Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0008510 | OGI:04049320 | 14/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:14651337-14654933 | ||||||||
| Gene Symbol | SPT16, Osspt16 | ||||||||||
| DNA seq | ctaacatagcacccgtttgtcgagagaacggaacggagctataagacgcaactgacagaaatacacaactgaggctgcagcattgccatctgcacaagatacgtccgccaacataaatattatacattctggaggtcaacattctacccaggaaacaaaacattacatcaatgaggatacaactaatgaatcaacttgggtttcccctagatggcaagagtctttacagttcatttcatcaactatggagttcaccaaagtccgaccgccctttcagctaactgcagtacgctactacggaaacaaagtgtcgtaatgatctagagaaacagctaggagcgcttctgcttacagccaagcacaccatgcccctcaaaaagggcgcgcattcaggaagcagccaggcctggcgaagcaccgttagatttacctgaacttcggcttctttgagggtcctcccttgaagctgctgcgctccggtggtggacgggacttgctgaaggtcttcaccttgcgccgcctcctctcttcttcgctgtccgactccgcaccattctccctgtctgcattgcttgcctcccgttccagctcctcccaggtcttacccttctcttcctcagagtcttcttcagaatcgtcctcatcatcctcatctgattccaccaaggactcgctgtcagaatcttcatcttctgattcagactcaggctcagcatcagaaggctcgtagccctgatcagattcctctgtttcctctgtttctgaatcacttgcttccatattcaagaattcccagccaccgtcatcaatgaatttctgaggatcatcgatgatagttttcagaataggacgccagttaaggttcagcctgctctcatagtacttgaggtcagtcgtgtcaagccactcctttattgcatcaagtgatgttgatggtatggaatcaatgcgaagaacatccttcttgaaatccttgaacacgatagccatgtcaaagttctttgtcccaaagcccaccctctccaaattaacaatctctatctcactcagggtcaccaccaggaagggtgtctctattagttcaaccaaacaagtcgaagttggaatgatgaaagctgaagctttatatggaacaccatggaatccaagctctctaagagggacatcaaactcaagatccagccccttgaattgtggctgcgaccagtgatcattaaccttgttcacaaagttctggaaatccatgtttattctattctttcggtccctctcacgctgctcttcttcaatttcatcaggatcaagagctgatctcctattcccaccaagagtctgaacaacatccatcacctcaacataaaattgaacatcctttgtcttcttgtttccaaccataatatgattgtgcaaatggaaatgaaggagtgtaatcatttctttttctgctggctggaagaaggcatgctttacattcccatacatgatatccacacgctcatcagcccttgaagtagaatatctaaaaccattgacatgggactcaagagttcctgtaagcttccgcccacgtccaccaaatgcaggccttatccacacatcagaaagtctcactggcttgtttctgttgcttgtcaactggagtttctcctgagtaacaagggtggctctttcagctctctctgactcccttgaagcaacttgccgcctcaacgttttgatttgctgaacaacttcactgctatgtcgtggatctttcgagcggaacgtgatctccttcaagtagatagccccttgcgacttcagattgctatcgtttgagaatggcatgccaggcacattgaagaagatgcggatagtgcaagtgcggttgtcttggtgacttgtgacactcttaacagtagaaacatggaaaggaaccatgctgccataaataggtaagaggacagcttcattcttctgatctacttgtatgaccaactctcttgcatatggaacatcattaacattcttatatgcaacaagctcatttgatgaccttgagggaccacgcccatcaccagaaccagagccaaccccagcaagccttctagcagtctcttcattcttttgacgagcaagttcagcctggtgttgtctccggagctcttccttggacatctcctggttgtctgacctaagtgtggcctttgttggtggcaatgcctcctttgcattaacctccacctttttgacaggaagaacttcatcctcgtcattaaacgaataagcaacatccttaacaagcttggagcatgatgctgttaagttctccaatggcactaaacatgtatcagccaacaaaagagagtattgttttgtcttctcactctttttttctgcttgaagattatgcaaaccaagggagacattgaaaaccattcctgcttttatgatacggtcattcttgggattcaagtttaagccagactctcggaattcaagaccaattcctgtaccagcagacttcgttagattacgaagtagttcaggggcattcttctcaataacgtcaactgcagcctgataaaccgcactcatccgattccctggcttcaatgcttctagagcagcttcatgagctttcataagagtttcatacgccttgatctgtgtaggagtagcatctatcagaaatgttctggccatattggagcaataatttccatatctggccccaattgcacatatgataacacttgcagagtcatagtaaagataatcatcattgcttgaggcacctggcttgaggtcaaacttccctccactttgaaatacaggaggatagcatatgtcaacattttcagccttcaacttcactttgaccttaagaggatcaagaatagccttttctgtctcatccatcaatgaagagtgtgtcactttcctctcttcatcaatcaccttctctagcttcggaaccacaaaatttttcattacagatgaggttaggtaggaggccttcttcacacatgtgatctctgaggtatccttcatagcaaaaagctcagagaagccattcgttatatctgtaagttgcacagatgagctagacaatttgtctgcccaagcttcaaggagcttaccctcaggtgcctcttttgcgatgtgaccaacaattgggtcatctgattttgactgagcacagacagcacgcactatgtcctccattaagccaacaccactgtcattcttagctttcacatgcaagacaatatcagcaccaacagcatcatttgcagccttcttgagggtgccaatgagatttgctttcttttgactgcataagaaatgtatttgcttgtgcatgaagacaattatggtttctggaaattcatatccaagtagccagacgtccagagctgacgacttcaaataacgaagatcttcagacgggggtggagtagcaattgcaatagcgttagaagaaccccatagatcagaattatgctctttccaatggtcatagaacaccttcagccgcttactgaagttatctaggttgattgtataagctccagatcccccaccacctggctttgcattaccattatccgccat
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| CDS seq | atggcggataatggtaatgcaaagccaggtggtgggggatctggagcttatacaatcaacctagataacttcagtaagcggctgaaggtgttctatgaccattggaaagagcataattctgatctatggggttcttctaacgctattgcaattgctactccacccccgtctgaagatcttcgttatttgaagtcgtcagctctggacgtctggctacttggatatgaatttccagaaaccataattgtcttcatgcacaagcaaatacatttcttatgcagtcaaaagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgatattgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtgcgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagaggcacctgagggtaagctccttgaagcttgggcagacaaattgtctagctcatctgtgcaacttacagatataacgaatggcttctctgagctttttgctatgaaggatacctcagagatcacatgtgtgaagaaggcctcctacctaacctcatctgtaatgaaaaattttgtggttccgaagctagagaaggtgattgatgaagagaggaaagtgacacactcttcattgatggatgagacagaaaaggctattcttgatcctcttaaggtcaaagtgaagttgaaggctgaaaatgttgacatatgctatcctcctgtatttcaaagtggagggaagtttgacctcaagccaggtgcctcaagcaatgatgattatctttactatgactctgcaagtgttatcatatgtgcaattggggccagatatggaaattattgctccaatatggccagaacatttctgatagatgctactcctacacagatcaaggcgtatgaaactcttatgaaagctcatgaagctgctctagaagcattgaagccagggaatcggatgagtgcggtttatcaggctgcagttgacgttattgagaagaatgcccctgaactacttcgtaatctaacgaagtctgctggtacaggaattggtcttgaattccgagagtctggcttaaacttgaatcccaagaatgaccgtatcataaaagcaggaatggttttcaatgtctcccttggtttgcataatcttcaagcagaaaaaaagagtgagaagacaaaacaatactctcttttgttggctgatacatgtttagtgccattggagaacttaacagcatcatgctccaagcttgttaaggatgttgcttattcgtttaatgacgaggatgaagttcttcctgtcaaaaaggtggaggttaatgcaaaggaggcattgccaccaacaaaggccacacttaggtcagacaaccaggagatgtccaaggaagagctccggagacaacaccaggctgaacttgctcgtcaaaagaatgaagagactgctagaaggcttgctggggttggctctggttctggtgatgggcgtggtccctcaaggtcatcaaatgagcttgttgcatataagaatgttaatgatgttccatatgcaagagagttggtcatacaagtagatcagaagaatgaagctgtcctcttacctatttatggcagcatggttcctttccatgtttctactgttaagagtgtcacaagtcaccaagacaaccgcacttgcactatccgcatcttcttcaatgtgcctggcatgccattctcaaacgatagcaatctgaagtcgcaaggggctatctacttgaaggagatcacgttccgctcgaaagatccacgacatagcagtgaagttgttcagcaaatcaaaacgttgaggcggcaagttgcttcaagggagtcagagagagctgaaagagccacccttgttactcaggagaaactccagttgacaagcaacagaaacaagccagtgagactttctgatgtgtggataaggcctgcatttggtggacgtgggcggaagcttacaggaactcttgagtcccatgtcaatggttttagatattctacttcaagggctgatgagcgtgtggatatcatgtatgggaatgtaaagcatgccttcttccagccagcagaaaaagaaatgattacactccttcatttccatttgcacaatcatattatggttggaaacaagaagacaaaggatgttcaattttatgttgaggtgatggatgttgttcagactcttggtgggaataggagatcagctcttgatcctgatgaaattgaagaagagcagcgtgagagggaccgaaagaatagaataaacatggatttccagaactttgtgaacaaggttaatgatcactggtcgcagccacaattcaaggggctggatcttgagtttgatgtccctcttagagagcttggattccatggtgttccatataaagcttcagctttcatcattccaacttcgacttgtttggttgaactaatagagacacccttcctggtggtgaccctgagtgagatagagattgttaatttggagagggtgggctttgggacaaagaactttgacatggctatcgtgttcaaggatttcaagaaggatgttcttcgcattgattccataccatcaacatcacttgatgcaataaaggagtggcttgacacgactgacctcaagtactatgagagcaggctgaaccttaactggcgtcctattctgaaaactatcatcgatgatcctcagaaattcattgatgacggtggctgggaattcttgaatatggaagcaaatggcaatgctgcagcctcagttgtgtatttctgtcagttgcgtcttatagctccgttccgttctctcgacaaacgggtgctatgttag
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| Protein seq | MADNGNAKPGGGGSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQKKANLIGTLKKAANDAVGADIVLHVKAKNDSGVGLMEDIVRAVCAQSKSDDPIVGHIAKEAPEGKLLEAWADKLSSSSVQLTDITNGFSELFAMKDTSEITCVKKASYLTSSVMKNFVVPKLEKVIDEERKVTHSSLMDETEKAILDPLKVKVKLKAENVDICYPPVFQSGGKFDLKPGASSNDDYLYYDSASVIICAIGARYGNYCSNMARTFLIDATPTQIKAYETLMKAHEAALEALKPGNRMSAVYQAAVDVIEKNAPELLRNLTKSAGTGIGLEFRESGLNLNPKNDRIIKAGMVFNVSLGLHNLQAEKKSEKTKQYSLLLADTCLVPLENLTASCSKLVKDVAYSFNDEDEVLPVKKVEVNAKEALPPTKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGSGSGDGRGPSRSSNELVAYKNVNDVPYARELVIQVDQKNEAVLLPIYGSMVPFHVSTVKSVTSHQDNRTCTIRIFFNVPGMPFSNDSNLKSQGAIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERAERATLVTQEKLQLTSNRNKPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEANGNAAASVVYFCQLRLIAPFRSLDKRVLC |
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| Function | FACT complex subunit SPT16 [UniProtKB/Swiss-Prot:Q7X923] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0008510 | OsCMeo_04g0008510.01 | Chr04 | 14651337 | 14654933 | - | NAM | ||
| CDS seq | atggcggataatggtaatgcaaagccaggtggtgggggatctggagcttatacaatcaacctagataacttcagtaagcggctgaaggtgttctatgaccattggaaagagcataattctgatctatggggttcttctaacgctattgcaattgctactccacccccgtctgaagatcttcgttatttgaagtcgtcagctctggacgtctggctacttggatatgaatttccagaaaccataattgtcttcatgcacaagcaaatacatttcttatgcagtcaaaagaaagcaaatctcattggcaccctcaagaaggctgcaaatgatgctgttggtgctgatattgtcttgcatgtgaaagctaagaatgacagtggtgttggcttaatggaggacatagtgcgtgctgtctgtgctcagtcaaaatcagatgacccaattgttggtcacatcgcaaaagaggcacctgagggtaagctccttgaagcttgggcagacaaattgtctagctcatctgtgcaacttacagatataacgaatggcttctctgagctttttgctatgaaggatacctcagagatcacatgtgtgaagaaggcctcctacctaacctcatctgtaatgaaaaattttgtggttccgaagctagagaaggtgattgatgaagagaggaaagtgacacactcttcattgatggatgagacagaaaaggctattcttgatcctcttaaggtcaaagtgaagttgaaggctgaaaatgttgacatatgctatcctcctgtatttcaaagtggagggaagtttgacctcaagccaggtgcctcaagcaatgatgattatctttactatgactctgcaagtgttatcatatgtgcaattggggccagatatggaaattattgctccaatatggccagaacatttctgatagatgctactcctacacagatcaaggcgtatgaaactcttatgaaagctcatgaagctgctctagaagcattgaagccagggaatcggatgagtgcggtttatcaggctgcagttgacgttattgagaagaatgcccctgaactacttcgtaatctaacgaagtctgctggtacaggaattggtcttgaattccgagagtctggcttaaacttgaatcccaagaatgaccgtatcataaaagcaggaatggttttcaatgtctcccttggtttgcataatcttcaagcagaaaaaaagagtgagaagacaaaacaatactctcttttgttggctgatacatgtttagtgccattggagaacttaacagcatcatgctccaagcttgttaaggatgttgcttattcgtttaatgacgaggatgaagttcttcctgtcaaaaaggtggaggttaatgcaaaggaggcattgccaccaacaaaggccacacttaggtcagacaaccaggagatgtccaaggaagagctccggagacaacaccaggctgaacttgctcgtcaaaagaatgaagagactgctagaaggcttgctggggttggctctggttctggtgatgggcgtggtccctcaaggtcatcaaatgagcttgttgcatataagaatgttaatgatgttccatatgcaagagagttggtcatacaagtagatcagaagaatgaagctgtcctcttacctatttatggcagcatggttcctttccatgtttctactgttaagagtgtcacaagtcaccaagacaaccgcacttgcactatccgcatcttcttcaatgtgcctggcatgccattctcaaacgatagcaatctgaagtcgcaaggggctatctacttgaaggagatcacgttccgctcgaaagatccacgacatagcagtgaagttgttcagcaaatcaaaacgttgaggcggcaagttgcttcaagggagtcagagagagctgaaagagccacccttgttactcaggagaaactccagttgacaagcaacagaaacaagccagtgagactttctgatgtgtggataaggcctgcatttggtggacgtgggcggaagcttacaggaactcttgagtcccatgtcaatggttttagatattctacttcaagggctgatgagcgtgtggatatcatgtatgggaatgtaaagcatgccttcttccagccagcagaaaaagaaatgattacactccttcatttccatttgcacaatcatattatggttggaaacaagaagacaaaggatgttcaattttatgttgaggtgatggatgttgttcagactcttggtgggaataggagatcagctcttgatcctgatgaaattgaagaagagcagcgtgagagggaccgaaagaatagaataaacatggatttccagaactttgtgaacaaggttaatgatcactggtcgcagccacaattcaaggggctggatcttgagtttgatgtccctcttagagagcttggattccatggtgttccatataaagcttcagctttcatcattccaacttcgacttgtttggttgaactaatagagacacccttcctggtggtgaccctgagtgagatagagattgttaatttggagagggtgggctttgggacaaagaactttgacatggctatcgtgttcaaggatttcaagaaggatgttcttcgcattgattccataccatcaacatcacttgatgcaataaaggagtggcttgacacgactgacctcaagtactatgagagcaggctgaaccttaactggcgtcctattctgaaaactatcatcgatgatcctcagaaattcattgatgacggtggctgggaattcttgaatatggaagcaaatggcaatgctgcagcctcagttgtgtatttctgtcagttgcgtcttatagctccgttccgttctctcgacaaacgggtgctatgttag
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| Protein seq | MADNGNAKPGGGGSGAYTINLDNFSKRLKVFYDHWKEHNSDLWGSSNAIAIATPPPSEDLRYLKSSALDVWLLGYEFPETIIVFMHKQIHFLCSQKKANLIGTLKKAANDAVGADIVLHVKAKNDSGVGLMEDIVRAVCAQSKSDDPIVGHIAKEAPEGKLLEAWADKLSSSSVQLTDITNGFSELFAMKDTSEITCVKKASYLTSSVMKNFVVPKLEKVIDEERKVTHSSLMDETEKAILDPLKVKVKLKAENVDICYPPVFQSGGKFDLKPGASSNDDYLYYDSASVIICAIGARYGNYCSNMARTFLIDATPTQIKAYETLMKAHEAALEALKPGNRMSAVYQAAVDVIEKNAPELLRNLTKSAGTGIGLEFRESGLNLNPKNDRIIKAGMVFNVSLGLHNLQAEKKSEKTKQYSLLLADTCLVPLENLTASCSKLVKDVAYSFNDEDEVLPVKKVEVNAKEALPPTKATLRSDNQEMSKEELRRQHQAELARQKNEETARRLAGVGSGSGDGRGPSRSSNELVAYKNVNDVPYARELVIQVDQKNEAVLLPIYGSMVPFHVSTVKSVTSHQDNRTCTIRIFFNVPGMPFSNDSNLKSQGAIYLKEITFRSKDPRHSSEVVQQIKTLRRQVASRESERAERATLVTQEKLQLTSNRNKPVRLSDVWIRPAFGGRGRKLTGTLESHVNGFRYSTSRADERVDIMYGNVKHAFFQPAEKEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDVVQTLGGNRRSALDPDEIEEEQRERDRKNRINMDFQNFVNKVNDHWSQPQFKGLDLEFDVPLRELGFHGVPYKASAFIIPTSTCLVELIETPFLVVTLSEIEIVNLERVGFGTKNFDMAIVFKDFKKDVLRIDSIPSTSLDAIKEWLDTTDLKYYESRLNLNWRPILKTIIDDPQKFIDDGGWEFLNMEANGNAAASVVYFCQLRLIAPFRSLDKRVLC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0008510 | OsCMeo_04g0008510.02 | Chr04 | 14651428 | 14652832 | - | IsoSeq | ||
| CDS seq | atgctgagcctgagtctgaatcagaagatgaagattctgacagcgagtccttggtggaatcagatgaggatgatgaggacgattctgaagaagactctgaggaagagaagggtaagacctgggaggagctggaacgggaggcaagcaatgcagacagggagaatggtgcggagtcggacagcgaagaagagaggaggcggcgca
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| Protein seq | MLSLSLNQKMKILTASPWWNQMRMMRTILKKTLRKRRVRPGRSWNGRQAMQTGRMVRSRTAKKRGGGA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.493627 | 25.195015 | 23.197847 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0321600 | RBH | 4.964900 | 6.573102 | 13.282708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g25550 | RBH | 3.254069 | 4.284736 | 3.324143 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0321600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0008030 | RBH | 2.057938 | 29.706758 | 22.123371 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0008670 | RBH | 0.847695 | 9.342107 | 9.753469 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0015220 | RBH | 2.765624 | 3.840588 | 9.398328 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0008150 | RBH | 0.461096 | 0.681814 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0015320 | SBH | 5.997322 | 17.993088 | 17.963135 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0239000 | RBH | 22.660331 | 39.5970935 | 54.551302 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007920 | RBH | 1.155592 | 1.672932 | 3.520285 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0007860 | RBH | 1.424295 | 0.598346 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0008080 | RBH | 2.497844 | 30.861385 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0008140 | RBH | 18.202888 | 22.383169 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0008050 | RBH | 2.570815 | 4.456455 | 4.772603 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0008410 | RBH | 0.975294 | 12.680107 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G008000 | RBH | 1.136996 | 8.534675 | 6.812562 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0008080 | RBH | 3.721145 | 27.488338 | 18.336380 |
