Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0026400 | OGI:04061810 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:30528238-30536662 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | caacttcaccgacgacgacgacgagctcaccatcaacctccacgcccttctcggcaacaagtaagcaaaacaaatttcaacgtattgtcatctgctccggttagctcttcttgtgttcttggtgctgattgattggttctgcaggtggaacacgcacatcaagcgcaagctcatgagccagggcatcgatccacagacgcatcagccggttagcgccgggaccagcgttgccgcggcaagcgagctgaccacaacggccagcactgtcggcttcccatccctgcaggcgccggcgccggcatgagggagctcgaggaggaaggagggaaggttgggaggggtcttcctcatagtcgttgttgacggcggaggtgtctccggcggaggccgagtcagcggcggaggtgagctcgagctccgcgtcgaggagcaccgcgaagtcatcgctgccgctcgacgacgacggggaggacggcgacggcgacggcgacttggcggcggggcttatggtcgagggcaaagggcgtgctttggtcggttggggtgggctggatgcgcctccgcgctcgcccacctccgctccgctgccatgctcgccctccgccgctccacccgctgccgcgctcgccctctgcttctttgcccgcggccgtgcttgcgctccactgctcagcccgctgcgcttgcgcctgccgccgctccgctgccgcgcttgccctctgctgcgccacccgcatccgcgcgcgctgctccgcctgccgccggcctccctcactgaagagaaatagagaagagagaaaagaggagagaaggagaaggaaggagaagaaaaaaaatgtgcagctaacatgtgggccccacgtatttttaaatttttttttggctgactaggatgccacgtcagcgaaaccacccatatatactgtctagggaccttgagtgaacggttttgtatagtttaggggtgaagatttctggttttgtggttaagggatctcaaaaaatctcgctgttaagttgagggacctccggtgaacttatttcaaataatatttctttatgcctttatgggcctttacgcaaaattggcagagcccaaaatcctaaaaggccttttttgacaggctctgacaatgcgtgaacagtatcctctgccttgcagagaaaaccgtagagcgtgccgtctagtcagttttagccatcggatcatcctatcaatggccaggatggagaaggaatccctgtctctctcctccattaattacacgcacgtctcgagccccccggccactgtaccccgcgcgccatatcgccaccgccaccgcccacccgaaacctcccgctcctctcgaacctttccgaggcggcgaaacccccactccccgccgcgctgcgccgcgccgccgcgccctctcctcccggatctcgccgccacgcggctgcggggtggtcgggggttcaaggcgtacgggtggcgcggctaaatccgcggcgccgcatttggttggggggatatgcccaattctgtatgcggccgccggatttgagcgggcggaagcggtgggcgggcgagccggcgaaccactcctcgagcggggcgccgacgcaggagaaggagcaggtggatgggcgggcgcggtggattctccaggttcaggttcgtctcccacccttcgtctccacagccacatcctctctcgcaccggaggaccggacgtgcgctaggtgttccgtttccggacgcgtgaacggtgaattgggcgcgcgatcgcggtgcttacgcgtgtggggttagttggatttgtgggtttaaccggttgatctgtcaaggcgcggggagagcgcaccacgtgagcacgcgatcgaaccctacgcgtgtgcgcttgtcgagtgcctgattggtacgcattccagtccagtattcagatgaggtgatcggaacctttactgagggttacgagggcgcttcaatcaattgatgaatagcgaagttagcgctcgtggggaattggtctcacgggataggtagaatcaattttttaggcaaaatgcacatagaaactgcggagggtgtttagatatgtcttccaggtatctccattgcccggaggcccagacattacctgtgcgttttgctgcatgtacgttcggcttcagttgtcagtttgagcaatggtgaacgttctcgttagcatggtttttatggcagagtaggttggttcctgtgtaatgcacaagcgaatagtctagaaatgcctagtgcttactacatgtcatcctgttgctagttgcaacgtgcaacctgtcagctctgaattcttctgatcaccatagtccatgtgtggctctatatatgggctctgcacatgtacgctccatgctgatactgtcaaccattgccatgcagactgagcatgctctcagctttcaaggaacgtggaaagcagactgttgagcagggagtatatatcatgtgttaccttttttctttggggtgtgtgtgtgagtacagttcaacgagcttgcttcaccttcgtctggttgcgtgtgcgcgcgcacacgctatgtccactatgtttgcaggtaacaaacacctttggcaatgtggtgttcgcaggtaacatatattttcccctcgcaagcaaaatttttaaaagaagctaatggctagttttcagcactagtatcaggtttttctttctgcatgcggattgctttttggcaatttttttaagaactgagccttttagcaattctcgccctgctttcggcaaccattgtcaaagtaacaattttgtaacttgtacccctctttatcttaatgaaatttggtcggccttgctggccgacctggcaaaaaaatatatttccccctccagttgttaaaaatcttaagatactagcagcatgttcttttgaattgtatttataggtttttattttatttttcgttgcatacaaggctagttctctatacatattagaaatggtcagttcgtttcctgcaatgtttttgttttatggtggaatatttgatggacaggattggcctatctcacttcctatctcaaagcgaagaagcacaattcctgcatattctctaaaaacagtaagaagataggataggtggggggtgaccacacaaaaacaacccagtaattagctagagctaagctgctcccaaaaaaaaaaaattgtgccatcctcttattattccgtatgtgcattagaatttattatttgacacatactaattccttttgtcattgtcatattgtcaatgaaacatttaaacaccacattaatgtctccccatcctaagattttgttttcagttgcattgtcatttagatataatcactcctatgggtttttgcagtcctgttagaagctcttcttgctagtttattctgcttgactgcttgtaagttgatttgttgaatgcttcattgaagattctttctgaaaatgtaatcataacttaattgttccatcttcgccgcaaaaaagaagaagaagaaaaccttggattgttccatctattttgattgcgttatgactttctaggcaactacaatatatatattcttcagtaattttgcaatatagtacaaaagatatagctatatataagtttactttacaaggcaaaatttgtgtacactttcaatttgaatgcagttttgtgtcctcaatgtaaatttccaatctattataataaaaatgtgcttgatgcttttaaaaagaaagtttctgtttcatgggaattcatgtacccaatatcgaatgccctgtgttgcaatgatttgaaaattgctactaaaatcattaccgtagtatacaaagttctacaaacctgcaattcaatatcaagtttgatctagaagtaaaggaaaaaagaagacaagaaccaatgtgaatggttcatcatgtcccaagtacaacttgccttgtttggatcttgacgtgtgggatgaatctggcattcattttcctttttgcatgtctgtacaactttatgtatacttcactcatgattattgaatactgcaaatgttggatttcactatttctgcaacggggatgtagccacatgtgcagggcacagaaatgtttagttttggttgttattgcgacctatgttctccaatacatgttgtttcctattatgccaagttgactgggttaattagtgtcaactctgaatacagaaaggttgttttgttgcttcatcaattttgtgaagctcatgtacatacttcggtaattcaacaatcctatgtaactgagcctagcttggtggaaggtcagcatctccaccctccacaacacctgggtttgacctcgctttgagcttaggttccttttttcttcttagtggagaaaatcctaatttctcttatgtattctttcttgcattgagattcctgaatacctgttgatagttttatttatagttggcaaatttgactgaatcatccagttgatcccagattattcacatgtttcatatacagcacaagttcgttccatattgagaaaggtttgcaagactgtgaactagatatatgagccatctttcagttattattattaaattggatgccaacattgcgtcAaaaaaaaaaaaaaggatgccaacagaatatgaggaactggaaggcaccagccctcagttttccttcaacaggcatgcaaggtacagaacctgaggtggagaatgaaatttcaggattcaaactccaggaatttaatgatgaattttaggtggatggaatcttatatggtcaactttgtaaaagaaaggttcctttgttttgaggcatctgcttaagatgtttaaattcatgctttatgcctttgttttcttttcctttttctggagagacacaatggctattgttttcaatataaccttctttcagagctcgttatcatcgcctaattagcagaatcttatgcaataaataatgtacatataacaacgtatatagtagtgttgtcgtgtatataattagtcttcagcagtagctttttttttttgttgagataatcttcagcagtagctgtagttaacatcattcttaaaaaacatcattcagtggaagcaaaagtcttctaacatatttgcctttagcagcaattggcagtattgctttccgttttatatatatgacatcttgcagcatcggatatgatgtggtttagctgtcgtggcatatacaatcatcactgcagtagacttgtttgtaaggttgttaggattccaatcttagctggagcattgtgttgtcaaatggtgagatctccccttattattcgctattcacatatatggcacatgagaacatccttagacttagtatatgtatgggctgcgaaataaaataaaaaaatggtctgtgttactataaattgcatgcattgttctgtagttccatgcaagggcaaaaaaaggtactattatgtacgattacattctagtaagactggaaaaggtgttactggagatcttccTttttttagcaaaggaatactagagatctgccttatacgttagaacctaacacacttgactcacctttgtaatgcattttgatgatgatattttttcagcaaaaatgccaaaaggggtaggagctctaactattgcattgaaggaggtaagaaatggaattttaataagcacaaaacaaggggatattacagtgctacgtgttctccaaacaagctccgaagcacatcatgtaacgctttactaataatagattgttcaaccacatggagtttatttctgtttgcatcatgtgaagtttaatgttaccatttgcatcctatgatgcaatagcctccaaacaagttctgtccggtgtgcatcatcatgtaaattgtaactgtatgtgcttgttgttaccagggagctgtttttgctgcttgtgcaggacaaattctccaggctttccctttttggtactttaatttctcccctttgtcatttcgatcgaaccttttgcttatctacatgcatgtattacaaactagtcctttagataatcaggatcacgaactggtggcaattccttgaagggttgaaaagctaaatcacatctgcaagtgcaagtttgcctcctgattttggacagcatatctacaattgcaggtggaaatggaattcaatgtgtcacaggaaggtaaaaatacatattcctttttctgtctgatgaatagctagatattgccacgctcggtgtcattgtagctccaatatgcggtgttgtactatgagagaaattaaacttcagttccaaaacatcaaattggagaatataatagaggttcattactttgattctgaagcctgactgctcgagtcttaaactaaatttagtttggagttgcttctcattgcagatgttaggttggaggtcttagcaacaatctaactaaatattcatgcttgtatttttctttagaataaccaaatgcttgtaaagtttttggccagtaaacaatgtttttaacttgcttgggattgcactagaccttacgtactactccttccgtcttaaaatataactatttttagagttaggtgcgtcttaaggagaggggtaaaaggactatactatccccattaatatatcttgggcttggtgtgttgggctgatgcaggaaaaagggcataggtgagtgtaggggtattttaggtactacacaataaaatgtgcactttagaagctacaagttgttatattttgggacaaaatttaaaccctataagttgctatattttgagacggaggtagtagttcttttgttctaattgtgaaatgatgacatgctaatcttcattacagttcttgtgaccaggagatattgtctaactcacaccttttgcaggcattagtttgagattgctctcaagaagaatactaatgagagcaacagtgttttatggagcttcagtagaagactgtgtgaagtaccaattgataagtctgacatgaaagcgagacttggagagcattttgacctaacttagagctaattctttacttatttctttcattccaaagaactttaatattgaaccaccaccatctttttcttgaaaataattgctgttaattaacataaaaaatctttggatgccgatgggggacccaccctgtccatgagaagtgcacgatgcgctgctctaaaatatcgtagaaatttcgctatagagtatgtttgggttaatggtcgcggtttttgttttcttttggtgttcccttgtactaaccccggacttaacgggcttgtatgagtcttcttagactctttccttatcctaaatataatgaagcccaactatcctgcttgtttgagaaacaaaatcctagaaattcctgatgctgcacatacatgttataaaccccatgtattaacatgctttatatgcttataattcgtctatttatgtattatacacaagatttgtcatcaatatggatgcagtttacttttagttggtgtttttggtgaaaactttttttcggtttagaactaatctgaattatctacatcttggtctggtttcatctatttaacagacaagatatattctaaaaaatatgactgcaatgctaatttcatttgatacttggatcagcataatctacattttggacttctttttttgacgaaaatactgtcaatttggacttgctagctagatgtatattatatatctgaacagttcctgcactgatcaagttagtaccagtggcaataaccactcactgatattcttattgggggatttccttgtggttattagtgttgtatacttgcttaaacatattgtaggctgaaattgtaaggtcaatacttgctatcattgttgttatttatcaggtagaagttgactacttgtggtctttccatctgaagtttttgttttactcatagtacatgaaaaattttaaatttgcttaatcttcgcttatgctagtttatcatgaaatgaatcaagatattccataagttgtaacatgtcttgctggtggtccatgatttgtagatttctgacattgaaagcttaattcttttatttttgtggttagttgacaatagcatgtgatatactcaccttattctgctgcattatcacatgatttgttaacacaccattctacttcagatttatgttgcaataacgttggataatctcagaacaattaatgtaacctatttgtgttgctgccaatcagcctatccagtcaagcaaccgtgcacttgctgacctcccgagccttcttcagaaatctccttcaccatctgtagcgtttgttaattttttcctggctaaaaaggtaattactactgcaccttagcctcttttcaggttgtgaagcacacctcccaacatgacatcaactag
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| CDS seq | atgagccagggcatcgatccacagacgcatcagccggttagcgccgggaccagcgttgccgcggcaagcgagctgaccacaacggccagcactgcggcgaaacccccactccccgccgcgctgcgccgcgccgccgcgccctctcctcccggatctcgccgccacgcggctgcggggtggtcgggggttcaaggcgtacgggtggcgcggctaaatccgcggcgccgcatttggttggggggatatgcccaattctgtatgcggccgccggatttgagcgggcggaagcggtgggcgggcgagccggcgaaccactcctcgagcggggcgccgacgcaggagaaggagcaggtggatgggcgggcgcggtggattctccagttcaacgagcttgcttcaccttcgtctggttgcgtgtgcgcgcgcacacgctatgtccactatgtaacaaacacctttggcaatgtggtgttcgcaggattggcctatctcacttcctatctcaaagcgaagaagcacaattcctgcatattctctaaaaacacaaaaatgccaaaaggggtaggagctctaactattgcattgaaggagcctatccagtcaagcaaccgtgcacttgctgacctcccgagccttcttcagaaatctccttcaccatctgtagcgtttgttaattttttcctggctaaaaaggttgtgaagcacacctcccaacatgacatcaactag
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| Protein seq | MSQGIDPQTHQPVSAGTSVAAASELTTTASTAAKPPLPAALRRAAAPSPPGSRRHAAAGWSGVQGVRVARLNPRRRIWLGGYAQFCMRPPDLSGRKRWAGEPANHSSSGAPTQEKEQVDGRARWILQFNELASPSSGCVCARTRYVHYVTNTFGNVVFAGLAYLTSYLKAKKHNSCIFSKNTKMPKGVGALTIALKEPIQSSNRALADLPSLLQKSPSPSVAFVNFFLAKKVVKHTSQHDIN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0026400 | OsCMeo_04g0026400.01 | Chr04 | 30528238 | 30536662 | + | NAM | ||
| CDS seq | atgagccagggcatcgatccacagacgcatcagccggttagcgccgggaccagcgttgccgcggcaagcgagctgaccacaacggccagcactgcggcgaaacccccactccccgccgcgctgcgccgcgccgccgcgccctctcctcccggatctcgccgccacgcggctgcggggtggtcgggggttcaaggcgtacgggtggcgcggctaaatccgcggcgccgcatttggttggggggatatgcccaattctgtatgcggccgccggatttgagcgggcggaagcggtgggcgggcgagccggcgaaccactcctcgagcggggcgccgacgcaggagaaggagcaggtggatgggcgggcgcggtggattctccagttcaacgagcttgcttcaccttcgtctggttgcgtgtgcgcgcgcacacgctatgtccactatgtaacaaacacctttggcaatgtggtgttcgcaggattggcctatctcacttcctatctcaaagcgaagaagcacaattcctgcatattctctaaaaacacaaaaatgccaaaaggggtaggagctctaactattgcattgaaggagcctatccagtcaagcaaccgtgcacttgctgacctcccgagccttcttcagaaatctccttcaccatctgtagcgtttgttaattttttcctggctaaaaaggttgtgaagcacacctcccaacatgacatcaactag
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| Protein seq | MSQGIDPQTHQPVSAGTSVAAASELTTTASTAAKPPLPAALRRAAAPSPPGSRRHAAAGWSGVQGVRVARLNPRRRIWLGGYAQFCMRPPDLSGRKRWAGEPANHSSSGAPTQEKEQVDGRARWILQFNELASPSSGCVCARTRYVHYVTNTFGNVVFAGLAYLTSYLKAKKHNSCIFSKNTKMPKGVGALTIALKEPIQSSNRALADLPSLLQKSPSPSVAFVNFFLAKKVVKHTSQHDIN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0026400 | OsCMeo_04g0026400.02 | Chr04 | 30529534 | 30531419 | + | IsoSeq | ||
| CDS seq | cccgcgcgccatatcgccaccgccaccgcccacccgaaacctcccgctcctctcgaacctttccgaggcggcgaaacccccactccccgccgcgctgcgccgcgccgccgcgccctctcctcccggatctcgccgccacgcggctgcggggtggtcgggggttcaaggcgtacgggtggcgcggctaaatccgcggcgccgcatttggttggggggatatgcccaattctgtatgcggccgccggatttgagcgggcggaagcggtgggcgggcgagccggcgaaccactcctcgagcggggcgccgacgcaggagaaggagcaggtggatgggcgggcgcggtggattctccaggttcaggttcgtctcccacccttcgtctccacagccacatcctctctcgcaccggaggaccggacgtg
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| Protein seq | PARHIATATAHPKPPAPLEPFRGGETPTPRRAAPRRRALSSRISPPRGCGVVGGSRRTGGAAKSAAPHLVGGICPILYAAAGFERAEAVGGRAGEPLLERGADAGEGAGGWAGAVDSPGSGSSPTLRLHSHILSRTGGPDV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.229286 | 0.0 | 3.710159 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g51800 | SBH | 0.562343 | 0.034714 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0607200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011780 | SBH | 0.000000 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0026660 | SBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0011930 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0026380 | SBH | 3.092225 | 6.634496 | 14.432015 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0484500 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0025150 | RBH | 0.145415 | 0.225390 | 0.814655 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0488100 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0025630 | SBH | 0.111500 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0025450 | SBH | 0.468824 | 9.120244 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0025510 | SBH | 0.957238 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025930 | SBH | 1.086136 | 0.0 | 0.775511 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0026080 | SBH | 0.383672 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G025340 | RBH | 0.422964 | 0.025234 | 0.649160 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0025230 | RBH | 0.112664 | 0.0 | 1.628324 |
