Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0007480 | OGI:04044920 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:12884649-12887089 | ||||||||
| Gene Symbol | BHLH6, OsbHLH006, bHLH006, OsbHLH6, bHLH6, RERJ1, OsRERJ1, bHLH35, OsOsbHLH006 | ||||||||||
| DNA seq | agaggtaattcacacattttcgttttcattaagctggaccaccttattattcatcaatattaatagctacataaacaagtcagcgtactcaagatttccaaaatacttaaatctatcatccagccactaaatcgttgcctcgcaagaaaacaaccacctccatcacgtagtggggtgtcgcaaaaatgacaacaacaacatcaccaagcatacataaaaatgcgctttattgcgaatgagactaggtaaagtaggtggccaaaacgcatgactccatatatctatccagctcataactaatagctcatggagctcaacggactgccggtcgccacaagctgggagagagcagcctccaccatctgcttcatttggacactatccatgtgatctacctgaaatttgaaacaactttattcagccaaaaccccaaaattaacaatgctaaggttttgttcttttgaagaggttgcgaaccccttccctccgcacgtaaaatagagtaatggattaacacatgattaattaaatatattttaaaaatcttaaaaaatatattgttatgatttatttaaaacaatttttgtataatttcttttaaaaatttaacagttcaagaaacgtgcatgcacgtggaagtcaacaaactaactcagcctcaatccccaaaaaaaaaaaactaactcagcctcaataatgtgtatcaaacacctaatttctagaagaggacaaaacacagaacatcccccaaaaactgttgtcttcacatctgtaatcaaatcagcttaaagaaaagtgtggaatttaacgtcacaacaaataaaaaaacgaggggaaaaaaatcatctcccgtgcaatcgaacacgtgccaatcgttttccatggcttcccccaaccaaaacacgcacgtgatgtgacgcccatgtagatgtagtgctcccgtttgtcccccaaaaaattaattcattaattattatctgaagcacgtgcgcgatccatccatccatcgaattgttcgatttctccctcgtgcgcacccgattaatcccatgtggttttcaatcgctttttgcaatcgaagaacagaagaagaagaatcaggtggattcgtaaagcggggagaaggggattttctgatgctttgagattcgggacggttgctttaggattggtgaggatttgattggcctaacatactgacgccgcaaagggagcagcgtgtgatcgcaacgttatttttctacctaaaaatggaagtaaaatgtagtactgcgtgtgaacggtcaaagtcaaacttggaaggtcaaacctaaggaaaggaagaggagctcagtgatcgtgcgtgacgtcagcaatggagatggagattgtattatacctcgacgaagagggtgtgcatgaggcagccggcgacggaggtgatgttggcggtgatgacgcggaggcggagctcctcgagggcgcggcacacccgggccatggcgtcgcggcgcttgctgcacgtcacgctcaccaccagcaccctgtcgcccacctccgacacgcgcagctcctggatctccaccggcggcgccggcgccgccgcggcgagcagggcgtcgctgatggacgacacggacagcgcccgcttcaccttcttcgtccgctccgacgacgacgaggggtggtggtggccgtactcgtgttcctcgtcggcgccgaggccggcgaacgggttcgccgcggccggggcggcgctcgccgcggcggcggactcgagcgcggcgacctcccggagcatctgctgctcctccgcctgcaggcgctggatgtactcgatcgcgtccttgatgatcgacgccttgtccatctgcgcccaaccaccgacgagcagtcagtcagcaatgtcgccgtcgccgccatggacgaacacctctactcctctctcccttaccttggtgatgttgggcacgacactgcggagcgcgtagagcttctcgttgagcttgcggcggcggtcgcgctccatgaggatgttcttgttcgcgccaccggcgtcgtcgccaccgccgccgccgccgcccatcatcatcgtcatcatcccgccaccgctacccgccaccgcggcggctgcgtccccgcccacggccgccggcgccggcgccgacgacgagtgcgacccgtccggcgagctcgactcgtagttggagtcatcctgcgtcggcaggtacatgctgcaaccaaacaccatgtcagcaacaacaatggcggatcggcggcggcggcgaggcggaggcgcacctgtcgagctcctcggactcaaggtagcgctgcgtctcccagtagtaggcgaagctctcgcccatggccatctcggcgtccatggcgcttgctctgcttcgcgtttgctctgcttcgagttcgaggttggcttgtgtctctctccgactccgagctcactt
More
|
||||||||||
| CDS seq | atggacgccgagatggccatgggcgagagcttcgcctactactgggagacgcagcgctaccttgagtccgaggagctcgacagcatgtacctgccgacgcaggatgactccaactacgagtcgagctcgccggacgggtcgcactcgtcgtcggcgccggcgccggcggccgtgggcggggacgcagccgccgcggtggcgggtagcggtggcgggatgatgacgatgatgatgggcggcggcggcggcggtggcgacgacgccggtggcgcgaacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcgctccgcagtgtcgtgcccaacatcaccaagatggacaaggcgtcgatcatcaaggacgcgatcgagtacatccagcgcctgcaggcggaggagcagcagatgctccgggaggtcgccgcgctcgagtccgccgccgcggcgagcgccgccccggccgcggcgaacccgttcgccggcctcggcgccgacgaggaacacgagtacggccaccaccacccctcgtcgtcgtcggagcggacgaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggcggcgccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgacagggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgccgcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggctgcctcatgcacaccctcttcgtcgaggtagatcacatggatagtgtccaaatgaagcagatggtggaggctgctctctcccagcttgtggcgaccggcagtccgttgagctccatgagctattag
More
|
||||||||||
| Protein seq | MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMMTMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREVAALESAAAASAAPAAANPFAGLGADEEHEYGHHHPSSSSERTKKVKRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVATGSPLSSMSY |
||||||||||
| Function | Transcription factor bHLH35 [UniProtKB/Swiss-Prot:Q2HIV9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0007480 | OsCMeo_04g0007480.01 | Chr04 | 12884649 | 12887089 | - | NAM | ||
| CDS seq | atggacgccgagatggccatgggcgagagcttcgcctactactgggagacgcagcgctaccttgagtccgaggagctcgacagcatgtacctgccgacgcaggatgactccaactacgagtcgagctcgccggacgggtcgcactcgtcgtcggcgccggcgccggcggccgtgggcggggacgcagccgccgcggtggcgggtagcggtggcgggatgatgacgatgatgatgggcggcggcggcggcggtggcgacgacgccggtggcgcgaacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcgctccgcagtgtcgtgcccaacatcaccaagatggacaaggcgtcgatcatcaaggacgcgatcgagtacatccagcgcctgcaggcggaggagcagcagatgctccgggaggtcgccgcgctcgagtccgccgccgcggcgagcgccgccccggccgcggcgaacccgttcgccggcctcggcgccgacgaggaacacgagtacggccaccaccacccctcgtcgtcgtcggagcggacgaagaaggtgaagcgggcgctgtccgtgtcgtccatcagcgacgccctgctcgccgcggcggcgccggcgccgccggtggagatccaggagctgcgcgtgtcggaggtgggcgacagggtgctggtggtgagcgtgacgtgcagcaagcgccgcgacgccatggcccgggtgtgccgcgccctcgaggagctccgcctccgcgtcatcaccgccaacatcacctccgtcgccggctgcctcatgcacaccctcttcgtcgaggtagatcacatggatagtgtccaaatgaagcagatggtggaggctgctctctcccagcttgtggcgaccggcagtccgttgagctccatgagctattag
More
|
|||||||
| Protein seq | MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMMTMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNITKMDKASIIKDAIEYIQRLQAEEQQMLREVAALESAAAASAAPAAANPFAGLGADEEHEYGHHHPSSSSERTKKVKRALSVSSISDALLAAAAPAPPVEIQELRVSEVGDRVLVVSVTCSKRRDAMARVCRALEELRLRVITANITSVAGCLMHTLFVEVDHMDSVQMKQMVEAALSQLVATGSPLSSMSY
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0007480 | OsCMeo_04g0007480.02 | Chr04 | 12886522 | 12887076 | - | NAM | ||
| CDS seq | atggacgccgagatggccatgggcgagagcttcgcctactactgggagacgcagcgctaccttgagtccgaggagctcgacagcatgtacctgccgacgcaggatgactccaactacgagtcgagctcgccggacgggtcgcactcgtcgtcggcgccggcgccggcggccgtgggcggggacgcagccgccgcggtggcgggtagcggtggcgggatgatgacgatgatgatgggcggcggcggcggcggtggcgacgacgccggtggcgcgaacaagaacatcctcatggagcgcgaccgccgccgcaagctcaacgagaagctctacgcgctccgcagtgtcgtgcccaacatcaccaaggtaagggagagaggagtagaggtgttcgtccatggcggcgacggcgacattgctgactga
More
|
|||||||
| Protein seq | MDAEMAMGESFAYYWETQRYLESEELDSMYLPTQDDSNYESSSPDGSHSSSAPAPAAVGGDAAAAVAGSGGGMMTMMMGGGGGGGDDAGGANKNILMERDRRRKLNEKLYALRSVVPNITKVRERGVEVFVHGGDGDIAD |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.322224 | 0.0 | 2.659605 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0301500 | RBH | 0.373723 | 0.0 | 0.371247 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g23550 | RBH | 0.678494 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0301500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0007100 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007730 | RBH | 0.0 | 0.0 | 0.365344 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0007450 | RBH | 0.258662 | 0.0 | 0.593277 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0007190 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007370 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0216900 | RBH | 3.143691 | 151.2041855 | 4.2609285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0007130 | RBH | 0.111986 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0218700 | RBH | 3.4853035 | 101.1582715 | 0.424705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0006920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0007200 | RBH | 0.140525 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0007280 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0007110 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0007430 | RBH | 0.188682 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G007100 | RBH | 0.000000 | 0.0 | 0.232642 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0007170 | RBH | 0.0 | 0.0 | 1.511777 |
