccaacgggtaaagcacacaggaatatatattctgccagcaaattgattgctgcccacctgaacatgctctgattttgcaagtttttgaaagaacttgcactgattgatgttatacatagtactgtttgatagtagttgcttccaattagattaacggtgtgcttagttcacgttaaaattggaagtttggttgaaattggaacgatgtgacggaaaagttggaagtttgtgtgtgtaggaaagttttgatgtgatggaaaagttggaagtttgaaaaaaaaaagtttggaactaaactcggcctaaattaaagttcagcagcaactgtaaatctgaaattctgatgaatgttgaagtaccacctataccatacctttgtttataacatactgatcctctgcatacttgaaatgctgctgactgcggcagcaagatctatgaactgcgtcactgcatgcattcctgcatgtcatgattcctttgatacgcaggaaggaccgaaggatgtttgaatcatattgctgcctgcacgctagtgtctgaattttgccaggaaagatcttcagtttcaaacagatagacattctaatgctgaagtgatttcaataggttcattaggttgtaatgatgtgattgtttcactggaaggttactgaatttcacctgaaaacactgcaaaattatgcagaaattgataccatagacacatatagctagaaaggttcagaatgttagtaagttattactgctagtacttaccaattcaattacaatttaaacctgtgggttctgaattctgattacacacgccttaatgagatggtgagaattgattgtaatcatttcactttacttcatcaggtcgaaagcaagaagttccatatgctggcaaactggcagagggagtacaccatggagaatatcctgacgcagctgaagaaggagatggccgcgccgcacagccgcaagctggttcagcctccagaagggaccttcttctagtcataccgtgagatgttcgagggcatgttcctgttgctgctgctgctgctatatactcatataggattggattgctatctctgtccatggcacgcaccgttcgtaactatcacctgcccccaaatctgtcacctgaaaggtagtagcactagatgtgtatgtagtgcagtgttgttggtaattactgaatcgccttgctaatgcctaatggctgccctgcttgctatcatatgcatgccaatgtgaaggacaggtttggcttggtttgaacgctgagagagattgaataacacgagacctcctgtatctggcaccgtatagactcctatgatttatgcatgtgtgttaagact
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| CDS seq | atgacgatcggcggcgcgtcctccagcgtcgtagtagtgccacgcaacttccggttgctggaggagctggagcgtggcgagaagggcatcggcgacggcaccgtcagctacggcatggacgacgacggcgacgacatcttcatgcgctcctggaccggcacaatcattggaccactcaactctgtgcacgaggggcgcatctaccagctgaagctcttctgcgacaaggactaccccgacaagccgcccaccgtgcgcttccactccaggatcaacatgccctgcgtcaaccctgacaccggactggtcgaaagcaagaagttccatatgctggcaaactggcagagggagtacaccatggagaatatcctgacgcagctgaagaaggagatggccgcgccgcacagccgcaagctggttcagcctccagaagggaccttcttctag
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| Protein seq | MTIGGASSSVVVVPRNFRLLEELERGEKGIGDGTVSYGMDDDGDDIFMRSWTGTIIGPLNSVHEGRIYQLKLFCDKDYPDKPPTVRFHSRINMPCVNPDTGLVESKKFHMLANWQREYTMENILTQLKKEMAAPHSRKLVQPPEGTFF |
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| Function | Ubiquitin-conjugating enzyme E2 variant 1C [UniProtKB/Swiss-Prot:Q9SJ44] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0031970 | OsCMeo_04g0031970.01 | Chr04 | 34899816 | 34902005 | + | NAM | ||
| CDS seq | atgacgatcggcggcgcgtcctccagcgtcgtagtagtgccacgcaacttccggttgctggaggagctggagcgtggcgagaagggcatcggcgacggcaccgtcagctacggcatggacgacgacggcgacgacatcttcatgcgctcctggaccggcacaatcattggaccactcaactctgtgcacgaggggcgcatctaccagctgaagctcttctgcgacaaggactaccccgacaagccgcccaccgtgcgcttccactccaggatcaacatgccctgcgtcaaccctgacaccggactggtcgaaagcaagaagttccatatgctggcaaactggcagagggagtacaccatggagaatatcctgacgcagctgaagaaggagatggccgcgccgcacagccgcaagctggttcagcctccagaagggaccttcttctag
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| Protein seq | MTIGGASSSVVVVPRNFRLLEELERGEKGIGDGTVSYGMDDDGDDIFMRSWTGTIIGPLNSVHEGRIYQLKLFCDKDYPDKPPTVRFHSRINMPCVNPDTGLVESKKFHMLANWQREYTMENILTQLKKEMAAPHSRKLVQPPEGTFF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.160727 | 21.644508 | 35.057365 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0684800 | RBH | 9.452301 | 7.848275 | 19.063448 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58800 | RBH | 6.104258 | 5.059519 | 4.584723 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0684800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031620 | RBH | 1.674300 | 30.920969 | 16.181778 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0032410 | RBH | 0.257241 | 11.488867 | 5.111423 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0004680 | RBH | 7.087367 | 115.063004 | 43.429100 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031810 | RBH | 0.514471 | 0.392590 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0032080 | RBH | 20.082491 | 23.201090 | 31.925591 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0553200 | RBH | 0.054139 | 0.076051 | 0.093435 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0030700 | RBH | 1.851031 | 0.394098 | 2.726482 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0559100 | RBH | 26.868599 | 8.928265 | 4.1492865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0031180 | RBH | 1.251791 | 0.272137 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030970 | RBH | 1.230342 | 16.896187 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0031110 | RBH | 17.040640 | 28.157173 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031680 | RBH | 0.415147 | 2.541489 | 1.813856 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031680 | RBH | 0.328941 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G031160 | RBH | 2.085549 | 0.000000 | 4.434421 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030900 | RBH | 3.459232 | 0.000000 | 27.959084 |
