Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0012470 | OGI:04062140 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:19539708-19541168 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgccaactcccaacccacccctccccctccctccgccgtacgactccctcccccgcctcctcctccaccaccaccgccgcctccctcgccgccgcctcgtcctcgccgcgcacgcgctcgccgccgtcgccggccacctcaccgtccccgccccgccgcaccacccgcacgccctcctcatcctcgcctacgcccgccacctcgcgtcgtggccgcgcgcgcccatccacctcctcctcctcttccgctcctccctccgcctctccgtgccgcccacccgccacaccctccccctcgccgtctccgccgccgccgccgcgtcagccggacgccacctcccgctcgcgctctcgctgcacgccgtcgccgtcacccgcaacctcctcccgttcccgcacgtctccaacgcgctcatctccctctacgccaggagcgcgctcccggactccgcgcgcagggtgttcgacggaatgcgcgcccccgacgtcgtctcgcacaacgcgctggtgcacgggtacgtcaaggccgggcggctggggctcgccgtgagggtgttcgaggggatgcccgagcgggacgccgtgtcgtggggcacggtggtcgccgggtgcgccaaggccgggcggctggagaaggcggtgcggctgttcgacaggatgaggcgggaagggtaccggcccgacgacgtcgcgctcgccgccgtgctctcgtgctgcgcgcagctcggcgcgctggacaagggccaggaggtgcacgagtacgtgaggcggaccaggccccgccccaacgtgtacctgtgcacagggatcgtcgatctctacgccaagtgcgggcgcgtcgaggttgcgcgcgaggtgttcgacgcgtgcccggagaagaacgtgttcacctggaacgcgctcatcgtcgggctggcgatgcacggccatggcacggtggcgctggactacttcgaccggatgctcgtcgaagggttccggccagacgggaccacgttcctcggcgtgctgatcggctgcagccacgccggcctcgtggatacggcgaggaggatcttctacgagatgcagcacaaccatggcgttcctcgagagctgaagcactacggatgcatggctgacctccttggccgagccgggctgatcgacgaggcaatggagatgatctcgagcatgccaatggaggcggacacgtatgtctggggaggcatactcgctggctgcagaatgcacgggaacaacgtggagttcgccgaggttgctgcccggcgtttgctggagctgaaccctgacgacggtggggtgtactccgccatggctggcatctacgctgatgctggtagatgggaggatgtcgcgagggttcggagatcgatggatgaaatggttggcatgaggaatgttggtcggagttcgattgcaatggagctcaaagatggtatcaagatgctgagctga
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| CDS seq | atggcgccaactcccaacccacccctccccctccctccgccgtacgactccctcccccgcctcctcctccaccaccaccgccgcctccctcgccgccgcctcgtcctcgccgcgcacgcgctcgccgccgtcgccggccacctcaccgtccccgccccgccgcaccacccgcacgccctcctcatcctcgcctacgcccgccacctcgcgtcgtggccgcgcgcgcccatccacctcctcctcctcttccgctcctccctccgcctctccgtgccgcccacccgccacaccctccccctcgccgtctccgccgccgccgccgcgtcagccggacgccacctcccgctcgcgctctcgctgcacgccgtcgccgtcacccgcaacctcctcccgttcccgcacgtctccaacgcgctcatctccctctacgccaggagcgcgctcccggactccgcgcgcagggtgttcgacggaatgcgcgcccccgacgtcgtctcgcacaacgcgctggtgcacgggtacgtcaaggccgggcggctggggctcgccgtgagggtgttcgaggggatgcccgagcgggacgccgtgtcgtggggcacggtggtcgccgggtgcgccaaggccgggcggctggagaaggcggtgcggctgttcgacaggatgaggcgggaagggtaccggcccgacgacgtcgcgctcgccgccgtgctctcgtgctgcgcgcagctcggcgcgctggacaagggccaggaggtgcacgagtacgtgaggcggaccaggccccgccccaacgtgtacctgtgcacagggatcgtcgatctctacgccaagtgcgggcgcgtcgaggttgcgcgcgaggtgttcgacgcgtgcccggagaagaacgtgttcacctggaacgcgctcatcgtcgggctggcgatgcacggccatggcacggtggcgctggactacttcgaccggatgctcgtcgaagggttccggccagacgggaccacgttcctcggcgtgctgatcggctgcagccacgccggcctcgtggatacggcgaggaggatcttctacgagatgcagcacaaccatggcgttcctcgagagctgaagcactacggatgcatggctgacctccttggccgagccgggctgatcgacgaggcaatggagatgatctcgagcatgccaatggaggcggacacgtatgtctggggaggcatactcgctggctgcagaatgcacgggaacaacgtggagttcgccgaggttgctgcccggcgtttgctggagctgaaccctgacgacggtggggtgtactccgccatggctggcatctacgctgatgctggtagatgggaggatgtcgcgagggttcggagatcgatggatgaaatggttggcatgaggaatgttggtcggagttcgattgcaatggagctcaaagatggtatcaagatgctgagctga
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| Protein seq | MAPTPNPPLPLPPPYDSLPRLLLHHHRRLPRRRLVLAAHALAAVAGHLTVPAPPHHPHALLILAYARHLASWPRAPIHLLLLFRSSLRLSVPPTRHTLPLAVSAAAAASAGRHLPLALSLHAVAVTRNLLPFPHVSNALISLYARSALPDSARRVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEAMEMISSMPMEADTYVWGGILAGCRMHGNNVEFAEVAARRLLELNPDDGGVYSAMAGIYADAGRWEDVARVRRSMDEMVGMRNVGRSSIAMELKDGIKMLS |
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| Function | Pentatricopeptide repeat-containing protein At5g61800 [UniProtKB/Swiss-Prot:Q9FLS9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0012470 | OsCMeo_04g0012470.01 | Chr04 | 19539708 | 19541168 | + | NAM | ||
| CDS seq | atggcgccaactcccaacccacccctccccctccctccgccgtacgactccctcccccgcctcctcctccaccaccaccgccgcctccctcgccgccgcctcgtcctcgccgcgcacgcgctcgccgccgtcgccggccacctcaccgtccccgccccgccgcaccacccgcacgccctcctcatcctcgcctacgcccgccacctcgcgtcgtggccgcgcgcgcccatccacctcctcctcctcttccgctcctccctccgcctctccgtgccgcccacccgccacaccctccccctcgccgtctccgccgccgccgccgcgtcagccggacgccacctcccgctcgcgctctcgctgcacgccgtcgccgtcacccgcaacctcctcccgttcccgcacgtctccaacgcgctcatctccctctacgccaggagcgcgctcccggactccgcgcgcagggtgttcgacggaatgcgcgcccccgacgtcgtctcgcacaacgcgctggtgcacgggtacgtcaaggccgggcggctggggctcgccgtgagggtgttcgaggggatgcccgagcgggacgccgtgtcgtggggcacggtggtcgccgggtgcgccaaggccgggcggctggagaaggcggtgcggctgttcgacaggatgaggcgggaagggtaccggcccgacgacgtcgcgctcgccgccgtgctctcgtgctgcgcgcagctcggcgcgctggacaagggccaggaggtgcacgagtacgtgaggcggaccaggccccgccccaacgtgtacctgtgcacagggatcgtcgatctctacgccaagtgcgggcgcgtcgaggttgcgcgcgaggtgttcgacgcgtgcccggagaagaacgtgttcacctggaacgcgctcatcgtcgggctggcgatgcacggccatggcacggtggcgctggactacttcgaccggatgctcgtcgaagggttccggccagacgggaccacgttcctcggcgtgctgatcggctgcagccacgccggcctcgtggatacggcgaggaggatcttctacgagatgcagcacaaccatggcgttcctcgagagctgaagcactacggatgcatggctgacctccttggccgagccgggctgatcgacgaggcaatggagatgatctcgagcatgccaatggaggcggacacgtatgtctggggaggcatactcgctggctgcagaatgcacgggaacaacgtggagttcgccgaggttgctgcccggcgtttgctggagctgaaccctgacgacggtggggtgtactccgccatggctggcatctacgctgatgctggtagatgggaggatgtcgcgagggttcggagatcgatggatgaaatggttggcatgaggaatgttggtcggagttcgattgcaatggagctcaaagatggtatcaagatgctgagctga
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| Protein seq | MAPTPNPPLPLPPPYDSLPRLLLHHHRRLPRRRLVLAAHALAAVAGHLTVPAPPHHPHALLILAYARHLASWPRAPIHLLLLFRSSLRLSVPPTRHTLPLAVSAAAAASAGRHLPLALSLHAVAVTRNLLPFPHVSNALISLYARSALPDSARRVFDGMRAPDVVSHNALVHGYVKAGRLGLAVRVFEGMPERDAVSWGTVVAGCAKAGRLEKAVRLFDRMRREGYRPDDVALAAVLSCCAQLGALDKGQEVHEYVRRTRPRPNVYLCTGIVDLYAKCGRVEVAREVFDACPEKNVFTWNALIVGLAMHGHGTVALDYFDRMLVEGFRPDGTTFLGVLIGCSHAGLVDTARRIFYEMQHNHGVPRELKHYGCMADLLGRAGLIDEAMEMISSMPMEADTYVWGGILAGCRMHGNNVEFAEVAARRLLELNPDDGGVYSAMAGIYADAGRWEDVARVRRSMDEMVGMRNVGRSSIAMELKDGIKMLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.235595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0401200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g32870 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0401200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0011980 | RBH | 0.0 | 0.624483 | 0.071869 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0012780 | RBH | 0.0 | 0.0 | 0.216926 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019780 | RBH | 1.024756 | 0.0 | 0.230695 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0012130 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012420 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0312500 | RBH | 0.185483 | 0.3481335 | 0.1390275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011350 | RBH | 0.0 | 0.0 | 0.084357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0309500 | RBH | 0.293846 | 0.2738195 | 0.658186 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0011970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011590 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0012120 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011490 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011480 | RBH | 0.0 | 0.0 | 0.0 |
