Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0030290 | OGI:03077440 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:28834719-28839998 | ||||||||
| Gene Symbol | NPF2.4, OsNPF2.4, OsPTR2, PTR2 | ||||||||||
| DNA seq | cctgaaggttcattcaaaactatttcatttacttccttgtgaatcagtcaaacagcaagtagcgatttactaggattgaagattcatttatctttgaattttaaccacttacaagaaaccaacccttttgtttctttccttctctttcctcacccacttaatcctatagattttataattcaagacaccacagatacaaaaatacaagagagaaatgatgaggcagaaaaaaaaaacccagctaaaagcactccaccaattaattatctgccattgacataattaattaaccacccaaacgaacaaacttcacttcacttgcatctcagttggcggctgcccccttgaacctgtaccacttggcgcagatcatgaagtagatgatgttgaagatgccgatgccggcgatcatccagtagaagaggtcgagcctccccttgttgaggtcctgcgccagccagttgctcccggcgccggtggtccggtgcacgatggtgacgaggaacccactgaggtagttccccagcgccaggttgcagaaggcgagcgcgccggccacgctccgcatgtgctccgggatctccttgtagtagaactcgatctggctgatgaggttgaacgcctccgagagccccagcaccatgagctgcggcaccatccacaggctggacatggccgagatggcgCccccggtgatggtcgtccccagcgtcggctgcgtcagcgcgatgtgccgcctccggtcctccaccacggccgacatcaccatcgccaccgtcgacagcgcgatcccgatcccctgccgctgcaggagggtgaggccctcgtccttgcccgtgaccctgcggaggcgcggcacgaggaggcggtcgtagatggggatccacagcgtctgcgccagcatggcgaacaccgtgaacgacgccgcggggatctggaagctccggccgaggtgtcggtcggactgcagcgcggacaacaccacgtaggtcgactgctgcacgacggcgacgtagtagatgatccccgtggaccagacgggcacgatgcggatgaggcacttcacctcctccacctgctgcacgctgcacagcctccacgggttcgacggcgcggcgcccccggcgcgcacgtcgtcggggccggacacgatggccgccttgtcgaggcaccggaactggtccgtgtgcgccagcttggtgacgatggcgctggtgtgcggcgggtcgaacaggtcctgcttggggtccttgggctgcttgagcgaccgcttcctcgccgcggcggcgaacacctggacgatgctggtgaagggggagccctcgggggtgacgcggacgtagagcctggtgcccatgaagaagaggacgcaggcgaggagcatgagcgcggtggggatgccgaggccgatgggccagctgacgttgctctggacgtagatgatgacggtggcggagacgagcatggcggaggtgaaggtgaagtagtaccagttgaagaagctgttgatgccgcgcttgccggactccgtgtgggggtcgaactggtcggcgccgaacggcatgctgcacggccggatccccgccgaccccagcaccaggaacgcgaacgacatgaacagcaccgcgaactgccccgacgtcgccttcgagcacgtctcccccaccccgcactccgccgggtgcagcccgtccgcggcggccgtcatcgtcagcaagaacatgccctgtccgtccatcattggaaggaaaccatgcgttagtacattggagccatcgttattttgcaaacgaaaagtaatttgtgaataaaacttttatatacttgttcttagcgatttaaaagcaaaggttgaaaaataaacttcgatgagaaaacctcaaaatcagcttcaaatttaagattgaaaattcaaattttagttgataagttataagcataagcgaaaaacgagggcctttgaattggatgattatgggctttgagtttcgtgtaataacccatgtgaacttaaatgggccattagttgggccgagttctgtctgcacaaccagtcggcccaaaacaacagatgcatgcgagcacagcacacaaaccgggaaaactgtttaaattaaatttgtaatctgatgatttgaacactcttatggctgattatcagctgtgtgatcctttttttacttaaataataacataaaatttgaaaaaattatccaatataaaattatgttaccgttccaatagaagtgaccttcagaatcaagcagctggcccaccgcccccacgagcaccagcggcgcaagcatcattcgtcagaagtggctctcgctatcaaaccatactattacacgcttagtactactacctaaatggggctcatgattacactacgtcattagtactagtacgtggttggtgatagtcaggttggttatggttagggaggtggtgtgacattgatgccgcgacgtgggcagctcactagtcaattcctggagctttggatggcagcactgactctcacttgggagcatatcgttttcgtgcgagcaagtgcgagaaactaattgatttttttgtacaggtgtaccgaaatgcaagcgcagctaagtactaatggtgtacagtaatgctgatatattccaggaattgggggtgagctagctagctggtcaatgtcgatggccacaccaggacactaccccacttgcgcagttagttggcagtcacctccatacagattgtccggataagatggccggatccccaacctcacttcagcctcaatggctgccactgttcatcatctcattgcactttgcacttggcagcacagcacagagcagaaagttcttatgcttagcctaggccccccaagattctagcacttgtactcctactagatgaaccgtacaaaattactgcaaatccaaacaaaacgcaagagatttccccgttctaactaatagtgtcttgatagtctaatcaggtactattatcagtgtgaaaacatgacataatgtaaccaggttggatcttgggatttcagtgctacggccttccagagtttggccttagaaaaagacaccgttcaagtcaaaacacaactacaaattgaactggacagtggacactgcatctcaccaaccaagcccctgtactacgtagtactattattgttgaacagagttaattaaaacttgaaaattatccgtgttgcatgcctggcaagccaaggcaccgtttggtccccatgttatttttgtactgaaattaatacaggcgaaaggttaaacaaactgaggagaggaagcgagtccacttcaggattcagcacagatcgagatgatccactaacccaatccaaatgctcaacaagttcccttacaaacacagtttcctatgtttaaaacttaaaattagcgacgtgagatccacaaataatacagacccagccaactgcctcgactcctaaataatgcattttttttgcaaaagttcttttttagaaaaagagctttaaaaatcatattattccttttttagaaaaatactaataaatcatatgctaataactaataaaaagagttaacttaactaatcatatgctaataaaccactctgttttccgtgcacgggagattaactctcaaccccatctaacgaacacaacctaagtgactatttggtagagctcaaacttataaatttagcttcaggagttgggtctgaagtggagttgtggatcggtctaaacccagctccacttctttagatcatttcgtgagagcgctctacccaaccccactcctattttagatggagctgaaactttagctgggctccaactacaatagaggtgtagctgaagctattcaaaacagaactaggtgtactactcctatatatttgtacatataattgtaaatatgtccacgtcaaataggccataccttttttcttttacaagaaaactagggtgagcatgcaacaactactagcttagactgatgatgtgttgttgttgtacatgggttatcagaaaaagaaaaccagctgctagtgtgggcagaattaatactgctgcccacaaagatagataaaagtggattatagggcatataatacggattagaagagcgctaatcatgagccactgcgccgctgcaaagtgccgctttggcaaaaggggagcagataatgcagggcacgaggctaaccgatgtaggccgccgcctctttgggaaagctactactagtattggcagattaacccattatttccagcaaaaatttggatataaatttcaccacagaactaaattatactaatgtcgtttcaatttaccgcccaaataattaaggattgaactcttctaatccacattcgccgtgaattaattaattaaaaataatcacgagcgcacaagcgcacgtggttcctcgctcactttgccgcccatttccatcgcagagaaaagaaaaataaaaataagaataacaaaaaagaggccaactcgaaagtccaacacccaaccgagctactgacaagccagaggccaccaactcccgattttcttttttttttttaaaaaaaaaacaaatctgaatccgagaagcgaaatcgcgccgcccccaaatcgcagcgacatccgcctcaaaattcgaagcccggcctcgaattgggaggcgaatgcgtggcggcggcggcggaggaggaggggaggtgggcttacgatgagggaggcgacggaggcgatggcgagggcgaggtagcggccgaggtaggcgtcggagaggaaggcgccgatgatgggggcgaggctggtggtgccgttgaggccgttgagcagcgtcgccgcgtccacgctccgcatgtggaacacctgcgtcaggtacaccagcaggttcgccgacgtccccagcgtccccagcttctcgaacgtctcgttccctgcacacccaaaccccccacacctccatcagccgccgatcgccgctcgccggcgccgccggagggggaaaacgatcgaatcggcgatctcgccgtacctatgatgaagggcatggccctccagccgtggtacttgagggcgggcttgtcgccgccgttctccagcttgtcgacgtccatgctcttcagcttctggccggcctcctcgccgccgccgccgccgccgccgccgccgccgcgcatcctctctcaccaaccaccacctctgctctcctccagtagaagcgaagcgaccgacgcgggggaggagacagagtgagagtata
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| CDS seq | atgacggccgccgcggacgggctgcacccggcggagtgcggggtgggggagacgtgctcgaaggcgacgtcggggcagttcgcggtgctgttcatgtcgttcgcgttcctggtgctggggtcggcggggatccggccgtgcagcatgccgttcggcgccgaccagttcgacccccacacggagtccggcaagcgcggcatcaacagcttcttcaactggtactacttcaccttcacctccgccatgctcgtctccgccaccgtcatcatctacgtccagagcaacgtcagctggcccatcggcctcggcatccccaccgcgctcatgctcctcgcctgcgtcctcttcttcatgggcaccaggctctacgtccgcgtcacccccgagggctcccccttcaccagcatcgtccaggtgttcgccgccgcggcgaggaagcggtcgctcaagcagcccaaggaccccaagcaggacctgttcgacccgccgcacaccagcgccatcgtcaccaagctggcgcacacggaccagttccggtgcctcgacaaggcggccatcgtgtccggccccgacgacgtgcgcgccgggggcgccgcgccgtcgaacccgtggaggctgtgcagcgtgcagcaggtggaggaggtgaagtgcctcatccgcatcgtgcccgtctggtccacggggatcatctactacgtcgccgtcgtgcagcagtcgacctacgtggtgttgtccgcgctgcagtccgaccgacacctcggccggagcttccagatccccgcggcgtcgttcacggtgttcgccatgctggcgcagacgctgtggatccccatctacgaccgcctcctcgtgccgcgcctccgcagggtcacgggcaaggacgagggcctcaccctcctgcagcggcaggggatcgggatcgcgctgtcgacggtggcgatggtgatgtcggccgtggtggaggaccggaggcggcacatcgcgctgacgcagccgacgctggggacgaccatcaccggggGcgccatctcggccatgtccagcctgtggatggtgccgcagctcatggtgctggggctctcggaggcgttcaacctcatcagccagatcgagttctactacaaggagatcccggagcacatgcggagcgtggccggcgcgctcgccttctgcaacctggcgctggggaactacctcagtgggttcctcgtcaccatcgtgcaccggaccaccggcgccgggagcaactggctggcgcaggacctcaacaaggggaggctcgacctcttctactggatgatcgccggcatcggcatcttcaacatcatctacttcatgatctgcgccaagtggtacaggttcaagggggcagccgccaactga
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| Protein seq | MTAAADGLHPAECGVGETCSKATSGQFAVLFMSFAFLVLGSAGIRPCSMPFGADQFDPHTESGKRGINSFFNWYYFTFTSAMLVSATVIIYVQSNVSWPIGLGIPTALMLLACVLFFMGTRLYVRVTPEGSPFTSIVQVFAAAARKRSLKQPKDPKQDLFDPPHTSAIVTKLAHTDQFRCLDKAAIVSGPDDVRAGGAAPSNPWRLCSVQQVEEVKCLIRIVPVWSTGIIYYVAVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVFAMLAQTLWIPIYDRLLVPRLRRVTGKDEGLTLLQRQGIGIALSTVAMVMSAVVEDRRRHIALTQPTLGTTITGGAISAMSSLWMVPQLMVLGLSEAFNLISQIEFYYKEIPEHMRSVAGALAFCNLALGNYLSGFLVTIVHRTTGAGSNWLAQDLNKGRLDLFYWMIAGIGIFNIIYFMICAKWYRFKGAAAN |
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| Function | Protein NRT1/ PTR FAMILY 2.11 [UniProtKB/Swiss-Prot:Q9LV10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0030290 | OsCMeo_03g0030290.01 | Chr03 | 28834719 | 28836436 | - | NAM | ||
| CDS seq | atgacggccgccgcggacgggctgcacccggcggagtgcggggtgggggagacgtgctcgaaggcgacgtcggggcagttcgcggtgctgttcatgtcgttcgcgttcctggtgctggggtcggcggggatccggccgtgcagcatgccgttcggcgccgaccagttcgacccccacacggagtccggcaagcgcggcatcaacagcttcttcaactggtactacttcaccttcacctccgccatgctcgtctccgccaccgtcatcatctacgtccagagcaacgtcagctggcccatcggcctcggcatccccaccgcgctcatgctcctcgcctgcgtcctcttcttcatgggcaccaggctctacgtccgcgtcacccccgagggctcccccttcaccagcatcgtccaggtgttcgccgccgcggcgaggaagcggtcgctcaagcagcccaaggaccccaagcaggacctgttcgacccgccgcacaccagcgccatcgtcaccaagctggcgcacacggaccagttccggtgcctcgacaaggcggccatcgtgtccggccccgacgacgtgcgcgccgggggcgccgcgccgtcgaacccgtggaggctgtgcagcgtgcagcaggtggaggaggtgaagtgcctcatccgcatcgtgcccgtctggtccacggggatcatctactacgtcgccgtcgtgcagcagtcgacctacgtggtgttgtccgcgctgcagtccgaccgacacctcggccggagcttccagatccccgcggcgtcgttcacggtgttcgccatgctggcgcagacgctgtggatccccatctacgaccgcctcctcgtgccgcgcctccgcagggtcacgggcaaggacgagggcctcaccctcctgcagcggcaggggatcgggatcgcgctgtcgacggtggcgatggtgatgtcggccgtggtggaggaccggaggcggcacatcgcgctgacgcagccgacgctggggacgaccatcaccggggGcgccatctcggccatgtccagcctgtggatggtgccgcagctcatggtgctggggctctcggaggcgttcaacctcatcagccagatcgagttctactacaaggagatcccggagcacatgcggagcgtggccggcgcgctcgccttctgcaacctggcgctggggaactacctcagtgggttcctcgtcaccatcgtgcaccggaccaccggcgccgggagcaactggctggcgcaggacctcaacaaggggaggctcgacctcttctactggatgatcgccggcatcggcatcttcaacatcatctacttcatgatctgcgccaagtggtacaggttcaagggggcagccgccaactga
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| Protein seq | MTAAADGLHPAECGVGETCSKATSGQFAVLFMSFAFLVLGSAGIRPCSMPFGADQFDPHTESGKRGINSFFNWYYFTFTSAMLVSATVIIYVQSNVSWPIGLGIPTALMLLACVLFFMGTRLYVRVTPEGSPFTSIVQVFAAAARKRSLKQPKDPKQDLFDPPHTSAIVTKLAHTDQFRCLDKAAIVSGPDDVRAGGAAPSNPWRLCSVQQVEEVKCLIRIVPVWSTGIIYYVAVVQQSTYVVLSALQSDRHLGRSFQIPAASFTVFAMLAQTLWIPIYDRLLVPRLRRVTGKDEGLTLLQRQGIGIALSTVAMVMSAVVEDRRRHIALTQPTLGTTITGGAISAMSSLWMVPQLMVLGLSEAFNLISQIEFYYKEIPEHMRSVAGALAFCNLALGNYLSGFLVTIVHRTTGAGSNWLAQDLNKGRLDLFYWMIAGIGIFNIIYFMICAKWYRFKGAAAN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0030290 | OsCMeo_03g0030290.02 | Chr03 | 28834781 | 28839998 | - | IsoSeq | ||
| CDS seq | tactctcactctgtctcctcccccgcgtcggtcgcttcgcctccctcatcggcatgttct |
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| Protein seq | YSHSVSSPASVASPPSSACS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.869757 | 95.931534 | 28.640202 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0687000 | RBH | 3.903233 | 4.427396 | 18.466515 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g48180 | RBH | 2.546711 | 2.953651 | 4.606949 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0687000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0030500 | RBH | 2.290128 | 143.658401 | 26.569914 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0030230 | RBH | 1.432187 | 23.860035 | 5.815454 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022690 | SBH | 3.539762 | 1.249252 | 4.207969 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0030400 | RBH | 0.677881 | 2.435987 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0030090 | RBH | 15.852463 | 76.930313 | 34.700520 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0472800 | RBH | 35.470629 | 60.950142 | 16.6928935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0029790 | RBH | 2.847866 | 17.254139 | 5.006736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0473500 | RBH | 28.297803 | 21.299584 | 3.8813145 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0030130 | RBH | 0.180517 | 0.464065 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0030200 | RBH | 1.722285 | 41.852222 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0030160 | RBH | 20.776804 | 46.999744 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0029970 | RBH | 1.409910 | 6.251681 | 4.537283 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0029930 | RBH | 1.002023 | 26.085903 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G029950 | RBH | 1.693249 | 25.621311 | 11.688040 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029880 | RBH | 6.530879 | 56.086342 | 12.939105 |
