Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0009590 | OGI:04053050 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:16139643-16146824 | ||||||||
| Gene Symbol | PRD1, OsSTA121, STA121, OsPRD1, - | ||||||||||
| DNA seq | atggaatccgacggcgaggacacgccgccgccggcggcggcgcgggcgtgcggcgcgggccaccgcgcgtcgcactcgctgccgacctcggcggggggccgcgtctgcctctcctgcgccgcggcgctgctctcctcggccgcctccgcgccgtcgcaccacgtctcccacgcgctcgccgccctctccctggcgctcgccgacccggccttcctcgccccgctccgcgccgcgcacccgcgcctcctcgccgcgcccctcgccgaggcgctcgccgccgccgccgcccgccgcgacgccgcgctcgccgcccaggcgtccgacctcgccgccgacctcgccgccgccgtgggcgcccccgcggcctccgacctcgtcgcccgcgtcgcccgcgccctctcctccggctccctcgtcaagcacctccacacggtacgtgcgcccgctgcctcaaccacactcgctgttgtctccgagaaatccgtgcgctactgtgtgtgaggacatggatgccggtgaggtcagggtgcagtggaggatggagtatttgagtgtttgaccaatatttcactggcatatggcgttgcaaacgacattaatctgacaggtatcttctgctgaaggaaacggaggaacattgtgtttgttttgctctgcaactctgttatggaaatggtgcttataatgtcatttcgaggtagctttttgtagataatatttccagtttgttcggctaatctgaatattttatcagttatttccacatattcgttgcttccattgatgatttctttcttaatgccttacacatggcatgagagttttactactcctaagctggatcatataatttgtgcagcgtctgagtcatatatttccttggtgtcataacaaggcaggaaaatttcatatataaatatattagaaacattttatagggatgcttagcaaacattttataggggtgcttagcttaacctgttatatgagtgaaaataatgaactctgatgttaatcataatcaattacctaatcattttttagcaatattacataatcatttaatctattagtttcagtctcgggcatatatttgaaagctgccagcacttgctgttaggttttaggccgcagttggatgacggcttgatttcccttttaccgtaattacgaatttacgattcctgactattgtatctgatcaattgggctgcagtccttttatatcatcgtttgactgggcagactggaccctttaaggtgtgaggcttggtactctcttgtaactgtgctgaattagtggcaacaacactattgtaattttactgaatatatttgctaccctaatttctgacccgtacatttatgtcagtacagctacactgtttggggatcctgctaaattctaccaaagatgctgcagcttacattggagataaacaatctctttacttaaaccttgtcaacaatctccggctaccaaggttaataccattgcatattgacactttcctcgccttgcgaataaccttatctgacagcatcattaacttgttctggtacagcgatgaaattcgtggagagatactctttgtactatacaaactctcactgttaaacgccaccccatgggatgacatatgtgataatgacaatgtggatctttcagcgattggaagaagcttgcttcaattttctcttgaagtcctactcaaaacccaaaatgatgatgttcgcctgaactgtgttggttggtatattcttatttttcttcaatatagatattgatttcttacaaaataaatacattacattcgcatgcatgttatggacagagaaaaggtagcactatgatgcatttccatatgatgatggtttacttgctgtactggcacatgcaatttatagcacctccagatatgcagtcaaaattcttgatgttctttgccttgttatggttcttgagaggctggatataacttcaattattagttgttcttatcatacgattcatatgactattaattcattaaagttatagaaaattcagcactacgatttttttctgtaccatatccacacatggtgttcatgtgagcatttaaatattaaatatatgattagttaacgattgaaaagaagtttaactgaatgtctctcacggtttgaggaacttgtgttctgagagagtacaaaaagatagcctgctgaagtgaagttatataaatccactaatttctgcagttgcatgtgtatgaaatttttttgagagttttaaaattgaaatggatgcttatgacagttctgggcttccaaaaatcttaagtattcatcgaggaagtgaaccattttagaaggtttattaagtaccttaaaatttcttcactgacaatttttcatccctctcttatattggtaattcatatacatttaatatattcatttaatttgtagtaatgagtttacattttctttttaatatagttatggaatagctcatcaatgttcaaaattgaaatgtcactaacttgttctatactcactagaatgcataatgattcttttgttgttcttccgcagcattgctccttactttagcaaagaagggggcctttgacattttactgcttagtgatccgagtttaatcaattctgctgaagcagaagataatgtgccactaaatgattctctcataattctgtttgctgatgctgtcaaaggatctctgctatctactaatatagaagtgcaaacagggacattggaattgatcttccatttcctgtcatctgatgcaaatatatttgttctgaaaacattgatagatcagaatgttgctgattatgtatttgaggttctcaggttatcaggtatgaggaaccatcttctgcagtcatcaaatgtctcacagtttctaaccaagctgttatatgtttcaggaaataatgatccactggtcatttcctctattcaagtactatccattttagccaattcagaggagagattcaaggaaaagcttgccattgcagtttctactttacttcctgttcttcactatgtttcagagataccatttcacccagtccaatctcaagttttacgacttgtttgcattagcatagttaattgttctggcattttgtcgctgtcccaagaagaacagatagcctgtactttgtcagcaattttgagaagacatggaaatggtgaacttggcatgagttctgaaacctttgctctggtttgctcaatgcttgtagatattctgaagttaccatctgctgatgacatccaaaaactgccatcattcattgtagaagcatcaaaacatgcaatctctttgacattctctcacgagtatgattgtttgttcctcacaccacattcccttcttcttctaaaagaagcacttatattctgccttgaagggaataaagatcagattcttcgcaagaaggttctggaggatagcatcattgaaacctgtgaaacatatttacttccttggcttgaaagtgctattgttgatggtaatgatgaagaaacattgtccggcatccttcagattttccaaattattttatcaagggcatctgataacaaatcatttaagtttgctgagatgcttgcctcatcatcatggtttagcttgtcatttggattcatgggcttatttcctactgaccatgtaaaatcagcagtatatttggtcatcagttcaattgttgacaaagttttgggcatcagttatggggaaacaattagagatgcatgcatttatcttccacctgaccctgcagagctgatgtatttacttgggcaatgtagctcggaagacttcaacttggcatcatgccaatgtgcaattcttgttatattatatgtttgttcattctacaatgaaaggtactgatctggtgcatacctggtacgttatttttggttaccttctaaaaaactgtatattacgttctctaatatgataattgtttactaatcaggctggctgctgacaatcaaattctggcttcagtcgagcaatacattcttctcaatggtgcgaagttcccccatgaaatcccaggctctctgatgcttactcttctggttcatctttatgcctttgtcagaggcatttcatttagatttggcattccacatagtccagaagctgagaaaacactgttccatgcaatggcacacaaggagtgggacttgcttcttatccgagtccatctgatagcgctaaaatggctcttccagaatgaagaacttatggaaccactctcctttcatttgctgaatttctgtaaaattttctgtgaggaccgaattgtcacgctttcaagcagcactcaattggtggacatacaaatgattgcagaactggtatattctggggaaacctgcatctcgtctttgctggtatccttattgagtcagatgataaaggagagcgcagaagatgaggtcctctcagtagttaatgttattactgaaattctagtaacttttccttgtacttctgatcagttcatgtcatgtggtattgttgatgcacttggtagtatatatctctccctgtgctcatcaaggatcaaatcagtttgttccttattgatattcaacattttacattcagcaagtgcaatgacattcacctgcgatgatgatgcatggcttgctcttaccatgaaggtactcatgttcatgtattatatgagttcaatgatacactgccagttggagcttatttcatccgtagatatgctagtctctcctggttaccaacagctttatagagagtgactatcctataaattcatttcagattacaatcttccattcttcttcccattgctctgaaaggagatttcttgtcttttgttttatgaacataagttaggagttagtattaccaagtcataggggttccacaaaataaaaccttaggcaaatgctgatatcaaaaaaattgaaatgcagaagagtaattagagtagccattttcctttgcccctgttggatcaagcctagtggcttgcagttgcttcctttgtccttccagttcattttcatgaacattacaaaaaaaatgggtgcaattttaattggtaccacattttcttttgttccctaattagaatttagaatttgtctaatttactaacaactgtctgtgcagctattggattgtttcaattctagtcttgcttatacatcaaatgagcaagaatggaagatattaattgggatattgtgccttattttaaaccattcagcaaacaaggtgcttattgagcctgcaaaagccataatcttgaataattgtttggttttgttgatggatggtatagttcaagaagcttgtgcaaagggcccatctttatttcaacacaatcaggagacaacctttggggaattattgattcttatgcttttattgatatttttctctctacgaaggtatgaagctgtattgcttgcttcatttaattgcttgtgtatgagctaatgatagtctcttttcttttccagcctgcaagcgatcttagaggcaagcattgactggcaggaattcctgcaatattcagatgacactgagtcttcctctgttcttggcattccgtgccatgatttgtgtcgtctcatgcactttggcccttctcccgtaaagcttattgcttcacaatgcctgttggaattgcttaacagaatttcagatcagaggagctgtcttaatgctgagttaagatgctctgcaaagtatctgaagtccattattgcagtgacagagggaatggtcttcgatcaagatagtagagttgctgaaaattgtggtgcctgtctcacggtgattttaggttgggagagatttggaagcagagagaaggcggtgatcagagaatctaaatggtctaggttaatattggaggaatttgcagttgccttgactgctcctggtttgacatccaaatccttcagtaatcagcagaagattgcagcaaatatagctctttcattgctccaactgagccaagtaccagattggttgacatcgttgttcagtgattctttgatatctggtatagttgctaatctttctgctaggaatgttaccgcggaaattgtcactctcttcagtgaacttatggccaaaaactatctcaatcaagaacacattgctggtctacacaacttgttccaggttcgtactgctgtcctttatatatacaaatcagagtaatgcgtacatgtagttttgcaagacgccatatataaacaattcttgatatctgattgcaatttatcccattagttgttctgtggtctacaccctccagtctcaggggtttctccttagttcatatgatataattggaagcaagcaaagtttctttttttttcccctctctcttggatatggggtggttccctcattcctcgtacttcaaacttaatcgcaagaaaatgcttcctgttgtgtttaaaaaagaactaaaaaaatagctgcatttcttgcttagtacgagaggaccaagtaacatccacatctctcttcttaaaaaatatggaaatggtttacatctcgaccctctgtcatcacgcagagccaattatcatcacatgctccctgaagtgacgatttccgcgtatcctgatgcaggtctgcaggagacaggcctatgagggaggcggcggctcgaaggcgcagccctcggagcagaaggctgcggcggcgagatgcgccgacgacgtgcgtgctttgctcttcggcatgatgctggagcagcgggcgtgctctcgcgccaccgttgagatggagcagcagagacttctccgtgagatcgactctttcttcttccaggagtcgagcctgcgagaacagaacagcgtgaagtaacccaagtctcaaggtcttaaggccagcccccggccaacaaaccaggcacctcgtacagctcccccctaatccgtatagtttttttttttttttgacattcctaatctgtatagatgcttataagtaattagggatactcacatcttccttgttgatagtgtttaaagggcgcaaaaattaatttgcccctcaatcatgaaaattgttgaagctccatgccaaaattggtctgcaaaagcaacccttaaacgaaatggaatacaccaatctttcg
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| CDS seq | atggaatccgacggcgaggacacgccgccgccggcggcggcgcgggcgtgcggcgcgggccaccgcgcgtcgcactcgctgccgacctcggcggggggccgcgtctgcctctcctgcgccgcggcgctgctctcctcggccgcctccgcgccgtcgcaccacgtctcccacgcgctcgccgccctctccctggcgctcgccgacccggccttcctcgccccgctccgcgccgcgcacccgcgcctcctcgccgcgcccctcgccgaggcgctcgccgccgccgccgcccgccgcgacgccgcgctcgccgcccaggcgtccgacctcgccgccgacctcgccgccgccgtgggcgcccccgcggcctccgacctcgtcgcccgcgtcgcccgcgccctctcctccggctccctcgtcaagcacctccacacgggtgcagtggaggatggagtatttgagtgtttgaccaatatttcactggcatatggcgttgcaaacgacattaatctgacagtacagctacactgtttggggatcctgctaaattctaccaaagatgctgcagcttacattggagataaacaatctctttacttaaaccttgtcaacaatctccggctaccaaggttaataccattgcatattgacactttcctcgccttgcgaataaccttatctgacagcatcattaacttgttctggtacagcgatgaaattcgtggagagatactctttgtactatacaaactctcactgttaaacgccaccccatgggatgacatatgtgataatgacaatgtggatctttcagcgattggaagaagcttgcttcaattttctcttgaagtcctactcaaaacccaaaatgatgatgttcgcctgaactgtgttgcattgctccttactttagcaaagaagggggcctttgacattttactgcttagtgatccgagtttaatcaattctgctgaagcagaagataatgtgccactaaatgattctctcataattctgtttgctgatgctgtcaaaggatctctgctatctactaatatagaagtgcaaacagggacattggaattgatcttccatttcctgtcatctgatgcaaatatatttgttctgaaaacattgatagatcagaatgttgctgattatgtatttgaggttctcaggttatcaggtatgaggaaccatcttctgcagtcatcaaatgtctcacagtttctaaccaagctgttatatgtttcaggaaataatgatccactggtcatttcctctattcaagtactatccattttagccaattcagaggagagattcaaggaaaagcttgccattgcagtttctactttacttcctgttcttcactatgtttcagagataccatttcacccagtccaatctcaagttttacgacttgtttgcattagcatagttaattgttctggcattttgtcgctgtcccaagaagaacagatagcctgtactttgtcagcaattttgagaagacatggaaatggtgaacttggcatgagttctgaaacctttgctctggtttgctcaatgcttgtagatattctgaagttaccatctgctgatgacatccaaaaactgccatcattcattgtagaagcatcaaaacatgcaatctctttgacattctctcacgagtatgattgtttgttcctcacaccacattcccttcttcttctaaaagaagcacttatattctgccttgaagggaataaagatcagattcttcgcaagaaggttctggaggatagcatcattgaaacctgtgaaacatatttacttccttggcttgaaagtgctattgttgatggtaatgatgaagaaacattgtccggcatccttcagattttccaaattattttatcaagggcatctgataacaaatcatttaagtttgctgagatgcttgcctcatcatcatggtttagcttgtcatttggattcatgggcttatttcctactgaccatgtaaaatcagcagtatatttggtcatcagttcaattgttgacaaagttttgggcatcagttatggggaaacaattagagatgcatgcatttatcttccacctgaccctgcagagctgatgtatttacttgggcaatgtagctcggaagacttcaacttggcatcatgccaatgtgcaattcttgttatattatatgtttgttcattctacaatgaaaggctggctgctgacaatcaaattctggcttcagtcgagcaatacattcttctcaatggtgcgaagttcccccatgaaatcccaggctctctgatgcttactcttctggttcatctttatgcctttgtcagaggcatttcatttagatttggcattccacatagtccagaagctgagaaaacactgttccatgcaatggcacacaaggagtgggacttgcttcttatccgagtccatctgatagcgctaaaatggctcttccagaatgaagaacttatggaaccactctcctttcatttgctgaatttctgtaaaattttctgtgaggaccgaattgtcacgctttcaagcagcactcaattggtggacatacaaatgattgcagaactggtatattctggggaaacctgcatctcgtctttgctggtatccttattgagtcagatgataaaggagagcgcagaagatgaggtcctctcagtagttaatgttattactgaaattctagtaacttttccttgtacttctgatcagttcatgtcatgtggtattgttgatgcacttggtagtatatatctctccctgtgctcatcaaggatcaaatcagtttgttccttattgatattcaacattttacattcagcaagtgcaatgacattcacctgcgatgatgatgcatggcttgctcttaccatgaagctattggattgtttcaattctagtcttgcttatacatcaaatgagcaagaatggaagatattaattgggatattgtgccttattttaaaccattcagcaaacaaggtgcttattgagcctgcaaaagccataatcttgaataattgtttggttttgttgatggatggtatagttcaagaagcttgtgcaaagggcccatctttatttcaacacaatcaggagacaacctttggggaattattgattcttatgcttttattgatatttttctctctacgaagcctgcaagcgatcttagaggcaagcattgactggcaggaattcctgcaatattcagatgacactgagtcttcctctgttcttggcattccgtgccatgatttgtgtcgtctcatgcactttggcccttctcccgtaaagcttattgcttcacaatgcctgttggaattgcttaacagaatttcagatcagaggagctgtcttaatgctgagttaagatgctctgcaaagtatctgaagtccattattgcagtgacagagggaatggtcttcgatcaagatagtagagttgctgaaaattgtggtgcctgtctcacggtgattttaggttgggagagatttggaagcagagagaaggcggtgatcagagaatctaaatggtctaggttaatattggaggaatttgcagttgccttgactgctcctggtttgacatccaaatccttcagtaatcagcagaagattgcagcaaatatagctctttcattgctccaactgagccaagtaccagattggttgacatcgttgttcagtgattctttgatatctggtatagttgctaatctttctgctaggaatgttaccgcggaaattgtcactctcttcagtgaacttatggccaaaaactatctcaatcaagaacacattgctggtctacacaacttgttccaggtctgcaggagacaggcctatgagggaggcggcggctcgaaggcgcagccctcggagcagaaggctgcggcggcgagatgcgccgacgacgtgcgtgctttgctcttcggcatgatgctggagcagcgggcgtgctctcgcgccaccgttgagatggagcagcagagacttctccgtgagatcgactctttcttcttccaggagtcgagcctgcgagaacagaacagcgtgaagtaa
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| Protein seq | MESDGEDTPPPAAARACGAGHRASHSLPTSAGGRVCLSCAAALLSSAASAPSHHVSHALAALSLALADPAFLAPLRAAHPRLLAAPLAEALAAAAARRDAALAAQASDLAADLAAAVGAPAASDLVARVARALSSGSLVKHLHTGAVEDGVFECLTNISLAYGVANDINLTVQLHCLGILLNSTKDAAAYIGDKQSLYLNLVNNLRLPRLIPLHIDTFLALRITLSDSIINLFWYSDEIRGEILFVLYKLSLLNATPWDDICDNDNVDLSAIGRSLLQFSLEVLLKTQNDDVRLNCVALLLTLAKKGAFDILLLSDPSLINSAEAEDNVPLNDSLIILFADAVKGSLLSTNIEVQTGTLELIFHFLSSDANIFVLKTLIDQNVADYVFEVLRLSGMRNHLLQSSNVSQFLTKLLYVSGNNDPLVISSIQVLSILANSEERFKEKLAIAVSTLLPVLHYVSEIPFHPVQSQVLRLVCISIVNCSGILSLSQEEQIACTLSAILRRHGNGELGMSSETFALVCSMLVDILKLPSADDIQKLPSFIVEASKHAISLTFSHEYDCLFLTPHSLLLLKEALIFCLEGNKDQILRKKVLEDSIIETCETYLLPWLESAIVDGNDEETLSGILQIFQIILSRASDNKSFKFAEMLASSSWFSLSFGFMGLFPTDHVKSAVYLVISSIVDKVLGISYGETIRDACIYLPPDPAELMYLLGQCSSEDFNLASCQCAILVILYVCSFYNERLAADNQILASVEQYILLNGAKFPHEIPGSLMLTLLVHLYAFVRGISFRFGIPHSPEAEKTLFHAMAHKEWDLLLIRVHLIALKWLFQNEELMEPLSFHLLNFCKIFCEDRIVTLSSSTQLVDIQMIAELVYSGETCISSLLVSLLSQMIKESAEDEVLSVVNVITEILVTFPCTSDQFMSCGIVDALGSIYLSLCSSRIKSVCSLLIFNILHSASAMTFTCDDDAWLALTMKLLDCFNSSLAYTSNEQEWKILIGILCLILNHSANKVLIEPAKAIILNNCLVLLMDGIVQEACAKGPSLFQHNQETTFGELLILMLLLIFFSLRSLQAILEASIDWQEFLQYSDDTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLNRISDQRSCLNAELRCSAKYLKSIIAVTEGMVFDQDSRVAENCGACLTVILGWERFGSREKAVIRESKWSRLILEEFAVALTAPGLTSKSFSNQQKIAANIALSLLQLSQVPDWLTSLFSDSLISGIVANLSARNVTAEIVTLFSELMAKNYLNQEHIAGLHNLFQVCRRQAYEGGGGSKAQPSEQKAAAARCADDVRALLFGMMLEQRACSRATVEMEQQRLLREIDSFFFQESSLREQNSVK |
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| Function | Protein PUTATIVE RECOMBINATION INITIATION DEFECT 1 [UniProtKB/Swiss-Prot:O23277] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0009590 | OsCMeo_04g0009590.01 | Chr04 | 16139643 | 16146824 | + | NAM | ||
| CDS seq | atggaatccgacggcgaggacacgccgccgccggcggcggcgcgggcgtgcggcgcgggccaccgcgcgtcgcactcgctgccgacctcggcggggggccgcgtctgcctctcctgcgccgcggcgctgctctcctcggccgcctccgcgccgtcgcaccacgtctcccacgcgctcgccgccctctccctggcgctcgccgacccggccttcctcgccccgctccgcgccgcgcacccgcgcctcctcgccgcgcccctcgccgaggcgctcgccgccgccgccgcccgccgcgacgccgcgctcgccgcccaggcgtccgacctcgccgccgacctcgccgccgccgtgggcgcccccgcggcctccgacctcgtcgcccgcgtcgcccgcgccctctcctccggctccctcgtcaagcacctccacacgggtgcagtggaggatggagtatttgagtgtttgaccaatatttcactggcatatggcgttgcaaacgacattaatctgacagtacagctacactgtttggggatcctgctaaattctaccaaagatgctgcagcttacattggagataaacaatctctttacttaaaccttgtcaacaatctccggctaccaagcgatgaaattcgtggagagatactctttgtactatacaaactctcactgttaaacgccaccccatgggatgacatatgtgataatgacaatgtggatctttcagcgattggaagaagcttgcttcaattttctcttgaagtcctactcaaaacccaaaatgatgatgttcgcctgaactgtgttgcattgctccttactttagcaaagaagggggcctttgacattttactgcttagtgatccgagtttaatcaattctgctgaagcagaagataatgtgccactaaatgattctctcataattctgtttgctgatgctgtcaaaggatctctgctatctactaatatagaagtgcaaacagggacattggaattgatcttccatttcctgtcatctgatgcaaatatatttgttctgaaaacattgatagatcagaatgttgctgattatgtatttgaggttctcaggttatcaggtatgaggaaccatcttctgcagtcatcaaatgtctcacagtttctaaccaagctgttatatgtttcaggaaataatgatccactggtcatttcctctattcaagtactatccattttagccaattcagaggagagattcaaggaaaagcttgccattgcagtttctactttacttcctgttcttcactatgtttcagagataccatttcacccagtccaatctcaagttttacgacttgtttgcattagcatagttaattgttctggcattttgtcgctgtcccaagaagaacagatagcctgtactttgtcagcaattttgagaagacatggaaatggtgaacttggcatgagttctgaaacctttgctctggtttgctcaatgcttgtagatattctgaagttaccatctgctgatgacatccaaaaactgccatcattcattgtagaagcatcaaaacatgcaatctctttgacattctctcacgagtatgattgtttgttcctcacaccacattcccttcttcttctaaaagaagcacttatattctgccttgaagggaataaagatcagattcttcgcaagaaggttctggaggatagcatcattgaaacctgtgaaacatatttacttccttggcttgaaagtgctattgttgatggtaatgatgaagaaacattgtccggcatccttcagattttccaaattattttatcaagggcatctgataacaaatcatttaagtttgctgagatgcttgcctcatcatcatggtttagcttgtcatttggattcatgggcttatttcctactgaccatgtaaaatcagcagtatatttggtcatcagttcaattgttgacaaagttttgggcatcagttatggggaaacaattagagatgcatgcatttatcttccacctgaccctgcagagctgatgtatttacttgggcaatgtagctcggaagacttcaacttggcatcatgccaatgtgcaattcttgttatattatatgtttgttcattctacaatgaaaggctggctgctgacaatcaaattctggcttcagtcgagcaatacattcttctcaatggtgcgaagttcccccatgaaatcccaggctctctgatgcttactcttctggttcatctttatgcctttgtcagaggcatttcatttagatttggcattccacatagtccagaagctgagaaaacactgttccatgcaatggcacacaaggagtgggacttgcttcttatccgagtccatctgatagcgctaaaatggctcttccagaatgaagaacttatggaaccactctcctttcatttgctgaatttctgtaaaattttctgtgaggaccgaattgtcacgctttcaagcagcactcaattggtggacatacaaatgattgcagaactggtatattctggggaaacctgcatctcgtctttgctggtatccttattgagtcagatgataaaggagagcgcagaagatgaggtcctctcagtagttaatgttattactgaaattctagtaacttttccttgtacttctgatcagttcatgtcatgtggtattgttgatgcacttggtagtatatatctctccctgtgctcatcaaggatcaaatcagtttgttccttattgatattcaacattttacattcagcaagtgcaatgacattcacctgcgatgatgatgcatggcttgctcttaccatgaagctattggattgtttcaattctagtcttgcttatacatcaaatgagcaagaatggaagatattaattgggatattgtgccttattttaaaccattcagcaaacaaggtgcttattgagcctgcaaaagccataatcttgaataattgtttggttttgttgatggatggtatagttcaagaagcttgtgcaaagggcccatctttatttcaacacaatcaggagacaacctttggggaattattgattcttatgcttttattgatatttttctctctacgaagcctgcaagcgatcttagaggcaagcattgactggcaggaattcctgcaatattcagatgacactgagtcttcctctgttcttggcattccgtgccatgatttgtgtcgtctcatgcactttggcccttctcccgtaaagcttattgcttcacaatgcctgttggaattgcttaacagaatttcagatcagaggagctgtcttaatgctgagttaagatgctctgcaaagtatctgaagtccattattgcagtgacagagggaatggtcttcgatcaagatagtagagttgctgaaaattgtggtgcctgtctcacggtgattttaggttgggagagatttggaagcagagagaaggcggtgatcagagaatctaaatggtctaggttaatattggaggaatttgcagttgccttgactgctcctggtttgacatccaaatccttcagtaatcagcagaagattgcagcaaatatagctctttcattgctccaactgagccaagtaccagattggttgacatcgttgttcagtgattctttgatatctggtatagttgctaatctttctgctaggaatgttaccgcggaaattgtcactctcttcagtgaacttatggccaaaaactatctcaatcaagaacacattgctggtctacacaacttgttccaggtctgcaggagacaggcctatgagggaggcggcggctcgaaggcgcagccctcggagcagaaggctgcggcggcgagatgcgccgacgacgtgcgtgctttgctcttcggcatgatgctggagcagcgggcgtgctctcgcgccaccgttgagatggagcagcagagacttctccgtgagatcgactctttcttcttccaggagtcgagcctgcgagaacagaacagcgtgaagtaa
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| Protein seq | MESDGEDTPPPAAARACGAGHRASHSLPTSAGGRVCLSCAAALLSSAASAPSHHVSHALAALSLALADPAFLAPLRAAHPRLLAAPLAEALAAAAARRDAALAAQASDLAADLAAAVGAPAASDLVARVARALSSGSLVKHLHTGAVEDGVFECLTNISLAYGVANDINLTVQLHCLGILLNSTKDAAAYIGDKQSLYLNLVNNLRLPSDEIRGEILFVLYKLSLLNATPWDDICDNDNVDLSAIGRSLLQFSLEVLLKTQNDDVRLNCVALLLTLAKKGAFDILLLSDPSLINSAEAEDNVPLNDSLIILFADAVKGSLLSTNIEVQTGTLELIFHFLSSDANIFVLKTLIDQNVADYVFEVLRLSGMRNHLLQSSNVSQFLTKLLYVSGNNDPLVISSIQVLSILANSEERFKEKLAIAVSTLLPVLHYVSEIPFHPVQSQVLRLVCISIVNCSGILSLSQEEQIACTLSAILRRHGNGELGMSSETFALVCSMLVDILKLPSADDIQKLPSFIVEASKHAISLTFSHEYDCLFLTPHSLLLLKEALIFCLEGNKDQILRKKVLEDSIIETCETYLLPWLESAIVDGNDEETLSGILQIFQIILSRASDNKSFKFAEMLASSSWFSLSFGFMGLFPTDHVKSAVYLVISSIVDKVLGISYGETIRDACIYLPPDPAELMYLLGQCSSEDFNLASCQCAILVILYVCSFYNERLAADNQILASVEQYILLNGAKFPHEIPGSLMLTLLVHLYAFVRGISFRFGIPHSPEAEKTLFHAMAHKEWDLLLIRVHLIALKWLFQNEELMEPLSFHLLNFCKIFCEDRIVTLSSSTQLVDIQMIAELVYSGETCISSLLVSLLSQMIKESAEDEVLSVVNVITEILVTFPCTSDQFMSCGIVDALGSIYLSLCSSRIKSVCSLLIFNILHSASAMTFTCDDDAWLALTMKLLDCFNSSLAYTSNEQEWKILIGILCLILNHSANKVLIEPAKAIILNNCLVLLMDGIVQEACAKGPSLFQHNQETTFGELLILMLLLIFFSLRSLQAILEASIDWQEFLQYSDDTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLNRISDQRSCLNAELRCSAKYLKSIIAVTEGMVFDQDSRVAENCGACLTVILGWERFGSREKAVIRESKWSRLILEEFAVALTAPGLTSKSFSNQQKIAANIALSLLQLSQVPDWLTSLFSDSLISGIVANLSARNVTAEIVTLFSELMAKNYLNQEHIAGLHNLFQVCRRQAYEGGGGSKAQPSEQKAAAARCADDVRALLFGMMLEQRACSRATVEMEQQRLLREIDSFFFQESSLREQNSVK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0009590 | OsCMeo_04g0009590.02 | Chr04 | 16139643 | 16146764 | + | NAM | ||
| CDS seq | atggaatccgacggcgaggacacgccgccgccggcggcggcgcgggcgtgcggcgcgggccaccgcgcgtcgcactcgctgccgacctcggcggggggccgcgtctgcctctcctgcgccgcggcgctgctctcctcggccgcctccgcgccgtcgcaccacgtctcccacgcgctcgccgccctctccctggcgctcgccgacccggccttcctcgccccgctccgcgccgcgcacccgcgcctcctcgccgcgcccctcgccgaggcgctcgccgccgccgccgcccgccgcgacgccgcgctcgccgcccaggcgtccgacctcgccgccgacctcgccgccgccgtgggcgcccccgcggcctccgacctcgtcgcccgcgtcgcccgcgccctctcctccggctccctcgtcaagcacctccacacgggtgcagtggaggatggagtatttgagtgtttgaccaatatttcactggcatatggcgttgcaaacgacattaatctgacagtacagctacactgtttggggatcctgctaaattctaccaaagatgctgcagcttacattggagataaacaatctctttacttaaaccttgtcaacaatctccggctaccaaggttaataccattgcatattgacactttcctcgccttgcgaataaccttatctgacagcatcattaacttgttctggtacagcgatgaaattcgtggagagatactctttgtactatacaaactctcactgttaaacgccaccccatgggatgacatatgtgataatgacaatgtggatctttcagcgattggaagaagcttgcttcaattttctcttgaagtcctactcaaaacccaaaatgatgatgttcgcctgaactgtgttgcattgctccttactttagcaaagaagggggcctttgacattttactgcttagtgatccgagtttaatcaattctgctgaagcagaagataatgtgccactaaatgattctctcataattctgtttgctgatgctgtcaaaggatctctgctatctactaatatagaagtgcaaacagggacattggaattgatcttccatttcctgtcatctgatgcaaatatatttgttctgaaaacattgatagatcagaatgttgctgattatgtatttgaggttctcaggttatcaggtatgaggaaccatcttctgcagtcatcaaatgtctcacagtttctaaccaagctgttatatgtttcaggaaataatgatccactggtcatttcctctattcaagtactatccattttagccaattcagaggagagattcaaggaaaagcttgccattgcagtttctactttacttcctgttcttcactatgtttcagagataccatttcacccagtccaatctcaagttttacgacttgtttgcattagcatagttaattgttctggcattttgtcgctgtcccaagaagaacagatagcctgtactttgtcagcaattttgagaagacatggaaatggtgaacttggcatgagttctgaaacctttgctctggtttgctcaatgcttgtagatattctgaagttaccatctgctgatgacatccaaaaactgccatcattcattgtagaagcatcaaaacatgcaatctctttgacattctctcacgagtatgattgtttgttcctcacaccacattcccttcttcttctaaaagaagcacttatattctgccttgaagggaataaagatcagattcttcgcaagaaggttctggaggatagcatcattgaaacctgtgaaacatatttacttccttggcttgaaagtgctattgttgatggtaatgatgaagaaacattgtccggcatccttcagattttccaaattattttatcaagggcatctgataacaaatcatttaagtttgctgagatgcttgcctcatcatcatggtttagcttgtcatttggattcatgggcttatttcctactgaccatgtaaaatcagcagtatatttggtcatcagttcaattgttgacaaagttttgggcatcagttatggggaaacaattagagatgcatgcatttatcttccacctgaccctgcagagctgatgtatttacttgggcaatgtagctcggaagacttcaacttggcatcatgccaatgtgcaattcttgttatattatatgtttgttcattctacaatgaaaggctggctgctgacaatcaaattctggcttcagtcgagcaatacattcttctcaatggtgcgaagttcccccatgaaatcccaggctctctgatgcttactcttctggttcatctttatgcctttgtcagaggcatttcatttagatttggcattccacatagtccagaagctgagaaaacactgttccatgcaatggcacacaaggagtgggacttgcttcttatccgagtccatctgatagcgctaaaatggctcttccagaatgaagaacttatggaaccactctcctttcatttgctgaatttctgtaaaattttctgtgaggaccgaattgtcacgctttcaagcagcactcaattggtggacatacaaatgattgcagaactggtatattctggggaaacctgcatctcgtctttgctggtatccttattgagtcagatgataaaggagagcgcagaagatgaggtcctctcagtagttaatgttattactgaaattctagtaacttttccttgtacttctgatcagttcatgtcatgtggtattgttgatgcacttggtagtatatatctctccctgtgctcatcaaggatcaaatcagtttgttccttattgatattcaacattttacattcagcaagtgcaatgacattcacctgcgatgatgatgcatggcttgctcttaccatgaagctattggattgtttcaattctagtcttgcttatacatcaaatgagcaagaatggaagatattaattgggatattgtgccttattttaaaccattcagcaaacaaggtgcttattgagcctgcaaaagccataatcttgaataattgtttggttttgttgatggatggtatagttcaagaagcttgtgcaaagggcccatctttatttcaacacaatcaggagacaacctttggggaattattgattcttatgcttttattgatatttttctctctacgaagcctgcaagcgatcttagaggcaagcattgactggcaggaattcctgcaatattcagatgacactgagtcttcctctgttcttggcattccgtgccatgatttgtgtcgtctcatgcactttggcccttctcccgtaaagcttattgcttcacaatgcctgttggaattgcttaacagaatttcagatcagaggagctgtcttaatgctgagttaagatgctctgcaaagtatctgaagtccattattgcagtgacagagggaatggtcttcgatcaagatagtagagttgctgaaaattgtggtgcctgtctcacggtgattttaggttgggagagatttggaagcagagagaaggcggtgatcagagaatctaaatggtctaggttaatattggaggaatttgcagttgccttgactgctcctggtttgacatccaaatccttcagtaatcagcagaagattgcagcaaatatagctctttcattgctccaactgagccaagtaccagattggttgacatcgttgttcagtgattctttgatatctggtatagttgctaatctttctgctaggaatgttaccgcggaaattgtcactctcttcagtgaacttatggccaaaaactatctcaatcaagaacacattgctggtctacacaacttgttccaggtctgcaggagacaggcctatgagggaggcggcggctcgaaggcgcagccctcggagcagaaggctgcggcggcgagatgcgccgacgacgtgcgtgctttgctcttcggcatgatgctggagcagcgggcgtgctctcgcgccaccgttgagatggagcagcagagacttctccgtgagatcgactctttcttcttccaggagtcgagcctgcgagaacagaacagcgtgaagtaa
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| Protein seq | MESDGEDTPPPAAARACGAGHRASHSLPTSAGGRVCLSCAAALLSSAASAPSHHVSHALAALSLALADPAFLAPLRAAHPRLLAAPLAEALAAAAARRDAALAAQASDLAADLAAAVGAPAASDLVARVARALSSGSLVKHLHTGAVEDGVFECLTNISLAYGVANDINLTVQLHCLGILLNSTKDAAAYIGDKQSLYLNLVNNLRLPRLIPLHIDTFLALRITLSDSIINLFWYSDEIRGEILFVLYKLSLLNATPWDDICDNDNVDLSAIGRSLLQFSLEVLLKTQNDDVRLNCVALLLTLAKKGAFDILLLSDPSLINSAEAEDNVPLNDSLIILFADAVKGSLLSTNIEVQTGTLELIFHFLSSDANIFVLKTLIDQNVADYVFEVLRLSGMRNHLLQSSNVSQFLTKLLYVSGNNDPLVISSIQVLSILANSEERFKEKLAIAVSTLLPVLHYVSEIPFHPVQSQVLRLVCISIVNCSGILSLSQEEQIACTLSAILRRHGNGELGMSSETFALVCSMLVDILKLPSADDIQKLPSFIVEASKHAISLTFSHEYDCLFLTPHSLLLLKEALIFCLEGNKDQILRKKVLEDSIIETCETYLLPWLESAIVDGNDEETLSGILQIFQIILSRASDNKSFKFAEMLASSSWFSLSFGFMGLFPTDHVKSAVYLVISSIVDKVLGISYGETIRDACIYLPPDPAELMYLLGQCSSEDFNLASCQCAILVILYVCSFYNERLAADNQILASVEQYILLNGAKFPHEIPGSLMLTLLVHLYAFVRGISFRFGIPHSPEAEKTLFHAMAHKEWDLLLIRVHLIALKWLFQNEELMEPLSFHLLNFCKIFCEDRIVTLSSSTQLVDIQMIAELVYSGETCISSLLVSLLSQMIKESAEDEVLSVVNVITEILVTFPCTSDQFMSCGIVDALGSIYLSLCSSRIKSVCSLLIFNILHSASAMTFTCDDDAWLALTMKLLDCFNSSLAYTSNEQEWKILIGILCLILNHSANKVLIEPAKAIILNNCLVLLMDGIVQEACAKGPSLFQHNQETTFGELLILMLLLIFFSLRSLQAILEASIDWQEFLQYSDDTESSSVLGIPCHDLCRLMHFGPSPVKLIASQCLLELLNRISDQRSCLNAELRCSAKYLKSIIAVTEGMVFDQDSRVAENCGACLTVILGWERFGSREKAVIRESKWSRLILEEFAVALTAPGLTSKSFSNQQKIAANIALSLLQLSQVPDWLTSLFSDSLISGIVANLSARNVTAEIVTLFSELMAKNYLNQEHIAGLHNLFQVCRRQAYEGGGGSKAQPSEQKAAAARCADDVRALLFGMMLEQRACSRATVEMEQQRLLREIDSFFFQESSLREQNSVK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr04 | 16141015 | 16141392 | + | OsCMeo_04g0009590.02 | OsCMeo_04g0009590.02,OsCMeo_04g0009590.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.828452 | 0.515958 | 2.299437 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0347800 | RBH | 0.163416 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g28020 | RBH | 0.106244 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0347700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0009010 | RBH | 0.157488 | 0.621537 | 0.750578 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0009810 | RBH | 0.096421 | 0.486988 | 0.765760 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0009260 | RBH | 0.096076 | 0.014362 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0009370 | RBH | 1.383307 | 0.0 | 2.419454 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0263800 | RBH | 0.634803 | 1.6603825 | 0.7859705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0008480 | RBH | 0.068751 | 0.048403 | 0.461060 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0260100 | RBH | 0.74441 | 2.2769155 | 3.3901235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0009010 | RBH | 0.055982 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008680 | RBH | 0.000000 | 2.862184 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008730 | RBH | 1.968018 | 7.715300 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0018050 | RBH | 0.093233 | 0.0 | 0.082073 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0009390 | RBH | 0.076035 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008520 | RBH | 0.235117 | 0.988578 | 0.177377 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008610 | RBH | 0.715984 | 2.974461 | 1.364429 |
