Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0030740 | OGI:03078420 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:29248081-29256376 | ||||||||
| Gene Symbol | VALRS1, OsValRS1, ValRS1 | ||||||||||
| DNA seq | acacgttcgctcttaccccaaaacccttcgccctcttgctgctgcgccgccgccgcacgcgattcctcctgctcccgtcggcggaagctaatcccccaccatcgcctgcctgccgcgtgcgccgatctccatccttgagcagcagcgcgcgggcgtcctgctgcttccgccgcatcctcgctctccggtgagcatccgtcctcttcgtcatcccatccctccctacccacacacctttttctcggattcgcgttaaccctagcttctcttctagcaccggaagcttttcaatttgccttaactttactaatgacagtttatttttgttaatcaaaaagtttggggttgttcaagtgaagcaccatgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggtatttgatcaaacgctatcttcttaattatattcatttctttggcctagattacttctctgtcaccagctggactcaaaatggtcattgattttcacaatgataaaatccaaggtgttcactactattgcacatttgcacatgacaaaagtcactgatgtgtgaactgttctgcgcacaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggtttgaacatgattagtgaatttctatgtgactgaatgtaaaaccagatatctactcggtgaaatgctctgtagagatgggtcttcttctattttcgtgctgatttacttttatgtaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcgtaagatgctaccatgtttttctctatcttataattcatacaataagaaaggcctactgaacttctgcatgcatttgtttcctcccaccttaatgcagatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagtaagtggatcatacttcgaagtttagagagctgcttttcatggaatcaattatgtattttctacatgcagcaaattaccccatatatgttgctgccaaacagctaaattatttcttttcaggttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggtacatcattattcttgtggagacatatccatagtaacattatcgatgttagctaaacattggataatgattttaacgtccctgcatttaagcaatgcaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggtctatatcttcgatttgtttcaccatcatctgaaatttatcttacgaaacattcatctgcagataatatagattacttgatatatctttgtcgctattactttctattaaacatactaacaatttggtcagtcgccaatgggcaaacacatggcagcattggttatattaatttacaaaagctccaaatggaatgctgtcctttttctaaaatatcttttctcaaaataaattgtcaacacatgttgctcaattttgttcaccgtatcgttatttcccctctaaaccaataatcatttttgcctcttaaatttctctgatctcatgtatatcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagtaagcattatttttcctgaacaaaattttatgcctgttaactctgtattcttttgattataaatgagcaatttattaccattatcatatgaatatcgaaatggatccatgttgttagacgttatggaaattgtggtgagcatataatattatgcattcaaaggatagtgttctttacttgtttagtttcactccccatgtgtctacctttctcttgtttattctgttttatctatcatattctggacaggttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgaggtacatttactactttctgtagttaggagatagtatgagtatacttatgacaatacttgagcaataagttattttatactacctccatcctagaatataagaagttttagagttggacacggttattaagaaaataagtagaattaaatagaaagagcttgtgattggttaagaagtgaaggtaggtgggAaaagtgaatggtggagggttgtgattggttgggaagggaatgttggtggagaagttgttatattttgggacaaatcctgagtgctaaaagttgttatattttgggacggagggagtagttcttattctgaatattaacttcccctctacctttgcaacagtgttttacaatggataaaccaagatcaaaggctgtaactgaagcttttgtcaggttgtacaaacaaggcctgatatataggtcagttccatcaccttattttgttgttagagttgaacatttgttccttctattgattgcaccattatgtttttacctgtttgcttctatacagttgattttggttgttgtttgccatcttagttttatttttcctcttatggatggcatgcttctatacagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgttgagactttttattgtgtatgatggtggttgcaattgcacgcataactaaaattgatctgtttgtttgaaatttctgttttgttaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaaggtaggagctgatgctgacttcttgactatctctgtttaatttaatctacttggatcttctgcatacacgtttgcttatcttatatgcagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaaggtactgctagatttgctaaatcatcctttcccagcatcttgtgatccaatctctaaacatttctttggactattgctggtttgttatggatttatgcaccattgcaaaatagtatcagagtgaaaagcacttaccatgaatgttttagggcattcttgcatatttatatttttctataactcagtccaaagaataaatctgatagtgtaagcgataaggagttagtggaatatagcatgaaggtttcctacttttgacattgtcctgtcccccatcctctctcatttttctattagtgggtctcttagcacagtattacttttatgagaaataagatgtcttggtttctgtagacatcagtggttctattaaatctcgaatcctgcattttgttaatgcttttatggtcgggtatctataacaactatgtgtaaaacagcattgaactgtttatgtaaccggataatctcaccaattttgttctgtcagctttctttccatttggtttgctgtgggttttgttcaagtattattgaagcttgattcttaccactttatgttctgcaatataagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtataggtaatgtctatcaccttctcatttgtcagttgagaattatctcacctattattgcaaatggcatcatatataggcaatggaattagaaggaaaataatccatccattgtcatgcccttacagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtaatggcaattgcatggatgtgcttcctgtgccattaaaactgtattataacattttagcagttcaatctatacatttcatccagtttttacactattgtctttcatacaacagtataattctgatcgaaattcaaacatgaaaaaatctatcttcaaattgctagctgtggatgttataatgaaggagaagtctatttgagactacttcgttcgtgagcatcattattttctgctctgccatttgtcttcaataggtcacactaatttcatctgaatgtactctagtagcttgttaattttggacatatattacatttttgtcaacatgctacttcgactaggcacaatacatggttgattgggaactatcctcagctgaacacacaagtttaccttttatttcagattttaaaatctattatttttcttagtttgatttttgaattacttcgtaacctaagacgtgtttaactgcaactagaagtattacttacactggtaagtgaggcgattctagctgaacacgcttaaattggggctctgctctcttgctcaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcaggttgtaattacacccatttcagtttctgttgtattatgcttgcaattcatctcctatggatttctctcttggttcacagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggtattatcttaaagaagacataatttgtgtttggaaatataattgaaccaatatataagatagcacacatttaccaatggagacatatctttctttatgacaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagaggtgcgtgtataatcatctatcttaatttgtgctattcctgtaatatacatgatgtgttgtcagattcattttgttcaatacgaaagcgtaatatatctcttgcttatttttccacaaacagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaaggttctgccttaaacttctgtactattatgtatgcatgcatttctctattagcaaaatatttagattgaaatttatactgaaacctgggatggagtattattagtttagtacctcataaaacttatgtttcttaccatccatgcgtttgaaaattccccaaaagtcctgcctgagttgaaagatcttgacagaagaactgatctgatatttgaaaccattcagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagtaagcgtacttatgttatctcaaaatatcttgaatgaagatttgcctatgtttcactgttcccctgcgctagaaggatataacttactattaccatgcacgcaggctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattgacccagaaatctctgatgtgattttgaagatgcacatttgttgaagtttatctcaaattttttgcatggttaccttaatcatacctgaatgcccaggtactcatttttatattttgtagcttgaagagtatattcacagcattatacttttgtagtttttggttgtccaatcttccgtttgaaaatattttttgtggtgttgatttttcttacctgcgccgcttcggcatcagaatcatgggccgcttgcttttatcatgtccttattcgttctcttgtgttttatgttcatgtcagagtgtgcgtgcatgcaaggggtatgttggataattcttttagtacgttacgtatatatacacgagtttcttataattaagtgtaccagttaatcaaactttccaggggtgaattgctaacgtgtgttgcttcttgcatgtgcatctggaagttattgcattttcctttttttttttgaactaaatagcgaggagaagagccattcattagcaattgaatttgacatgtaaagttaggattgtttataccttattgtgcataataatgtgctagttcacatgcacagctgtctatgctatggaagagaagaaatgcagcattcaaaagagatgcctacccgatacaatcttcctatagtaaagttgttacttcctgcttgtggtattgttagcaagtcctgcaagtctcaaatgacaagacagtgctaagcaacttgtatcatatcgttgatttgctgctctgctttcggggttccagggatgttacttgtttggcatggcaccagcttccagggagttggagcccagcgagtctaggttacttcacagctctttagaaattggagttctatcaaacggacttatttttcagtgttttttttccttagtggagaatgcttcatgcttatttttattgtggaaaaccgttctTGCtgcttttttttttgtgattatatgtcactgttttaacc
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| CDS seq | atgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgagttgattttggttgttgtttgccatcttagttttatttttcctcttatggatggcatgcttctatacagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtatagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattga
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| Protein seq | MSSVTPAADAQPLDEKELERKLKKDQKAKEKEEKRLKAKAKEAARLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVEKSWYSWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMSGYNTLWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILNQLRRLGASLDWSRELILVVVCHLSFIFPLMDGMLLYRDYRLVNWDCTLRTAISDVEVDYLEIKEETMLKVPGYNTTVQFGVLISFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPEDGRYKHLHGRYAIHPFNGRKLKIICDAELVDPTFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINNNGGAQFVGIPRFTARVAVIEALKAKGLYKETKKNEMSLGVCSRTNDVVEPMIKPQWFVNCNTMAQAGIDAVRSKRIEIIPQQYEQDWYRWLANIRDWCISRQLWWGHRVPAWYVILEDDQEKILGSANGRWIVARNESEANLEAQQKYPGKKFELHQDPDVLDTWFSSGLFPLTVLGWPDDTADLKAFYPGSVLETGHDIIFFWVARMVMMGMQLGGDVPFEKVYLHPMIRDAHGRKMSKSLGNVIDPVDVINGISLDGLLKRLKEGNLDPNELNIATEGKKKDFPDGIAECGTDALRFALVSYTSQSDKINLDIKRVVGYRQWCNKLWNAIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAIGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNDSQEFESARAASRDALWVCLDTGLRLLHPFMPYVTEELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIALDTINKLRSLKPPSDTNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETPPDCATAVVNKDLSVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQKMEASGYKEKAPQNVQEEDMRKLTSFFEQLEIISEAEKKLDAKTGNN |
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| Function | Valine--tRNA ligase, mitochondrial 1 [UniProtKB/Swiss-Prot:P93736] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0030740 | OsCMeo_03g0030740.02 | Chr03 | 29248081 | 29256376 | + | NAM | ||
| CDS seq | atgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgagttgattttggttgttgtttgccatcttagttttatttttcctcttatggatggcatgcttctatacagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtatagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattga
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| Protein seq | MSSVTPAADAQPLDEKELERKLKKDQKAKEKEEKRLKAKAKEAARLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVEKSWYSWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMSGYNTLWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILNQLRRLGASLDWSRELILVVVCHLSFIFPLMDGMLLYRDYRLVNWDCTLRTAISDVEVDYLEIKEETMLKVPGYNTTVQFGVLISFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPEDGRYKHLHGRYAIHPFNGRKLKIICDAELVDPTFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINNNGGAQFVGIPRFTARVAVIEALKAKGLYKETKKNEMSLGVCSRTNDVVEPMIKPQWFVNCNTMAQAGIDAVRSKRIEIIPQQYEQDWYRWLANIRDWCISRQLWWGHRVPAWYVILEDDQEKILGSANGRWIVARNESEANLEAQQKYPGKKFELHQDPDVLDTWFSSGLFPLTVLGWPDDTADLKAFYPGSVLETGHDIIFFWVARMVMMGMQLGGDVPFEKVYLHPMIRDAHGRKMSKSLGNVIDPVDVINGISLDGLLKRLKEGNLDPNELNIATEGKKKDFPDGIAECGTDALRFALVSYTSQSDKINLDIKRVVGYRQWCNKLWNAIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAIGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNDSQEFESARAASRDALWVCLDTGLRLLHPFMPYVTEELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIALDTINKLRSLKPPSDTNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETPPDCATAVVNKDLSVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQKMEASGYKEKAPQNVQEEDMRKLTSFFEQLEIISEAEKKLDAKTGNN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0030740 | OsCMeo_03g0030740.01 | Chr03 | 29248081 | 29256376 | + | NAM | ||
| CDS seq | atgtccagcgttacccctgctgccgacgcgcagccactcgatgagaaagagctggagcggaagctgaagaaagatcagaaggcaaaagagaaagaggaaaaaaggcttaaggcgaaggcaaaggaggcggctaggctccaggcacaagcagcttcagatggacctaagaaaagcgagaagaagcaaaggaagaaagctgtggaggatgagaatcctgaggatttcattgatccagacactcctcatgggcagaagaaatttcttgcatctcaaatggccaagcagtatagcccaactgctgttgagaaatcatggtattcctggtgggaatcatcaggatattttggggcagatgctgcaagctcaaagccaccatttgttatagttttgccacctccaaatgtcactggagcgcttcatataggccatgcacttacggtggctatagaggattccatgatacgctggcggaggatgtcaggttataacactctgtgggttccaggagttgaccatgcaggaatcgctactcaggttgtagtggagaagaagcttatgcgtgaaaggaatttgacaaggcatgacatagggcgtgaagaatttgtatctgaagttctcaaatggaaagatgaatacgggggtaccatattgaatcaattgcgtaggcttggggcctcacttgattggtcccgcgagttgattttggttgttgtttgccatcttagttttatttttcctcttatggatggcatgcttctatacagggattatcgcctcgtgaattgggattgcacccttcgaacagcaatttctgacgtagaggttgattatctagagattaaagaggaaactatgttaaaggttcctggttataatacaactgtacaattcggtgtgttgatctcttttgcatatccacttgaggaaggattgggtgagattattgtcgcaacaacaagaatcgaaacaatgcttggggatacagccattgctgttcaccctgaggatggcagatacaagcatctgcatggtaggtatgcaatccatcccttcaatggccgaaagctcaaaataatctgtgatgctgagttagtggatcccactttcggtactggggctgtcaagattacacctgcccatgatccaaatgattttgaggttggaaagcgacacaaccttgagttcatcaatatcttcacagatgatggaaaaataaacaacaatggaggtgcacaatttgtaggaattccaagatttactgctcgagttgctgttattgaggcactgaaggcaaagggcttgtacaaggagacaaagaagaacgaaatgagtttgggtgtttgttcaagaactaatgatgtggtggagcctatgataaaaccccaatggtttgttaattgcaataccatggcacaagcaggtattgatgctgtaaggtccaaaagaattgagattattccacaacagtatgagcaagactggtatagatggcttgcaaatatacgtgattggtgtatttcgaggcagctttggtggggacatcgcgttcctgcttggtatgttatactagaagatgatcaagagaaaattctgggttctgctaatggccgttggattgttgctagaaacgaaagtgaagcaaacctggaggcacagcaaaagtatcctgggaagaaattcgagttacatcaagatcctgatgtgttggatacatggttttcatctggtctcttcccattaaccgtacttggttggccagatgatacagctgaccttaaagctttctaccctggttcggtgctagaaactggacatgacattatcttcttttgggtagcacggatggtgatgatggggatgcaacttggtggcgatgtgccatttgagaaggtttatttgcaccctatgatacgtgatgctcatggacgcaaaatgtccaagtcgcttggtaatgtcattgatcccgttgatgtgataaatggcatttcactggatggtctcctcaaacgtttgaaagaaggcaatctagatccaaatgaattgaacattgcaacagaagggaagaagaaggattttcctgatggcattgctgaatgtggtaccgatgctctccgttttgcactggtttcttacacttcgcagtctgacaagataaacctggatatcaaacgagttgttggatatcgacagtggtgcaataaattatggaatgccattcgttttgcaatgggcaagcttggcaatcattacactccccctgcaactatttctgtaactacaatgccacccatatgcaaatggatattgtcagtacttaataaagctattggcaaaactgtcacctcgttagaagcatacaaattttctgatgctacatctgctatatactcgtggtggcagtaccaactatgtgatgtgttcatagaagctataaagccttacttcttcaatgactctcaagagtttgaatcagcaagagctgcctctagagatgccttatgggtttgcttagacactggtttgcgcttgctccacccattcatgccttatgttacagaagagctctggcagcgtcttcctcagcctaaagattcttgtcggaaagattccattatggtatcagagtacccatctgttgttaaggaatggacggatgataaacttgaaaatgagatagatattgccttagatactatcaacaaactaagatctctgaagccaccatctgatacaaatgagagacgacctgcttttgcactttgccgaggccaagagattactgccaccattcagtgttatcagtctctagttgtgtctctttcttccacatcatctctaaagatcctgacagagaatgatgaaacgccacctgactgtgcaacagctgttgtaaacaaagatttgtctgtataccttcaactccaaggagctctcaatgcagaagttgagcttgaaaagctgaggaaaaagagagaagaaattcaaaagctccaacacgcactgtcacagaaaatggaagcttctggttacaaagagaaggctccacagaatgtccaggaggaggacatgagaaaactcactagtttttttgaacagctagagattatcagtgaagctgaaaagaagctagatgcaaaaactggcaataattga
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| Protein seq | MSSVTPAADAQPLDEKELERKLKKDQKAKEKEEKRLKAKAKEAARLQAQAASDGPKKSEKKQRKKAVEDENPEDFIDPDTPHGQKKFLASQMAKQYSPTAVEKSWYSWWESSGYFGADAASSKPPFVIVLPPPNVTGALHIGHALTVAIEDSMIRWRRMSGYNTLWVPGVDHAGIATQVVVEKKLMRERNLTRHDIGREEFVSEVLKWKDEYGGTILNQLRRLGASLDWSRELILVVVCHLSFIFPLMDGMLLYRDYRLVNWDCTLRTAISDVEVDYLEIKEETMLKVPGYNTTVQFGVLISFAYPLEEGLGEIIVATTRIETMLGDTAIAVHPEDGRYKHLHGRYAIHPFNGRKLKIICDAELVDPTFGTGAVKITPAHDPNDFEVGKRHNLEFINIFTDDGKINNNGGAQFVGIPRFTARVAVIEALKAKGLYKETKKNEMSLGVCSRTNDVVEPMIKPQWFVNCNTMAQAGIDAVRSKRIEIIPQQYEQDWYRWLANIRDWCISRQLWWGHRVPAWYVILEDDQEKILGSANGRWIVARNESEANLEAQQKYPGKKFELHQDPDVLDTWFSSGLFPLTVLGWPDDTADLKAFYPGSVLETGHDIIFFWVARMVMMGMQLGGDVPFEKVYLHPMIRDAHGRKMSKSLGNVIDPVDVINGISLDGLLKRLKEGNLDPNELNIATEGKKKDFPDGIAECGTDALRFALVSYTSQSDKINLDIKRVVGYRQWCNKLWNAIRFAMGKLGNHYTPPATISVTTMPPICKWILSVLNKAIGKTVTSLEAYKFSDATSAIYSWWQYQLCDVFIEAIKPYFFNDSQEFESARAASRDALWVCLDTGLRLLHPFMPYVTEELWQRLPQPKDSCRKDSIMVSEYPSVVKEWTDDKLENEIDIALDTINKLRSLKPPSDTNERRPAFALCRGQEITATIQCYQSLVVSLSSTSSLKILTENDETPPDCATAVVNKDLSVYLQLQGALNAEVELEKLRKKREEIQKLQHALSQKMEASGYKEKAPQNVQEEDMRKLTSFFEQLEIISEAEKKLDAKTGNN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0030740 | OsCMeo_03g0030740.03 | Chr03 | 29248095 | 29255599 | + | IsoSeq | ||
| CDS seq | accccaaaacccttcgccctcttgctgctgcgccgccgccgcacgcgattcctcctgctcccgtcggcggaagctaatcccccaccatcgcctgcctgccgcgtgcgccgatctccatccttgagcagcagcgcgcgggcgtcctgctgcttccgccgcatcctcgctctccgtttggggttgttc |
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| Protein seq | TPKPFALLLLRRRRTRFLLLPSAEANPPPSPACRVRRSPSLSSSARASCCFRRILALRLGLF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 29255224 | 29256376 | + | OsCMeo_03g0030740.02 | OsCMeo_03g0030740.02,OsCMeo_03g0030740.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.801636 | 25.299046 | 24.220139 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0694900 | RBH | 4.272662 | 4.155229 | 15.826392 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g48850 | RBH | 2.494563 | 2.436153 | 3.380564 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0694900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030940 | RBH | 1.902655 | 26.380444 | 11.667475 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0030660 | RBH | 0.421061 | 6.011171 | 7.423925 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001040 | RBH | 0.249847 | 0.626080 | 4.564605 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0030840 | RBH | 0.411265 | 1.092544 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0030510 | RBH | 9.563867 | 49.567490 | 43.161457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0011000 | SBH | 2.6209235 | 6.0246735 | 4.778715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0030180 | RBH | 1.025830 | 2.556088 | 3.226293 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0479300 | RBH | 17.7040275 | 40.37085 | 45.0664805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030560 | RBH | 0.471801 | 0.739458 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0030620 | RBH | 1.343824 | 38.153210 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0030590 | RBH | 7.594736 | 25.535048 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0030380 | RBH | 1.868177 | 5.413131 | 0.086465 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0030390 | RBH | 0.638520 | 9.460209 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G030340 | RBH | 1.648158 | 16.934441 | 7.968836 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0030250 | RBH | 3.811291 | 45.015625 | 22.759327 |
