Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0033210 | OGI:03083380 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:31275311-31277225 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aggctaatatgatactgatagtactattacgaaaggaacacattttaattgctcttattgttgccttaattggcttgttaacgtgcaaaaaacatgcacttgaccggccactataggtagctaactactttatccgtttcacaatgtaagtcattctagcattttccacattcatattaatgttaacgaatctaaatagatatatgtctagattcattaacatcaatataaatatagaaaatgatagaatgacttacattgtgaaacggaggagggagtacccccttgcaaattctcaacgattaaaagaagcaaatcttgaagcgagcaatataatctaattgtacaaaacatcctgagacgatcgattgatggaggagcttgaggtcgtggcgttcagattgatggcgtcgatgatcctcaagatctggtcgagcgcgctcttgtccttgaggatgccggagtgcgacacctcgggcagctcgaccacctccaccacctgctccggcgagtcggaccacgccttgatcggcccgacgaggctgtcgaggttgaccgtcccgtcgccgtcgccgtacaccaccttctccggcccggcctcgaacccgccctccccgtacacgaggctctccacggtgtcgacgcccgtgccgacgaggcacgtcaccggcaccccgggctccggcagcacctcgacgagcggccgtatccgctcccggtacggctccaccccttcggcgaacccgatgtcccggaggaactgcgtcatgttcttggcggagtaggaccggttgtggtgccgcgacaccaccagcgtggtgttcccgaacacccgcggcgccggcagcagccacaggttgctctcggcggtgcgctgctcgtcgcggatgagcgacgcgtcgacgaacggcacgccgagggtgttgcccgacgcgaaggtgagcatctcctgcaccgacccgccccacggcgcggacagcgtcaccagccgcttcacgttcgcggcgcgccacgcgggggggctccgcgccaccatctgcagcgcgtacagcccgcccaggctgtgcgccacgaggatcgccggcctcccgccgttggccgcgcacgccgactccaccagcttcctcagccgctccaggtacgcgctgcccacacgcgacgggtgccccggcccggccagcccgtaccggaagtcgtacggcgcgccgaacaggtcgaacccttcctcgtaccctgccttctccagcgtgctcgccaacacgttcatgtaccccgttagcaacctacacatcccatttgcaatttgcattcgcgtcatcaccaacaacaacaacgcgttgaatgctgatagtagtaagaatcgtacttgaggttggggtcgaggtagcggagggtggaggtggagccgaagtcggagaccctggtctcgacgccgggagcgttgcggtagtcgtcggcgacggagtcgtagaagagggtcatccggtcggcgaagcacctggtgagcggcgccacgacgacggacgggtcgaaccagaggcggaaccacccgccgcggccgcgcaccacgggccacacgcggcacgcgaggctcgacggggcgtactcctccgtcagccgcgcctccagctggttcccgccggcgccggggatcaggatcaccgggtgcagctgctgctgcttctcacgccgccgcgcgccgccgccgccgcccgccgacgcgcagcagcacgggctcagcgtggacagcagcatggccgccgcgaggagcacgaccgcacgagccaccgatgatgacgacggcctccccaccaccatgatgccaccgtgtgaccactgatcgatccaaccctgttttttttttggttccgtttgtctcttttgctgctctggatttggtgattcctgcttcgtg
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| CDS seq | atggtggtggggaggccgtcgtcatcatcggtggctcgtgcggtcgtgctcctcgcggcggccatgctgctgtccacgctgagcccgtgctgctgcgcgtcggcgggcggcggcggcggcgcgcggcggcgtgagaagcagcagcagctgcacccggtgatcctgatccccggcgccggcgggaaccagctggaggcgcggctgacggaggagtacgccccgtcgagcctcgcgtgccgcgtgtggcccgtggtgcgcggccgcggcgggtggttccgcctctggttcgacccgtccgtcgtcgtggcgccgctcaccaggtgcttcgccgaccggatgaccctcttctacgactccgtcgccgacgactaccgcaacgctcccggcgtcgagaccagggtctccgacttcggctccacctccaccctccgctacctcgaccccaacctcaagttgctaacggggtacatgaacgtgttggcgagcacgctggagaaggcagggtacgaggaagggttcgacctgttcggcgcgccgtacgacttccggtacgggctggccgggccggggcacccgtcgcgtgtgggcagcgcgtacctggagcggctgaggaagctggtggagtcggcgtgcgcggccaacggcgggaggccggcgatcctcgtggcgcacagcctgggcgggctgtacgcgctgcagatggtggcgcggagcccccccgcgtggcgcgccgcgaacgtgaagcggctggtgacgctgtccgcgccgtggggcgggtcggtgcaggagatgctcaccttcgcgtcgggcaacaccctcggcgtgccgttcgtcgacgcgtcgctcatccgcgacgagcagcgcaccgccgagagcaacctgtggctgctgccggcgccgcgggtgttcgggaacaccacgctggtggtgtcgcggcaccacaaccggtcctactccgccaagaacatgacgcagttcctccgggacatcgggttcgccgaaggggtggagccgtaccgggagcggatacggccgctcgtcgaggtgctgccggagcccggggtgccggtgacgtgcctcgtcggcacgggcgtcgacaccgtggagagcctcgtgtacggggagggcgggttcgaggccgggccggagaaggtggtgtacggcgacggcgacgggacggtcaacctcgacagcctcgtcgggccgatcaaggcgtggtccgactcgccggagcaggtggtggaggtggtcgagctgcccgaggtgtcgcactccggcatcctcaaggacaagagcgcgctcgaccagatcttgaggatcatcgacgccatcaatctgaacgccacgacctcaagctcctccatcaatcgatcgtctcaggatgttttgtacaat
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| Protein seq | MVVGRPSSSSVARAVVLLAAAMLLSTLSPCCCASAGGGGGARRREKQQQLHPVILIPGAGGNQLEARLTEEYAPSSLACRVWPVVRGRGGWFRLWFDPSVVVAPLTRCFADRMTLFYDSVADDYRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVLASTLEKAGYEEGFDLFGAPYDFRYGLAGPGHPSRVGSAYLERLRKLVESACAANGGRPAILVAHSLGGLYALQMVARSPPAWRAANVKRLVTLSAPWGGSVQEMLTFASGNTLGVPFVDASLIRDEQRTAESNLWLLPAPRVFGNTTLVVSRHHNRSYSAKNMTQFLRDIGFAEGVEPYRERIRPLVEVLPEPGVPVTCLVGTGVDTVESLVYGEGGFEAGPEKVVYGDGDGTVNLDSLVGPIKAWSDSPEQVVEVVELPEVSHSGILKDKSALDQILRIIDAINLNATTSSSSINRSSQDVLYN |
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| Function | Lecithin-cholesterol acyltransferase-like 1 [UniProtKB/Swiss-Prot:Q9FZI8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0033210 | OsCMeo_03g0033210.01 | Chr03 | 31275311 | 31277225 | - | NAM | ||
| CDS seq | atggtggtggggaggccgtcgtcatcatcggtggctcgtgcggtcgtgctcctcgcggcggccatgctgctgtccacgctgagcccgtgctgctgcgcgtcggcgggcggcggcggcggcgcgcggcggcgtgagaagcagcagcagctgcacccggtgatcctgatccccggcgccggcgggaaccagctggaggcgcggctgacggaggagtacgccccgtcgagcctcgcgtgccgcgtgtggcccgtggtgcgcggccgcggcgggtggttccgcctctggttcgacccgtccgtcgtcgtggcgccgctcaccaggtgcttcgccgaccggatgaccctcttctacgactccgtcgccgacgactaccgcaacgctcccggcgtcgagaccagggtctccgacttcggctccacctccaccctccgctacctcgaccccaacctcaagttgctaacggggtacatgaacgtgttggcgagcacgctggagaaggcagggtacgaggaagggttcgacctgttcggcgcgccgtacgacttccggtacgggctggccgggccggggcacccgtcgcgtgtgggcagcgcgtacctggagcggctgaggaagctggtggagtcggcgtgcgcggccaacggcgggaggccggcgatcctcgtggcgcacagcctgggcgggctgtacgcgctgcagatggtggcgcggagcccccccgcgtggcgcgccgcgaacgtgaagcggctggtgacgctgtccgcgccgtggggcgggtcggtgcaggagatgctcaccttcgcgtcgggcaacaccctcggcgtgccgttcgtcgacgcgtcgctcatccgcgacgagcagcgcaccgccgagagcaacctgtggctgctgccggcgccgcgggtgttcgggaacaccacgctggtggtgtcgcggcaccacaaccggtcctactccgccaagaacatgacgcagttcctccgggacatcgggttcgccgaaggggtggagccgtaccgggagcggatacggccgctcgtcgaggtgctgccggagcccggggtgccggtgacgtgcctcgtcggcacgggcgtcgacaccgtggagagcctcgtgtacggggagggcgggttcgaggccgggccggagaaggtggtgtacggcgacggcgacgggacggtcaacctcgacagcctcgtcgggccgatcaaggcgtggtccgactcgccggagcaggtggtggaggtggtcgagctgcccgaggtgtcgcactccggcatcctcaaggacaagagcgcgctcgaccagatcttgaggatcatcgacgccatcaatctgaacgccacgacctcaagctcctccatcaatcgatcgtctcaggatgttttgtacaat
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| Protein seq | MVVGRPSSSSVARAVVLLAAAMLLSTLSPCCCASAGGGGGARRREKQQQLHPVILIPGAGGNQLEARLTEEYAPSSLACRVWPVVRGRGGWFRLWFDPSVVVAPLTRCFADRMTLFYDSVADDYRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVLASTLEKAGYEEGFDLFGAPYDFRYGLAGPGHPSRVGSAYLERLRKLVESACAANGGRPAILVAHSLGGLYALQMVARSPPAWRAANVKRLVTLSAPWGGSVQEMLTFASGNTLGVPFVDASLIRDEQRTAESNLWLLPAPRVFGNTTLVVSRHHNRSYSAKNMTQFLRDIGFAEGVEPYRERIRPLVEVLPEPGVPVTCLVGTGVDTVESLVYGEGGFEAGPEKVVYGDGDGTVNLDSLVGPIKAWSDSPEQVVEVVELPEVSHSGILKDKSALDQILRIIDAINLNATTSSSSINRSSQDVLYN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.788606 | 0.0 | 1.327153 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0730000 | RBH | 1.047194 | 0.612165 | 0.859219 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52010 | RBH | 0.697809 | 0.391806 | 0.214434 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0730000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0033440 | RBH | 0.0 | 0.0 | 0.859727 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0033140 | RBH | 0.188005 | 0.0 | 0.347721 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009760 | RBH | 0.553775 | 0.0 | 1.305913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0033520 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0033130 | RBH | 2.771234 | 0.000000 | 0.750834 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0509100 | RBH | 0.6051565 | 0.0885965 | 0.0307855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0032890 | RBH | 0.0 | 0.0 | 0.063758 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0510400 | RBH | 8.5316555 | 0.1302985 | 0.8747375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0033360 | RBH | 0.212321 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0033350 | RBH | 0.465246 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0033120 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0033080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0033080 | RBH | 0.183238 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G032860 | RBH | 0.285546 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0032700 | RBH | 0.570953 | 0.0 | 0.426866 |
