Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0004920 | OGI:04019130 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:7522402-7524868 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttactcattaattccctggacctccttcccttgtgagcataaaaccacttcttctgcctcatctgaaatatctgggatatactcaggtatatccactttctccccttcccccaaagagtcttcctcttcttccaccatctcattgttcttgtgtctcttgtgcccatgatctccttcccttttttgggtgtccttcttctcttcttcttctttttttgattcccctttgtcagcctcatggctgtcctgagagtcttcctcatcatctcctctcctccctcttgatctgtatgcaggtttgggatcatcaggatcatcttggtgatgttgtcttactccttcaggattccaagtaatcctatacccaactctgtttagaaagatctcagacgtcccccctatcttcaaaggatccctgcaaaggacttttactctcacagcttctctgttcaagctaattgagtctacctccatgggatctccaatcaagtgggcaattttttcaataactttttcagatctagccaatggtgggactcctgtagctctgacccaaacctcctgaagctcggcaaaggcctcaatggttctctcagtctccctaacattagctctagcattggataattcaaagtcaaagcccttgagtcttgttaactccctcctagcatctttggatggaaattccaccaaatatttcttctgctccacctgtttaaccttccaatcccactgcttatgtttctcatacaggtatttcatctccataacaatcttcgagatcgaagtcagcccactttcgatggttagaattcctgtaactggacgcttctccacctcatcttcctggacgacaatatgcaaacaatgaaaaacttgaccagggtactgcggctgattttagcttatcaagttgaagcacaaaacaccaatatcatgcacgcatatattctctagtagaacttccgagcccttttccgagccgtttaggaagtaatcagatatagaaaaattaaactgaatagttattttgtactaccattagacagtatagatcaacacagtcatggattttggggaaacagatatttgagtcagaagattttaactatttgagtcatggattttaactatccatagtgcttctagcgctgcaattcaagttcacagtgtaaatcgaggatctaaatcaattaaacagcaaaagcaacctgaagaaaggagctagctactgctgaagcagcaatagaagttgagcactagaagatgttgaaaggctctgaaactcacatggttaaagcagcaaccggccaagaaggatgggccaaacatgtgtgtggatcacgtagcttgtaaatctgccgatcctcccgcttcaccgtgatgaccaaatcggtgtcagcagaatcatccgcctccacctccgcctccgcctgagagtaagtgcgatgaacaatacgtgctactatgtcctgcttggccggggaagcagtggatcgaaagtcgaaggaggagaagctgcccttccccatggtgcagagaaggtgccccggaacaatgcgcttggattccacctgcaactcaacgatggacagctccttcttgcctgtgcctgaacctgcaattcctggagggaagaccatgacctccatgtagtacactgaagccgcgccgccctttgccatggagcaggaaacgaagcggtggtcgccaagaggcacggcctgaccggtgaaaggcaggttcgtgtcgagcaccatctcccactgctcggcgtccatgtcgaaggcgcaggtgcccttgtcctggccctgctgctgcaccgacaccgagagcaggatgtgggagccgacgatggcgtaggccgcgacgcgcaccgccggcggatcgcggtactccagcgggttgagacggcacgggaagatgggcggcggcggcagctcgcgccatccgaagtagccgaggctgtcgaggacgaggaaccatggctcgaagtcccgcccgttcacgacggaggggcagcaggagacggcgtagagcttgccgccgtgcgagacgaggacggggttcaccttagggaacacgagccggcagccggcgcgcaccgtggaggtcttggggtcgtacacggtggtctgatccagcccgatgcccacgatccgcgtccccaccgccgcgaacgacatgccgcggccgctggtggagtggagcaaaaggcggacggtggcgccggcggcgacctcgattaccgagtgggtgggctcctcctccactccgtgcgccaacaccatgtacaccgctggctcctttgcggcagaaccctcggctggggcctccttccccttccccttcctcttcttgttccccgagcgaacgcggacaagccgagctaccggtgccggtgctggcgccggcgccgctgccgcaattttcttcctcttcttgtccggcatcatcatcttccctc
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| CDS seq | atgatgatgccggacaagaagaggaagaaaattgcggcagcggcgccggcgccagcaccggcaccggtagctcggcttgtccgcgttcgctcggggaacaagaagaggaaggggaaggggaaggaggccccagccgagggttctgccgcaaaggagccagcggtgtacatggtgttggcgcacggagtggaggaggagcccacccactcggtaatcgaggtcgccgccggcgccaccgtccgccttttgctccactccaccagcggccgcggcatgtcgttcgcggcggtggggacgcggatcgtgggcatcgggctggatcagaccaccgtgtacgaccccaagacctccacggtgcgcgccggctgccggctcgtgttccctaaggtgaaccccgtcctcgtctcgcacggcggcaagctctacgccgtctcctgctgcccctccgtcgtgaacgggcgggacttcgagccatggttcctcgtcctcgacagcctcggctacttcggatggcgcgagctgccgccgccgcccatcttcccgtgccgtctcaacccgctggagtaccgcgatccgccggcggtgcgcgtcgcggcctacgccatcgtcggctcccacatcctgctctcggtgtcggtgcagcagcagggccaggacaagggcacctgcgccttcgacatggacgccgagcagtgggagatggtgctcgacacgaacctgcctttcaccggtcaggccgtgcctcttggcgaccaccgcttcgtttcctgctccatggcaaagggcggcgcggcttcagtgtactacatggaggtcatggtcttccctccaggaattgcaggttcaggcacaggcaagaaggagctgtccatcgttgagttgcaggtggaatccaagcgcattgttccggggcaccttctctgcaccatggggaagggcagcttctcctccttcgactttcgatccactgcttccccggccaagcaggacatagtagcacgtattgttcatcgcacttactctcaggcggaggcggaggtggaggcggatgattctgctgacaccgatttggtcatcacggaagatgaggtggagaagcgtccagttacaggaattctaaccatcgaaagtgggctgacttcgatctcgaagattgttatggagatgaaatacctgtatgagaaacataagcagtgggattggaaggttaaacaggtggagcagaagaaatatttggtggaatttccatccaaagatgctaggagggagttaacaagactcaagggctttgactttgaattatccaatgctagagctaatgttagggagactgagagaaccattgaggcctttgccgagcttcaggaggtttgggtcagagctacaggagtcccaccattggctagatctgaaaaagttattgaaaaaattgcccacttgattggagatcccatggaggtagactcaattagcttgaacagagaagctgtgagagtaaaagtcctttgcagggatcctttgaagataggggggacgtctgagatctttctaaacagagttgggtataggattacttggaatcctgaaggagtaagacaacatcaccaagatgatcctgatgatcccaaacctgcatacagatcaagagggaggagaggagatgatgaggaagactctcaggacagccatgaggctgacaaaggggaatcaaaaaaagaagaagaagagaagaaggacacccaaaaaagggaaggagatcatgggcacaagagacacaagaacaatgagatggtggaagaagaggaagactctttgggggaaggggagaaagtggatatacctgagtatatcccagatatttcagatgaggcagaagaagtggttttatgctcacaagggaaggaggtccagggaattaatgagtaa
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| Protein seq | MMMPDKKRKKIAAAAPAPAPAPVARLVRVRSGNKKRKGKGKEAPAEGSAAKEPAVYMVLAHGVEEEPTHSVIEVAAGATVRLLLHSTSGRGMSFAAVGTRIVGIGLDQTTVYDPKTSTVRAGCRLVFPKVNPVLVSHGGKLYAVSCCPSVVNGRDFEPWFLVLDSLGYFGWRELPPPPIFPCRLNPLEYRDPPAVRVAAYAIVGSHILLSVSVQQQGQDKGTCAFDMDAEQWEMVLDTNLPFTGQAVPLGDHRFVSCSMAKGGAASVYYMEVMVFPPGIAGSGTGKKELSIVELQVESKRIVPGHLLCTMGKGSFSSFDFRSTASPAKQDIVARIVHRTYSQAEAEVEADDSADTDLVITEDEVEKRPVTGILTIESGLTSISKIVMEMKYLYEKHKQWDWKVKQVEQKKYLVEFPSKDARRELTRLKGFDFELSNARANVRETERTIEAFAELQEVWVRATGVPPLARSEKVIEKIAHLIGDPMEVDSISLNREAVRVKVLCRDPLKIGGTSEIFLNRVGYRITWNPEGVRQHHQDDPDDPKPAYRSRGRRGDDEEDSQDSHEADKGESKKEEEEKKDTQKREGDHGHKRHKNNEMVEEEEDSLGEGEKVDIPEYIPDISDEAEEVVLCSQGKEVQGINE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0004920 | OsCMeo_04g0004920.01 | Chr04 | 7522402 | 7524868 | - | NAM | ||
| CDS seq | atgatgatgccggacaagaagaggaagaaaattgcggcagcggcgccggcgccagcaccggcaccggtagctcggcttgtccgcgttcgctcggggaacaagaagaggaaggggaaggggaaggaggccccagccgagggttctgccgcaaaggagccagcggtgtacatggtgttggcgcacggagtggaggaggagcccacccactcggtaatcgaggtcgccgccggcgccaccgtccgccttttgctccactccaccagcggccgcggcatgtcgttcgcggcggtggggacgcggatcgtgggcatcgggctggatcagaccaccgtgtacgaccccaagacctccacggtgcgcgccggctgccggctcgtgttccctaaggtgaaccccgtcctcgtctcgcacggcggcaagctctacgccgtctcctgctgcccctccgtcgtgaacgggcgggacttcgagccatggttcctcgtcctcgacagcctcggctacttcggatggcgcgagctgccgccgccgcccatcttcccgtgccgtctcaacccgctggagtaccgcgatccgccggcggtgcgcgtcgcggcctacgccatcgtcggctcccacatcctgctctcggtgtcggtgcagcagcagggccaggacaagggcacctgcgccttcgacatggacgccgagcagtgggagatggtgctcgacacgaacctgcctttcaccggtcaggccgtgcctcttggcgaccaccgcttcgtttcctgctccatggcaaagggcggcgcggcttcagtgtactacatggaggtcatggtcttccctccaggaattgcaggttcaggcacaggcaagaaggagctgtccatcgttgagttgcaggtggaatccaagcgcattgttccggggcaccttctctgcaccatggggaagggcagcttctcctccttcgactttcgatccactgcttccccggccaagcaggacatagtagcacgtattgttcatcgcacttactctcaggcggaggcggaggtggaggcggatgattctgctgacaccgatttggtcatcacggaagatgaggtggagaagcgtccagttacaggaattctaaccatcgaaagtgggctgacttcgatctcgaagattgttatggagatgaaatacctgtatgagaaacataagcagtgggattggaaggttaaacaggtggagcagaagaaatatttggtggaatttccatccaaagatgctaggagggagttaacaagactcaagggctttgactttgaattatccaatgctagagctaatgttagggagactgagagaaccattgaggcctttgccgagcttcaggaggtttgggtcagagctacaggagtcccaccattggctagatctgaaaaagttattgaaaaaattgcccacttgattggagatcccatggaggtagactcaattagcttgaacagagaagctgtgagagtaaaagtcctttgcagggatcctttgaagataggggggacgtctgagatctttctaaacagagttgggtataggattacttggaatcctgaaggagtaagacaacatcaccaagatgatcctgatgatcccaaacctgcatacagatcaagagggaggagaggagatgatgaggaagactctcaggacagccatgaggctgacaaaggggaatcaaaaaaagaagaagaagagaagaaggacacccaaaaaagggaaggagatcatgggcacaagagacacaagaacaatgagatggtggaagaagaggaagactctttgggggaaggggagaaagtggatatacctgagtatatcccagatatttcagatgaggcagaagaagtggttttatgctcacaagggaaggaggtccagggaattaatgagtaa
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| Protein seq | MMMPDKKRKKIAAAAPAPAPAPVARLVRVRSGNKKRKGKGKEAPAEGSAAKEPAVYMVLAHGVEEEPTHSVIEVAAGATVRLLLHSTSGRGMSFAAVGTRIVGIGLDQTTVYDPKTSTVRAGCRLVFPKVNPVLVSHGGKLYAVSCCPSVVNGRDFEPWFLVLDSLGYFGWRELPPPPIFPCRLNPLEYRDPPAVRVAAYAIVGSHILLSVSVQQQGQDKGTCAFDMDAEQWEMVLDTNLPFTGQAVPLGDHRFVSCSMAKGGAASVYYMEVMVFPPGIAGSGTGKKELSIVELQVESKRIVPGHLLCTMGKGSFSSFDFRSTASPAKQDIVARIVHRTYSQAEAEVEADDSADTDLVITEDEVEKRPVTGILTIESGLTSISKIVMEMKYLYEKHKQWDWKVKQVEQKKYLVEFPSKDARRELTRLKGFDFELSNARANVRETERTIEAFAELQEVWVRATGVPPLARSEKVIEKIAHLIGDPMEVDSISLNREAVRVKVLCRDPLKIGGTSEIFLNRVGYRITWNPEGVRQHHQDDPDDPKPAYRSRGRRGDDEEDSQDSHEADKGESKKEEEEKKDTQKREGDHGHKRHKNNEMVEEEEDSLGEGEKVDIPEYIPDISDEAEEVVLCSQGKEVQGINE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.626968 | 0.0 | 2.271723 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0220501 | RBH | 0.000000 | 0.250626 | 0.746643 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g14340 | RBH | 0.211301 | 0.358792 | 0.230471 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0220501 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0003390 | RBH | 0.0 | 0.0 | 0.130065 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005060 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0004690 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0004590 | SBH | 1.057651 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0109700 | SBH | 0.0205855 | 0.0089065 | 0.0116115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0004670 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0117600 | SBH | 0.0775615 | 0.0100015 | 0.1013105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0004430 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0004760 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0004500 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0004640 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G004790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0004510 | SBH | 0.000000 | 0.0 | 0.0 |
