Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_04g0001580 | OGI:04006410 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr04:2213019-2213645 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctatggcaagtatgtggtaatggcagaatccttgacagagttgatgtcgatggcgatgtggtcggtcttttccttcgggtcattgtcaaatccgatgccgatgtcgaactcgacggcgatgaaccgatcatccggggcgatattgctagtggtcgtcttatcagtgatgagtccgaggttgcccccggccgacctgtacggcactttagaagggaaactggcgaggaagaaagccatgccatcacctctgcatttaccgctgccttcgatgggcctgatggcgaaggtgaagctcgtggagaagctggccaccttgctaatgcggccgttggctgctaattggtaaagctgcaccggatgagcatacgacaaccggccaccgcgcctgcaaacctggtcgttccaggtgcaggtgagttctaccggcgccccagctttctgcggctcgatcgcgtcgtcctggaatacgagatcttggcggtacgtggatgggtggtcggctgagaagttgaagctgaacacaggtggcgctgctgctgctccagcgatgaggtgatcagaagcatcaagcagcatggagagtaagaagaggaggccgaggtagccagggcggaggagctgcgacat
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| CDS seq | atgtcgcagctcctccgccctggctacctcggcctcctcttcttactctccatgctgcttgatgcttctgatcacctcatcgctggagcagcagcagcgccacctgtgttcagcttcaacttctcagccgaccacccatccacgtaccgccaagatctcgtattccaggacgacgcgatcgagccgcagaaagctggggcgccggtagaactcacctgcacctggaacgaccaggtttgcaggcgcggtggccggttgtcgtatgctcatccggtgcagctttaccaattagcagccaacggccgcattagcaaggtggccagcttctccacgagcttcaccttcgccatcaggcccatcgaaggcagcggtaaatgcagaggtgatggcatggctttcttcctcgccagtttcccttctaaagtgccgtacaggtcggccgggggcaacctcggactcatcactgataagacgaccactagcaatatcgccccggatgatcggttcatcgccgtcgagttcgacatcggcatcggatttgacaatgacccgaaggaaaagaccgaccacatcgccatcgacatcaactctgtcaaggattctgccattaccacatacttgccatag
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| Protein seq | MSQLLRPGYLGLLFLLSMLLDASDHLIAGAAAAPPVFSFNFSADHPSTYRQDLVFQDDAIEPQKAGAPVELTCTWNDQVCRRGGRLSYAHPVQLYQLAANGRISKVASFSTSFTFAIRPIEGSGKCRGDGMAFFLASFPSKVPYRSAGGNLGLITDKTTTSNIAPDDRFIAVEFDIGIGFDNDPKEKTDHIAIDINSVKDSAITTYLP |
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| Function | Agglutinin-2 [UniProtKB/Swiss-Prot:Q39529] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_04g0001580 | OsCMeo_04g0001580.01 | Chr04 | 2213019 | 2213645 | - | NAM | ||
| CDS seq | atgtcgcagctcctccgccctggctacctcggcctcctcttcttactctccatgctgcttgatgcttctgatcacctcatcgctggagcagcagcagcgccacctgtgttcagcttcaacttctcagccgaccacccatccacgtaccgccaagatctcgtattccaggacgacgcgatcgagccgcagaaagctggggcgccggtagaactcacctgcacctggaacgaccaggtttgcaggcgcggtggccggttgtcgtatgctcatccggtgcagctttaccaattagcagccaacggccgcattagcaaggtggccagcttctccacgagcttcaccttcgccatcaggcccatcgaaggcagcggtaaatgcagaggtgatggcatggctttcttcctcgccagtttcccttctaaagtgccgtacaggtcggccgggggcaacctcggactcatcactgataagacgaccactagcaatatcgccccggatgatcggttcatcgccgtcgagttcgacatcggcatcggatttgacaatgacccgaaggaaaagaccgaccacatcgccatcgacatcaactctgtcaaggattctgccattaccacatacttgccatag
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| Protein seq | MSQLLRPGYLGLLFLLSMLLDASDHLIAGAAAAPPVFSFNFSADHPSTYRQDLVFQDDAIEPQKAGAPVELTCTWNDQVCRRGGRLSYAHPVQLYQLAANGRISKVASFSTSFTFAIRPIEGSGKCRGDGMAFFLASFPSKVPYRSAGGNLGLITDKTTTSNIAPDDRFIAVEFDIGIGFDNDPKEKTDHIAIDINSVKDSAITTYLP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 3.555763 | 0.524491 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0140666 | RBH | 0.0 | 0.0 | 0.400213 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05470 | RBH | 0.0 | 0.0 | 0.073992 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0140666 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001420 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001650 | SBH | 0.0 | 5.393635 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001410 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001710 | RBH | 0.110908 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001690 | RBH | 0.000000 | 3.068133 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0039600 | RBH | 0 | 3.247837 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001850 | SBH | 0.0 | 0.656101 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0039300 | RBH | 0.1809125 | 0.077767 | 0.00381 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001600 | RBH | 0.0 | 0.273945 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001920 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001730 | RBH | 0.0 | 9.881441 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001530 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001540 | SBH | 0.0 | 1.500981 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001750 | RBH | 0.0 | 0.000000 | 0.365366 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001740 | RBH | 0.0 | 3.440529 | 0.0 |
