Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0031480 | OGI:04101490 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:34523961-34526399 | ||||||||
| Gene Symbol | DOF17, OsDof17, Dof17, OsDof-17, OsDOF18 | ||||||||||
| DNA seq | actgtttcacttacattttatttgatcttttcaccagggttccgaaatacaagtagccaaatatccgcttctgtagctccaaacgggaaatatgtggtctgtgccagtgaggactcccacgtgtatgtctggaggcatgacaatacttcccatccgagcagaagcaggagtgcagttgatgtaaccaactcatatgagcatttccattgccatgatgtcactgtggctatcacatggcccggcgctgaatcccgtggctcattcgggtcccgtagcagcagaaacagtgattcagacgatgcagtgatgaacacgggtcgggatgcccctgtagagaacagtgagcatgatctgaatggcactgtcaatagatgcaccaagcgcccagtttgtgaaggtgttgcaagcacaagcaatcctccagcggatggagtatcaacgtcctggcctgacgagaaacaatcgtctgccaagagcagtcctggtcactgctcatccgacctttgcattggagctttggatgttcagcgccggtcagcttggggattggtgattgtcactgcaggaaggggtggtgaaattagggtgttccagaatttcggcttcccggttcaagtgtaaagctagtgtgagaatattcagagatgtccgtttgtttactgtatagatatcgttagtttttttctccatttcacctagttcttttactagctaaaagatttccctgtttcgctgtcaggttgggagccccagtagctcaatccaacttgctaagcaccacactattttttaccctctgttgatacaaggctttgtgtaattgtatggttaacaaccaatacatcgatttgtttgttcatatattgtttcttggttatacactgattgatatatgaagataatttctaactccatgataatccattgtgcaatcttccctcccagtatggcttttattgaactacactgttcagcattctacagttcatttaattactaggagcacatgctagaatcttgatggcaacaaactcttattattgtcattaacactgcacatacgtaaacacatcttccagctacagatcacgattcactgatcccaatgataatcaccacatcattgtgcaagcgtatgaaattggtgagagaagaaaactgcaaacaccacgttggataattgagctgcttaattacattcccaataattatatcataatccctagctcagcaaaatatacttcataccgatcgaagaacacactacctgcataccgatcgaagaacgcactacttgaggctgctttgctaaaaccggagccccccaaaacacgagcgaccagctgtgtactgttcgtcagttacccggcggcggccagctgagatcaaggccggcgatgtcggcgaagttgtcccacgccgcgccggtgaccgccgttccatcgtcccacggcgcgatcccgcagttgtacaagtcagggacagccgatgcccaagagaacgcggccggcgcaacgccggcgaggccgaactgcggcaggaaggcgccgtcactgaggaacgggaagccggctgggaggtcggcgtacgcgtccgtggtggaagtcgtgggtggcggcggcgacgccgaggaagggtcggcgtcggcggagaccctgcggcgcttgccgccgccgccgcggcgagaggcgccgcccaccggcacgtcgcggagcgtgcccccgtgcgtccagtagcggcggcaggcgcggcagaagtggcgcggctgcgacgtgctgtagttgttgtagtagcagaacttggtgttggtggatcggcagcgcgggcactccagctgctgctgcttcttctcctgctgccccgtgcgatctccctgcaaatcaaaaaccacatccacatcactggccgatccctacgcacttcatttttttcgtgaacacgcaaaaaagattacacgtagtatattagaataaaaaaattgtagttacacaacacaatcagtcagaccgacttatgccagagaacggctaaacacaaactctagaaagtagaaagagcgagccacgctacattctcaacaaatctccagaaacggcaacactagctaaaaaccacgtatatccctacacacttccacagctaatatgcaactgcatctgcaagtgtaattaagtatgtaaccgagtaattaactgacctggtgcggcggcgaggcgtcggaatcggccgggcgcttgttggaggcggtggcggcggcggcggagagcacgagtgacggggaggaggcaaccgcaggagccatttggtcggttgcagcagcagaagggcatgccgcgcgcggtcagactgctggccttaataacctcgcgctatctacaatctctgccgcttaatctgcagtttctgtgggcgcgtgatctcgatcgtctctctcgggag
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| CDS seq | atggctcctgcggttgcctcctccccgtcactcgtgctctccgccgccgccgccaccgcctccaacaagcgcccggccgattccgacgcctcgccgccgcaccagccgcgccacttctgccgcgcctgccgccgctactggacgcacgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggcaagcgccgcagggtctccgccgacgccgacccttcctcggcgtcgccgccgccacccacgacttccaccacggacgcgtacgccgacctcccagccggcttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgccggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtgggacgatggaacggcggtcaccggcgcggcgtgggacaacttcgccgacatcgccggccttgatctcagctggccgccgccgggtaactga
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| Protein seq | MAPAVASSPSLVLSAAAATASNKRPADSDASPPHQPRHFCRACRRYWTHGGTLRDVPVGGASRRGGGGKRRRVSADADPSSASPPPPTTSTTDAYADLPAGFPFLSDGAFLPQFGLAGVAPAAFSWASAVPDLYNCGIAPWDDGTAVTGAAWDNFADIAGLDLSWPPPGN |
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| Function | Dof zinc finger protein DOF5.4 [UniProtKB/Swiss-Prot:Q8LDR0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0031480 | OsCMeo_04g0031480.01 | Chr04 | 34523961 | 34526262 | - | NAM | ||
| CDS seq | atggctcctgcggttgcctcctccccgtcactcgtgctctccgccgccgccgccaccgcctccaacaagcgcccggccgattccgacgcctcgccgccgcaccagccgcgccacttctgccgcgcctgccgccgctactggacgcacgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggcaagcgccgcagggtctccgccgacgccgacccttcctcggcgtcgccgccgccacccacgacttccaccacggacgcgtacgccgacctcccagccggcttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgccggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtgggacgatggaacggcggtcaccggcgcggcgtgggacaacttcgccgacatcgccggccttgatctcagctggccgccgccgggtaactga
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| Protein seq | MAPAVASSPSLVLSAAAATASNKRPADSDASPPHQPRHFCRACRRYWTHGGTLRDVPVGGASRRGGGGKRRRVSADADPSSASPPPPTTSTTDAYADLPAGFPFLSDGAFLPQFGLAGVAPAAFSWASAVPDLYNCGIAPWDDGTAVTGAAWDNFADIAGLDLSWPPPGN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0031480 | OsCMeo_04g0031480.02 | Chr04 | 34524003 | 34526262 | - | NAM | ||
| CDS seq | atggctcctgcggttgcctcctccccgtcactcgtgctctccgccgccgccgccaccgcctccaacaagcgcccggccgattccgacgcctcgccgccgcaccagccgcgccacttctgccgcgcctgccgccgctactggacgcacgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggcaagcgccgcagggtctccgccgacgccgacccttcctcggcgtcgccgccgccacccacgacttccaccacggacgcgtacgccgacctcccagccggcttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgccggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtgggacgatggaacggcggtcaccggcgcggcgtgggacaacttcgccgacatcgccggccttgatctcagctggccgccgccgggtaactga
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| Protein seq | MAPAVASSPSLVLSAAAATASNKRPADSDASPPHQPRHFCRACRRYWTHGGTLRDVPVGGASRRGGGGKRRRVSADADPSSASPPPPTTSTTDAYADLPAGFPFLSDGAFLPQFGLAGVAPAAFSWASAVPDLYNCGIAPWDDGTAVTGAAWDNFADIAGLDLSWPPPGN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0031480 | OsCMeo_04g0031480.03 | Chr04 | 34524885 | 34526262 | - | NAM | ||
| CDS seq | atggctcctgcggttgcctcctccccgtcactcgtgctctccgccgccgccgccaccgcctccaacaagcgcccggccgattccgacgcctcgccgccgcaccagccgcgccacttctgccgcgcctgccgccgctactggacgcacgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggcaagcgccgcagggtctccgccgacgccgacccttcctcggcgtcgccgccgccacccacgacttccaccacggacgcgtacgccgacctcccagccggcttcccgttcctcagtgacggcgccttcctgccgcagttcggcctcgccggcgttgcgccggccgcgttctcttgggcatcggctgtccctgacttgtacaactgcgggatcgcgccgtgggacgatggaacggcggtcaccggcgcggcgtgggacaacttcgccgacatcgccggccttgatctcagctggccgccgccgggtaactga
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| Protein seq | MAPAVASSPSLVLSAAAATASNKRPADSDASPPHQPRHFCRACRRYWTHGGTLRDVPVGGASRRGGGGKRRRVSADADPSSASPPPPTTSTTDAYADLPAGFPFLSDGAFLPQFGLAGVAPAAFSWASAVPDLYNCGIAPWDDGTAVTGAAWDNFADIAGLDLSWPPPGN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0031480 | OsCMeo_04g0031480.04 | Chr04 | 34524980 | 34526399 | - | IsoSeq | ||
| CDS seq | atgcccttctgctgctgcaaccgaccaaatggctcctgcggttgcctcctccccgtcactcgtgctctccgccgccgccgccaccgcctccaacaagcgcccggccgattccgacgcctcgccgccgcaccagggagatcgcacggggcagcaggagaagaagcagcagcagctggagtgcccgcgctgccgatccaccaacaccaagttctgctactacaacaactacagcacgtcgcagccgcgccacttctgccgcgcctgccgccgctactggacgcacgggggcacgctccgcgacgtgccggtgggcggcgcctctcgccgcggcggcggcggcaagcgccgcagggtctccgccgacgccgacccttcctcggcgtcgccgccgccacccacgacttccaccacggacgcgtacgccgacctcccagccggcttcccgttcct
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| Protein seq | MPFCCCNRPNGSCGCLLPVTRALRRRRHRLQQAPGRFRRLAAAPGRSHGAAGEEAAAAGVPALPIHQHQVLLLQQLQHVAAAPLLPRLPPLLDARGHAPRRAGGRRLSPRRRRQAPQGLRRRRPFLGVAAATHDFHHGRVRRPPSRLPVP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 34524519 | 34525228 | - | OsCMeo_04g0031480.02 | OsCMeo_04g0031480.01,OsCMeo_04g0031480.02 | All |
| A3 | Chr04 | 34525725 | 34526158 | - | OsCMeo_04g0031480.04 | OsCMeo_04g0031480.03,OsCMeo_04g0031480.04,OsCMeo_04g0031480.01,OsCMeo_04g0031480.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.979979 | 21.586143 | 3.442340 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0678400 | RBH | 0.222759 | 0.171140 | 3.529908 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g58190 | RBH | 0.084107 | 0.105183 | 0.778449 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0678400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0031120 | RBH | 0.401640 | 9.104894 | 6.342482 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0031900 | RBH | 0.000000 | 1.787179 | 0.959969 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015590 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0031300 | RBH | 0.000000 | 0.249001 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0031570 | RBH | 0.000000 | 0.999751 | 7.693563 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0546600 | RBH | 1.420553 | 11.911094 | 23.673765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0022490 | SBH | 0.041225 | 0.232685 | 0.386898 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0552500 | RBH | 2.1771215 | 9.7211095 | 6.6910575 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022990 | SBH | 0.069871 | 0.052083 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0030480 | RBH | 0.0 | 13.877007 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0030610 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0031160 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0031170 | RBH | 0.0 | 4.687109 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G030650 | RBH | 0.0 | 3.000110 | 1.132134 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0030350 | RBH | 0.0 | 10.208505 | 4.145849 |
