Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0030900 | OGI:03078920 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:29405050-29408246 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccggcgctgctcccgcgcctcctcaaggccggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatcacctacaagaagcgcgtcccggtggtcgccggcggcgatcccgacggcaagtcggcggcgatcccgacgcggcggcggcggcggaaggcgctctcccggatcgtcgccgacaccagcaacgtcggcggctgcggtccgagccaccgcctcctccgcgacatgggcgtcgccgcgcggtcgctccaggcgctcgtcgccttcctcaccaactacttcccctacctccacacctgtgaggcgctggagtatctccggctggccgacgccgacctctccgtcgccgtgcggctcatcgagcaggaccgcagctctgacgccttcagcttcgcctcgctgaccaccgagacagccctcacttgcgccgccattgctgggtggcacccaaaccccaaatcccttgtcgagaggttgtattccatcgcttctcagattggggaggcttccaatctcctaagcatggaaggttgcctctcgtgcagagccgtcaagaacatcagcagattggtgaagcaccagcaacaagaaccagtggaccttgttggagctacctttcttcctcggtcacttgagattaaggagaagcagccgccgtttgtgcggatgaaatcgttgaagagcatcctgcttgacaagatctatggattgtaccttgatgttattgcctgcctgccgatggatggcttgcgaatgcgctaccacagggggctcctcaaggccggccactgctatggcccctttgagaaccctgtgcacaacattgtcctcaacacagtttggtatgagaccatgtttccaccacaagaggaggtttcagtgcagatgacatgctcaagaagccttgttcgtgtcgcgtgccgctccctcaatgctcttgttgcatacctccgcgcttgcttttgcacaatctctgaacagcaggctatgcgttacctgttcttgacgggcgccaatctttggggagcggttgaaatggcaaggcaagaatgccatgctgagagaaacatgttgggcctagaccttgcttgcatggttgcagccaccgcagcacatcatcctgatcctgatgcactagtgaagtttttcatgtcaaccttttccatgaagccccttcccctgcagacagatccatttatgtttcaaactggtgggattttaaatgtgcagctcctcgtgcacaatctgatgcgattctgcccctcttcctgtggttcagttcagacagttcctgtactctctgagagggcctccatgactttgtcgtgcattcaggaagagttcaaggctgagcaaagttttatttgtgggaaggttaatgatgcactgaagaaatacaaccagaggactagggtatgtccgttcaccccttcagttttcgaccattaccaaaaatgtcaatatcaagattatctaattcacttgtataaacttctgaatcatagggacttgagtatgagctacatgttatctgtggcttgaattcacacatagttaattatactatgtttggccgacattatggacctggatatagccggcatcgatccaaatctcagtattctcacgtcaactttttggcgagcccaagagatttgcattcttctcagacagtccccatacttttttttgctgagtgctgcaacaaggaaggcgtgatcgatgaactgacctgctgtccagtcatggggcatcctggtacactctccttccatttgagtattgctacatcatatgatgttagcgtgttacagatgtttctttattctatgtgttgagtttcaccatggcgttgtgaaatcgactgaaaagattttcattacgctgcagaacttgacttgaaaagaacaaaaaggacatacatgtgttgatttgcatggtttcttttttttaattaaaagagatgccacagaaattaattcaatcaaacttccaagattgtttggtggggtcatgcctagaattgttcaaaccaagcaatgtttttggaagtagaattctgctgtttgctccaaaatgttagtaacaactaaaacgtgaatctatgtttaatctcagacattgtctgaggtgatataaatcaatttgcttgatcatttagtgctaacaatggtgtcagtacagaactacagattgaccatgatgagcaactccatgactgtatcgccttgacagtttccaacgatggcactaactaattcatactcagtccttgtctccttaacatcattgtcatataaaaaacattgtgaaatacagcacaatttccattgatcatttcctctaataacaaagttagttagcttcatccacattcaaaacatttatccttatctttacatgtgtatacctttactgctttgctaaatgctgctgtcactgatgtatccttatcttctgcaagctatgatatagtatttttttttcttcctctattacgataactgattgccattttttcccttgtttatttttgttaaaaggtcgttgttatcattgtgagtgtgaaggggctaagattgtccatccagatctagagaagtacaatggccgcactgactttctggaaatggctcgcgataaatcaagtggcacgacaactgaagatgttatctctcgttgcgagtatcttcatgatgctgtggatatatgtgaggaggattgcgtctgttttgatgccagttgggatgtcgagtgtgcagagttcttgaattcccgtgctgctaacaagattagactggagtagtactaacacaggagtattctctgtaatacctatacgcagtcatgagtcatggagtcgaacaatatatctactactccctccgtcctataatataagagattttgagtttttacttgcactgtttgatcactcgtcttattcaaaaaattttggaattattatttattttttttaaattactttattatccaaagtactttaagcacaacttttcgttctttatatttgcacaaattttttgaataagacgagtggtcaaacaatgtaagcaaaaatttaaaatctcttatattatgggacgggggtagtagatcactagaaaccttgcatatgtcatcttcatctatattattaatttgtaccgatgtgg
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| CDS seq | atgccggcgctgctcccgcgcctcctcaaggccggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatcacctacaagaagcgcgtcccggtggtcgccggcggcgatcccgacggcaagtcggcggcgatcccgacgcggcggcggcggcggaaggcgctctcccggatcgtcgccgacaccagcaacgtcggcggctgcggtccgagccaccgcctcctccgcgacatgggcgtcgccgcgcggtcgctccaggcgctcgtcgccttcctcaccaactacttcccctacctccacacctgtgaggcgctggagtatctccggctggccgacgccgacctctccgtcgccgtgcggctcatcgagcaggaccgcagctctgacgccttcagcttcgcctcgctgaccaccgagacagccctcacttgcgccgccattgctgggtggcacccaaaccccaaatcccttgtcgagaggttgtattccatcgcttctcagattggggaggcttccaatctcctaagcatggaaggttgcctctcgtgcagagccgtcaagaacatcagcagattggtgaagcaccagcaacaagaaccagtggaccttgttggagctacctttcttcctcggtcacttgagattaaggagaagcagccgccgtttgtgcggatgaaatcgttgaagagcatcctgcttgacaagatctatggattgtaccttgatgttattgcctgcctgccgatggatggcttgcgaatgcgctaccacagggggctcctcaaggccggccactgctatggcccctttgagaaccctgtgcacaacattgtcctcaacacagtttggtatgagaccatgtttccaccacaagaggaggtttcagtgcagatgacatgctcaagaagccttgttcgtgtcgcgtgccgctccctcaatgctcttgttgcatacctccgcgcttgcttttgcacaatctctgaacagcaggctatgcgttacctgttcttgacgggcgccaatctttggggagcggttgaaatggcaaggcaagaatgccatgctgagagaaacatgttgggcctagaccttgcttgcatggttgcagccaccgcagcacatcatcctgatcctgatgcactagtgaagtttttcatgtcaaccttttccatgaagccccttcccctgcagacagatccatttatgtttcaaactggtgggattttaaatgtgcagctcctcgtgcacaatctgatgcgattctgcccctcttcctgtggttcagttcagacagttcctgtactctctgagagggcctccatgactttgtcgtgcattcaggaagagttcaaggctgagcaaagttttatttgtgggaaggttaatgatgcactgaagaaatacaaccagaggactaggggacttgagtatgagctacatgttatctgtggcttgaattcacacatagttaattatactatgtttggccgacattatggacctggatatagccggcatcgatccaaatctcagtattctcacgtcaactttttggcgagcccaagagatttgcattcttctcagacagtccccatacttttttttgctgagtgctgcaacaaggaaggcgtgatcgatgaactgacctgctgtccagtcatggggcatcctggtcgttgttatcattgtgagtgtgaaggggctaagattgtccatccagatctagagaagtacaatggccgcactgactttctggaaatggctcgcgataaatcaagtggcacgacaactgaagatgttatctctcgttgcgagtatcttcatgatgctgtggatatatgtgaggaggattgcgtctgttttgatgccagttgggatgtcgagtgtgcagagttcttgaattcccgtgctgctaacaagattagactggag
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| Protein seq | MPALLPRLLKAGLCVGFLDPVSNIVVNTITYKKRVPVVAGGDPDGKSAAIPTRRRRRKALSRIVADTSNVGGCGPSHRLLRDMGVAARSLQALVAFLTNYFPYLHTCEALEYLRLADADLSVAVRLIEQDRSSDAFSFASLTTETALTCAAIAGWHPNPKSLVERLYSIASQIGEASNLLSMEGCLSCRAVKNISRLVKHQQQEPVDLVGATFLPRSLEIKEKQPPFVRMKSLKSILLDKIYGLYLDVIACLPMDGLRMRYHRGLLKAGHCYGPFENPVHNIVLNTVWYETMFPPQEEVSVQMTCSRSLVRVACRSLNALVAYLRACFCTISEQQAMRYLFLTGANLWGAVEMARQECHAERNMLGLDLACMVAATAAHHPDPDALVKFFMSTFSMKPLPLQTDPFMFQTGGILNVQLLVHNLMRFCPSSCGSVQTVPVLSERASMTLSCIQEEFKAEQSFICGKVNDALKKYNQRTRGLEYELHVICGLNSHIVNYTMFGRHYGPGYSRHRSKSQYSHVNFLASPRDLHSSQTVPILFFAECCNKEGVIDELTCCPVMGHPGRCYHCECEGAKIVHPDLEKYNGRTDFLEMARDKSSGTTTEDVISRCEYLHDAVDICEEDCVCFDASWDVECAEFLNSRAANKIRLE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0030900 | OsCMeo_03g0030900.01 | Chr03 | 29405050 | 29408246 | + | NAM | ||
| CDS seq | atgccggcgctgctcccgcgcctcctcaaggccggcctctgcgtcggcttcctggaccccgtctccaacatcgtcgtcaacaccatcacctacaagaagcgcgtcccggtggtcgccggcggcgatcccgacggcaagtcggcggcgatcccgacgcggcggcggcggcggaaggcgctctcccggatcgtcgccgacaccagcaacgtcggcggctgcggtccgagccaccgcctcctccgcgacatgggcgtcgccgcgcggtcgctccaggcgctcgtcgccttcctcaccaactacttcccctacctccacacctgtgaggcgctggagtatctccggctggccgacgccgacctctccgtcgccgtgcggctcatcgagcaggaccgcagctctgacgccttcagcttcgcctcgctgaccaccgagacagccctcacttgcgccgccattgctgggtggcacccaaaccccaaatcccttgtcgagaggttgtattccatcgcttctcagattggggaggcttccaatctcctaagcatggaaggttgcctctcgtgcagagccgtcaagaacatcagcagattggtgaagcaccagcaacaagaaccagtggaccttgttggagctacctttcttcctcggtcacttgagattaaggagaagcagccgccgtttgtgcggatgaaatcgttgaagagcatcctgcttgacaagatctatggattgtaccttgatgttattgcctgcctgccgatggatggcttgcgaatgcgctaccacagggggctcctcaaggccggccactgctatggcccctttgagaaccctgtgcacaacattgtcctcaacacagtttggtatgagaccatgtttccaccacaagaggaggtttcagtgcagatgacatgctcaagaagccttgttcgtgtcgcgtgccgctccctcaatgctcttgttgcatacctccgcgcttgcttttgcacaatctctgaacagcaggctatgcgttacctgttcttgacgggcgccaatctttggggagcggttgaaatggcaaggcaagaatgccatgctgagagaaacatgttgggcctagaccttgcttgcatggttgcagccaccgcagcacatcatcctgatcctgatgcactagtgaagtttttcatgtcaaccttttccatgaagccccttcccctgcagacagatccatttatgtttcaaactggtgggattttaaatgtgcagctcctcgtgcacaatctgatgcgattctgcccctcttcctgtggttcagttcagacagttcctgtactctctgagagggcctccatgactttgtcgtgcattcaggaagagttcaaggctgagcaaagttttatttgtgggaaggttaatgatgcactgaagaaatacaaccagaggactaggggacttgagtatgagctacatgttatctgtggcttgaattcacacatagttaattatactatgtttggccgacattatggacctggatatagccggcatcgatccaaatctcagtattctcacgtcaactttttggcgagcccaagagatttgcattcttctcagacagtccccatacttttttttgctgagtgctgcaacaaggaaggcgtgatcgatgaactgacctgctgtccagtcatggggcatcctggtcgttgttatcattgtgagtgtgaaggggctaagattgtccatccagatctagagaagtacaatggccgcactgactttctggaaatggctcgcgataaatcaagtggcacgacaactgaagatgttatctctcgttgcgagtatcttcatgatgctgtggatatatgtgaggaggattgcgtctgttttgatgccagttgggatgtcgagtgtgcagagttcttgaattcccgtgctgctaacaagattagactggag
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| Protein seq | MPALLPRLLKAGLCVGFLDPVSNIVVNTITYKKRVPVVAGGDPDGKSAAIPTRRRRRKALSRIVADTSNVGGCGPSHRLLRDMGVAARSLQALVAFLTNYFPYLHTCEALEYLRLADADLSVAVRLIEQDRSSDAFSFASLTTETALTCAAIAGWHPNPKSLVERLYSIASQIGEASNLLSMEGCLSCRAVKNISRLVKHQQQEPVDLVGATFLPRSLEIKEKQPPFVRMKSLKSILLDKIYGLYLDVIACLPMDGLRMRYHRGLLKAGHCYGPFENPVHNIVLNTVWYETMFPPQEEVSVQMTCSRSLVRVACRSLNALVAYLRACFCTISEQQAMRYLFLTGANLWGAVEMARQECHAERNMLGLDLACMVAATAAHHPDPDALVKFFMSTFSMKPLPLQTDPFMFQTGGILNVQLLVHNLMRFCPSSCGSVQTVPVLSERASMTLSCIQEEFKAEQSFICGKVNDALKKYNQRTRGLEYELHVICGLNSHIVNYTMFGRHYGPGYSRHRSKSQYSHVNFLASPRDLHSSQTVPILFFAECCNKEGVIDELTCCPVMGHPGRCYHCECEGAKIVHPDLEKYNGRTDFLEMARDKSSGTTTEDVISRCEYLHDAVDICEEDCVCFDASWDVECAEFLNSRAANKIRLE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.136704 | 0.0 | 1.139323 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0697833 | RBH | 0.562447 | 0.348005 | 0.826862 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g49126 | RBH | 0.413963 | 0.215014 | 0.173021 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0697833 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0031100 | RBH | 0.082276 | 0.0 | 0.274669 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0030810 | RBH | 0.055084 | 0.0 | 0.780080 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0030890 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0031000 | RBH | 0.025071 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0030650 | RBH | 0.0 | 0.0 | 3.001868 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0481800 | RBH | 0.3813425 | 0.227574 | 2.78571 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0030340 | RBH | 0.041741 | 0.0 | 0.136903 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0482000 | RBH | 0.301239 | 0.396351 | 3.174567 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030720 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0030780 | RBH | 0.000000 | 2.678391 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0030730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0030520 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0030550 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G030490 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0030400 | RBH | 0.000000 | 0.0 | 0.339938 |
