Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0033350 | OGI:03083700 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:31406586-31408786 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcaatgtcatatgcatttcacattccacaagtctgaaaatgcaatatcagtatatccatccactaattcaatacatatccaaagtctcaaatttcatcttcctcctacatcgagagcaacagcagcacatctgcaatagcttcacagcagcagcatcgcaatgaccaaaagcacaatagcaacagcacaacggccagaagcacaacagcaccaaaataacatctcacaatcacaatggtcgcaagttcagtgtcaccaaaatatcatctggaacctaattgagtatgagagcttactgctgagcatctgatgatgcaaacttgctgccaatcaaggagcgaacgaagctttggatttcacttccttgctgcctcagcttctcagtttcttcttcattcttccttgctgcctctttctggtcatctaattgtttcaccatttagcaagccgaaaattgcacggatattctgcaaagcatcatattgcaatgaaatattccttaaggaagtaataaaataagttttttacaagttgttgtagtcagactttaaagctgatttggctatttcattcataacattgcaaccaacctatagggataagcattgttaattcttgtgaacgataagcgaaatggattctgcatacaaaccaaaaatttatgattgatggttgtctccatatgcacaaaagattactacacttctggaaatagcttaatccatccacaaacaaaacagagcatttgatattctatttctctgacatgtgcatgccagctaaatgatcactactacaaagcaaaataatcggaacccaggtcaggaaaagtgaagtcagaaatctgaagtgcataatcgaaatttatgtgagcaagtaaaattctgaacaaaaccatatttttacacttgggactataatgtttaaacctacaaattgtacactcacagagtcaaagttgatcaatcctatagttaatttagatttagcaaaaacatataatctgacaccaacaagaagtgatactactacagtactcaatcacttagtcatgtgctggagggaacaaactaatgtaaattatcacatatattactttcatccactgcagctggcagctcttcccgcataggagcaaccgcacaccaacaacatccagccacatccatctcatcagcactgcatgcatgcaaaatccccaagaaccaattttgtgaccagaccctccctccaagatgcaaccaacagtgccaccaaggcaaatccggattaagcagtagaaaaatacctcgaacagcagggaggacgctgctcatcggcactggggcggcgccatggaggaggttgctcgcctcgcctatcacctgctccctacaccccgtgtgctacagtgggtgggtgcgcggctgtgagcggagaagggcaaggtggtggccattagtacgagctcaccagcatggggtggccgatgaggctgttcagcacggccatcttgcccgccccctgcatgagcagatcagaactggatcagatcgggcgagcacacgagagagcgagcgggcggatcgcggtggcggtggcctatacttacgacgttgccgagcgcgacggcattgacgaaggtggagaggcggcgtggggtggagtcgtcacaggggtcgtcgtcggccagcagcgacgccacctggcgcatcgactccgacagctgcgtgagctcctcgacggcctccatcgtcgccggtgtactcgcgtcccacaccctctccccgcgccggatctcgacggatcgggggctcccgccgctgccgcgatgctccccacccattgagctacccaaactcttcacgttcggcaatttctccgacgcagtccatgggaaagaggaaacgacatgtggggaggaagcggactggatgaggcgaagcagaaagtggaggcggtgaggacagaagaagatgagggattgagcggactgccgcgccgctcccgccgcccgccgtggccgctcccggcccctcccaagcgcgccgccgctggatctgggaagaggagggcgccggccgtcgagcccgccgccgtggccgctgcagacgtcgaccggcccctcccgagcgcgccgcgccgctcccgccctcgccgtcgtcagtgtgagagagagagagagagagaggagaggagagagagcgggagactgagaggag
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| CDS seq | atgggtggggagcatcgcggcagcggcgggagcccccgatccgtcgagatccggcgcggggagagggtgtgggacgcgagtacaccggcgacgatggaggccgtcgaggagctcacgcagctgtcggagtcgatgcgccaggtggcgtcgctgctggccgacgacgacccctgtgacgactccaccccacgccgcctctccaccttcgtcaatgccgtcgcgctcggcaacgtccacacggggtgtagggagcaggtgataggcgaggcgagcaacctcctccatggcgccgccccagtgccgatgagcagcgtcctccctgctgttcgagtgctgatgagatggatgtggctggatgttgttggtgtgcggttgctcctatgcgggaagagctgccagctgcagtggatgaaagtaatatatgtgataatttacattagtttgttccctccagcacatgactaa
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| Protein seq | MGGEHRGSGGSPRSVEIRRGERVWDASTPATMEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVHTGCREQVIGEASNLLHGAAPVPMSSVLPAVRVLMRWMWLDVVGVRLLLCGKSCQLQWMKVIYVIIYISLFPPAHD |
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| Function | Dynamin-2A [UniProtKB/Swiss-Prot:Q9SE83] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0033350 | OsCMeo_03g0033350.01 | Chr03 | 31407209 | 31408444 | - | NAM | ||
| CDS seq | atgggtggggagcatcgcggcagcggcgggagcccccgatccgtcgagatccggcgcggggagagggtgtgggacgcgagtacaccggcgacgatggaggccgtcgaggagctcacgcagctgtcggagtcgatgcgccaggtggcgtcgctgctggccgacgacgacccctgtgacgactccaccccacgccgcctctccaccttcgtcaatgccgtcgcgctcggcaacgtccacacggggtgtagggagcaggtgataggcgaggcgagcaacctcctccatggcgccgccccagtgccgatgagcagcgtcctccctgctgttcgagtgctgatgagatggatgtggctggatgttgttggtgtgcggttgctcctatgcgggaagagctgccagctgcagtggatgaaagtaatatatgtgataatttacattagtttgttccctccagcacatgactaa
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| Protein seq | MGGEHRGSGGSPRSVEIRRGERVWDASTPATMEAVEELTQLSESMRQVASLLADDDPCDDSTPRRLSTFVNAVALGNVHTGCREQVIGEASNLLHGAAPVPMSSVLPAVRVLMRWMWLDVVGVRLLLCGKSCQLQWMKVIYVIIYISLFPPAHD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0033350 | OsCMeo_03g0033350.02 | Chr03 | 31406586 | 31408786 | - | IsoSeq | ||
| CDS seq | ctcctctcagtctcccgctctctctcctctcctctctctctctctctctctcacactgacgacggcgagggcgggagcggcgcggcgcgctcgggaggggccggtcgacgtctgcagcggccacggcggcgggctcgacggccggcgccctcctcttcccagatccagcggcggcgcgcttgggaggggccgggagcggccacggcgggcggcgggagcggcgcggcagtccgctcaatccctcatcttcttctgtcctcaccgcctccactttctgcttcgcctcatccagtccgcttcctccccacatgtcgtttcctctttcccatggactgcgtcggagaaattgccgaacgtgaagagttt
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| Protein seq | LLSVSRSLSSPLSLSLSHTDDGEGGSGAARSGGAGRRLQRPRRRARRPAPSSSQIQRRRAWEGPGAATAGGGSGAAVRSIPHLLLSSPPPLSASPHPVRFLPTCRFLFPMDCVGEIAEREEF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 31407970 | 31408177 | - | OsCMeo_03g0033350.02 | OsCMeo_03g0033350.01,OsCMeo_03g0033350.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.220824 | 2.387488 | 7.767614 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52230 | RBH | 2.939435 | 3.105545 | 0.435234 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0732200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033580 | RBH | 1.527886 | 1.874379 | 8.047219 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033280 | RBH | 0.130554 | 2.375718 | 2.015102 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0004680 | RBH | 2.259368 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033270 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0511100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0033040 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0512000 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033510 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033500 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033250 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033230 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033240 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G033000 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032840 | RBH | 0.0 | 0.0 | 0.0 |
