Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0039730 | OGI:03096180 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:35916889-35920344 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaactgtcataatctgattatcctgatctcactcgtcaacttttcttccaggaagataatatgagaatacagaacaatgaggacaactcgacgcaacagtcagtggggaggagcaagcttggaggagtcaaatagctcaaacagtcatgcacaatacttgatatggcctggtctaccaaagcagtttttctggatgtctctcttgggaagatacatcattttgttcccccacgaaaggctacaacaccctgattaacacaagcaaaagtttcacccaaatacatcctacagaatcattcctcaactcccagagagcaaaaggtataaaagaaccgtttcggtatagtcaagcaagctatctaagcagaatcaatggaacaatgcgaaattccgagcatcagaaccagcagtgcgtatggatggctgtcatcagaacctgcggagcccacgatcaaacatccttgcagatgggcactcatatgacatatgacccctcccaccgcaggtgccacagatcatggttgtcatgcagttgcggctgatgtgccctggcttgccacacaagcggcaggtaatgtcacggaaagggccgccctgtatctctgaagaaatggtcgttttttgacagttccgagcaagatgcccagagacattgcacaggttgcaaacaggctcgttcgtgcactcccgagctatgtgcccaggctgacgacagttgttgcaagcccgctcgttggtgcagtcaacagcaatgtggcctggcttaaaacatttgttgcatagcttactagatcctgaacttgggcaatcacgtgccagatgacctgtcttgctgcaggtgtgacacagggcgtcattcttgcattcggtagcaatgtggccagactgcttgcagttccaacaaacagtttcagaagtgcattctgctgcgaagtgtctgtttaaaataacgcccaaaaagaagttagcgcactttcttcaatatatttccaagactaaaagatggcagcagaaaatggaacacaagagcaagttaacagtactaggcccgaaacacttaatgataacaacatctagattccccccaaaatgaagcagatgcagctacattaagtgagtgtttcatctcattttaccctggaagattgcatctgttgcatgtagcagtagattggcaatccctagcaaagtgaccaggcctcctgcaattcttgcatataagatccctggaaaattattcatattaacatggttattcccttgagggttcgacagattgtactccaatatacagaaaaaaaaacacatttggcataactagattcaaagggcatgtgtcttcttaattgagagcatagatttataaatgacacgagtaattgacactttctagtggatatacatggtgtatctgcactaagtaaatttgtgctcaggtctttaatgtgattggaatttgaaaagtggatcatggattacaagtgcacaccattatacataatacatgtagtgggacaactgccaagggctcatactgatgggggaaaacatcattgcatttgcttcagaatagcattgtctgatttgaaatactttcaataatgtgctagttatcacaaatataacacagttcagtgagggcgctgttaaggcattgtaacagagttgcggttattacattccatacttcctgatactgagttagccttgtttctcaaatttgtaccagagaactacagatgacaacgtcaggccctgatgaataatagttttttttcttaaaatttctcaacatttatcccactagttaagccctaccatttagattttttttcatgctatatttgttgatggaaacagtaaaggcccctccagaatccataccacagattctaaaaactggttacatgaccaattcaacgtctaataggtctgaataatggttggatcattgaaccagcagttcaaagatattatgctttaataagtttaaacttacttcatagttatagcttaataggactgaaccctgaaacaagctttataataccttgggggttgaggtgggtcaagtctgggggattggcagaacaactaaataaattaacatgtttctctttcttcctctgggcttttcgccaaccctaccatacatttgccatgcaattatcctgacacctccgtgaccagttgaccacaagccaaattttggttaacaatccatttccctcaatggagctaacgtatgtccatgaccaaaatgtagtgaagagcagacaatgaacacaataatggaggcaaacaaaaattgtgtgaactcaatgttattattggatgtaccattcaggtaatataaacaccccgtgcaggggcggagccagatttagctctcacctagggctgggctagtataattttacacaagtgggtttttagttcctaattttttagaacttagcagggtaatctacatggtatttgagcttcgcaatagagatgaagcctttagctaccctactccggcatctgctcctagaactacgcaaatatacaactcaatgtagcatcacttgcaagcaagatttggagacacacctgtggccgcgatgttctcttctacgaattgggctacggctacggctgcggctgcggctgcgacgtgatacacgctcactacgcagcctttctcgccgagggcttcggcttcggctcctgctcctgctgcgactcctgctcttgctcttgctcttgctcttgctcccgcttctgcttctgcttctgctcctgctgttgctcctgctccttgatggactcattgtaacagcggcagacctaaagtgaggcttggggattcagctgaaccacaaataaataaataaaatggaaacgaattgctattagtaaatcaaatcgggacgaaactggatgaattaattcgacaggagaaacatcaatcgaattccaaatggatccctaatctgtccatgccggctcatgaaatggattacaattttttgggttcgaaactgacctgctccatttcatactggtcgacgcagcgagggtgctgggcgacatcgccggcgcgccgtagaccttccgggctgctccgccggcggccggccaccagcaaatcaggatcgaggaacagcggcggccggggaagaggacaagaggcggcggcgggggcggatgcggatctcgaagaggacgcggtgtgggggcccgggggttggaggtcgacgcggtgggcgctcggggaggggaggggaggggaggggaggggagggaggccgacgcggtggcgccggggaggaggacgcccggcggcgaggcggcggcgctatcgagccgcggtcatgcggcgggtgaccgcgtgagattgcgaggtgactggcgtctgctgctgctgctgctggggtggggaatggcgttagggtagggttcgaggaaatt
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| CDS seq | atgagtccatcaaggagcaggagcaacagcaggagcagaagcagaagcagaagcgggagcaagagcaagagcaagagcaagagcaggagtcgcagcaggagcaggagccgaagccgaagccctcggcgagaaaggctgcgtagtgagcgtgtatcacgtcgcagccgcagccgcagccgtagccgtagcccaattcgtagaagagaacatcgcggccacagggatcttatatgcaagaattgcaggaggcctggtcactttgctagggattgccaatctactgctacatgcaacagatgcaatcttccaggacacttcgcagcagaatgcacttctgaaactgtttgttggaactgcaagcagtctggccacattgctaccgaatgcaagaatgacgccctgtgtcacacctgcagcaagacaggtcatctggcacgtgattgcccaagttcaggatctagtaagctatgcaacaaatgttttaagccaggccacattgctgttgactgcaccaacgagcgggcttgcaacaactgtcgtcagcctgggcacatagctcgggagtgcacgaacgagcctgtttgcaacctgtgcaatgtctctgggcatcttgctcggaactgtcaaaaaacgaccatttcttcagagatacagggcggccctttccgtgacattacctgccgcttgtgtggcaagccagggcacatcagccgcaactgcatgacaaccatgatctgtggcacctgcggtgggaggggtcatatgtcatatgagtgcccatctgcaaggatgtttgatcgtgggctccgcaggttctga
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| Protein seq | MSPSRSRSNSRSRSRSRSGSKSKSKSKSRSRSRSRSRSRSPRRERLRSERVSRRSRSRSRSRSPIRRREHRGHRDLICKNCRRPGHFARDCQSTATCNRCNLPGHFAAECTSETVCWNCKQSGHIATECKNDALCHTCSKTGHLARDCPSSGSSKLCNKCFKPGHIAVDCTNERACNNCRQPGHIARECTNEPVCNLCNVSGHLARNCQKTTISSEIQGGPFRDITCRLCGKPGHISRNCMTTMICGTCGGRGHMSYECPSARMFDRGLRRF |
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| Function | DNA-binding protein HEXBP [UniProtKB/Swiss-Prot:Q04832] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0039730 | OsCMeo_03g0039730.02 | Chr03 | 35916889 | 35920293 | - | NAM | ||
| CDS seq | atgagtccatcaaggagcaggagcaacagcaggagcagaagcagaagcagaagcgggagcaagagcaagagcaagagcaagagcaggagtcgcagcaggagcaggagccgaagccgaagccctcggcgagaaaggctgcgtagtgagcgtgtatcacgtcgcagccgcagccgcagccgtagccgtagcccaattcgtagaagagaacatcgcggccacagggatcttatatgcaagaattgcaggaggcctggtcactttgctagggattgccaatctactgctacatgcaacagatgcaatcttccaggacacttcgcagcagaatgcacttctgaaactgtttgttggaactgcaagcagtctggccacattgctaccgaatgcaagaatgacgccctgtgtcacacctgcagcaagacaggtcatctggcacgtgattgcccaagttcaggatctagtaagctatgcaacaaatgttttaagccaggccacattgctgttgactgcaccaacgagcgggcttgcaacaactgtcgtcagcctgggcacatagctcgggagtgcacgaacgagcctgtttgcaacctgtgcaatgtctctgggcatcttgctcggaactgtcaaaaaacgaccatttcttcagagatacagggcggccctttccgtgacattacctgccgcttgtgtggcaagccagggcacatcagccgcaactgcatgacaaccatgatctgtggcacctgcggtgggaggggtcatatgtcatatgagtgcccatctgcaaggatgtttgatcgtgggctccgcaggttctga
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| Protein seq | MSPSRSRSNSRSRSRSRSGSKSKSKSKSRSRSRSRSRSRSPRRERLRSERVSRRSRSRSRSRSPIRRREHRGHRDLICKNCRRPGHFARDCQSTATCNRCNLPGHFAAECTSETVCWNCKQSGHIATECKNDALCHTCSKTGHLARDCPSSGSSKLCNKCFKPGHIAVDCTNERACNNCRQPGHIARECTNEPVCNLCNVSGHLARNCQKTTISSEIQGGPFRDITCRLCGKPGHISRNCMTTMICGTCGGRGHMSYECPSARMFDRGLRRF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0039730 | OsCMeo_03g0039730.01 | Chr03 | 35916904 | 35920344 | - | NAM | ||
| CDS seq | atggagcaggtctgccgctgttacaatgagtccatcaaggagcaggagcaacagcaggagcagaagcagaagcagaagcgggagcaagagcaagagcaagagcaagagcaggagtcgcagcaggagcaggagccgaagccgaagccctcggcgagaaaggctgcggatcttatatgcaagaattgcaggaggcctggtcactttgctagggattgccaatctactgctacatgcaacagatgcaatcttccaggacacttcgcagcagaatgcacttctgaaactgtttgttggaactgcaagcagtctggccacattgctaccgaatgcaagaatgacgccctgtgtcacacctgcagcaagacaggtcatctggcacgtgattgcccaagttcaggatctagtaagctatgcaacaaatgttttaagccaggccacattgctgttgactgcaccaacgagcgggcttgcaacaactgtcgtcagcctgggcacatagctcgggagtgcacgaacgagcctgtttgcaacctgtgcaatgtctctgggcatcttgctcggaactgtcaaaaaacgaccatttcttcagagatacagggcggccctttccgtgacattacctgccgcttgtgtggcaagccagggcacatcagccgcaactgcatgacaaccatgatctgtggcacctgcggtgggaggggtcatatgtcatatgagtgcccatctgcaaggatgtttgatcgtgggctccgcaggttctga
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| Protein seq | MEQVCRCYNESIKEQEQQQEQKQKQKREQEQEQEQEQESQQEQEPKPKPSARKAADLICKNCRRPGHFARDCQSTATCNRCNLPGHFAAECTSETVCWNCKQSGHIATECKNDALCHTCSKTGHLARDCPSSGSSKLCNKCFKPGHIAVDCTNERACNNCRQPGHIARECTNEPVCNLCNVSGHLARNCQKTTISSEIQGGPFRDITCRLCGKPGHISRNCMTTMICGTCGGRGHMSYECPSARMFDRGLRRF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 35919720 | 35919920 | - | OsCMeo_03g0039730.02 | OsCMeo_03g0039730.02,OsCMeo_03g0039730.01 | All |
| A5 | Chr03 | 35918114 | 35919566 | - | OsCMeo_03g0039730.02 | OsCMeo_03g0039730.02,OsCMeo_03g0039730.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.890950 | 6.707166 | 8.757635 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0820700 | RBH | 0.524015 | 0.419175 | 2.313111 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g60600 | RBH | 0.332231 | 0.264320 | 0.537433 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0820700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0039990 | RBH | 0.111733 | 5.427525 | 3.067548 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0039670 | RBH | 0.303988 | 3.162474 | 1.386262 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0039980 | RBH | 0.166972 | 0.137418 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0039520 | RBH | 0.000000 | 8.864212 | 12.009585 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0587300 | RBH | 6.5985185 | 15.156196 | 8.9865625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0039270 | RBH | 0.175573 | 0.799332 | 0.621592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0589700 | RBH | 4.034128 | 8.550635 | 7.573965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0039850 | RBH | 0.155403 | 0.076421 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0039780 | RBH | 0.051502 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0039420 | RBH | 0.000000 | 46.377621 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0039520 | RBH | 0.236466 | 0.531559 | 0.528832 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0039570 | RBH | 0.262164 | 2.945453 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G039340 | RBH | 0.249656 | 4.809745 | 1.972016 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0039080 | RBH | 0.000000 | 12.257521 | 5.782651 |
