Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0028240 | OGI:03072350 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:26701206-26706647 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatagaaaaggactgaagtttggatccaaactttggatctaaacacagcctttgtgctgaatgaattttctcagtgtttcgtcctttactcataccacaacagcaattcatctcaacctggcattacctaactgctaattgatccacagtgtaaataatatacgcctacgattgttattttcaacaataaatctaacattgctagagtgcaccaaatttatttcaattcaataaaactggacatatcgacacagttccatccaatgtactgcaactaaaatttgttgtggtccttctagcaaatatcacatcctcaaagcatcactgcattgtacaagaaaaggtacacattaaactaagaatatatgttatacctattttaaatatttttataatgactgggatcgatctagtacatgtattatggaagtttagtaattgggagtgtgcaagatttacagaagttatacacaatttctgagtgcatcctagcaacctactacaggtgcatgtacttctagggatttactaatattttgatcataaagaaaatatgagcacccattacttccaaggatctattgttacgaatgcaaagcagagtaaaattaattttagactccaatcatattaaaagttgaagatcataccgtttgttgacatcacactctaggactgggggtcattaatccttttgatgacgagttcttttggtctcattgctctcgacataagtaaaaccttaagagatcggagtgcatcctctttgctatctatataaactttttcttttttcatttttttgacatagccctgcacttcgctgctatcccatggtaatccgatcattcccacacttgaaagcttaccccaattatgcagtagtcctatgcttttaatcttttcctttaagctgatgccctccttactgtcccaatcagcaatgaccggctcaaacacttctttaaatcttgcagattcagggattactaacagtagtgttgctgttgcattttggaggacttccttgggtgtagtagatgggtcgtaatcccaaagaatatctacagcatctaaggcatgtctcctgcttaggggtagatctcccagttttctaaacccacccataccatcctctccgtatcctccattaatttccaattcagtggaacccgggatcaaaactttgtacccattgaaactataccaacctccatatttatctgtgaaccctatcaagtataagttatcggtcctaaaagccaaggtaacggaccccttacgggcaattagtctgggtaggatccaaccaaatggcacttctcgatcggtatctgtttgatttctaagaaccttcagggtccctaagtgaaattcagattctttggttgcacagtcaatgaagctaacaataaatgaagcctgctgatcctgtttgaggtcgtatgtcatttcataaatttctgctccagtccccctatataaagccattagacaattgaattaaacatatactccctccgtctcataatataagggattttgaatttttgtttgcactgtttaaccactcgttttattcaaaaaattttgaaagtattatttattttttgacttactttattatccaaaatactttaagtgcaactttttgttttttatatttgcataaattttttgaataaaacgagtggtcaaacaatacaagtaaaaaactcaaaatcctttatattatgagacggagggagtactagctctagaaatgcatgaagaacacaataggaaagtacaattggacataattatttgtttcaaataatcatttcttcccgtcaattaaattgcagaaaatttacctacaacttaaaaaaaatctttgaaacttgattaactgaaagtaataaagtgtataaataaatcacatctgtactaaaagaaaataaaattattctttaaatccattttaatattatataataggataaaatataatgttagaggtataaattattttgaaatgtctaaacataaggtaaaaacgttttaaaatttattctcttaattatatatgagagaaatgcataaagttttcttcttactataattaattttagaatccaattttttatttaacaaaggaaaagttcattttatactctaaactactttaattaaaggaagatcaattcaaaaataacttatgtttatgcacgttgacaatataaaagcatttaatatacagtatatacctgaatggttcatctagtgattgcgcactgacagcatgaactagatatgatagtgccaccaggatcaacaaattagtgctaataatttctttcaagctcgtggaggtactgcatctgcagatagtagggagaatataaagatggatttctttcacactttagaaaactattcatgaaatgcaattaaaagaacactctaaagtagaatattatatggagcaaaaataataaaaacatgtccaagtttaaaaaaaaagaatacatccttcttttatggattaactatatacgtatttttttcaatatcttaagacctgaccaaacattaccctacgcaaatctcaacatataatactggtaagtttctgtaaatgtacaaaataattacaacattagggatgcttaagatcagttacaatctaccgctaagccaaattaaattgtcaaatgtttttttcgtatttctttcacttttgtgttacttcagaaaactttacaaattttaccgctaagccaaattaaattgtcaaatgttgtttcgtatttctttcacttttgtgttactccttcagaaaacattacaaattcttggtaaaatggttagcgatatattcaaggaattaaaaatgttatgcgggagcaaatatatattataacaataaaaaagtgaacaaattaacaaacttaaatggctttcgatctgatctactgttagtccgacaatttactcctgaactgtaccattacatggctttgccgttcccttgcgctaacaatgtagtattttttttcccacaaaagcaaggtctcatagttgattattaactaaaaaggtgtaggctatatatattgcatggataaacacactacgcaacaaaaaatatagttaatttgttttttaaggaaaaatagctagtttgtcgactaataaaactagttataacgggctattatatactcgctccgtcgtattttaagtgtaaccataagtttatgtgtccaattttgatcgtccgtgttgtttgaaatttttttatagttagtacttttgttatgagatgataaaacatgaatagcactttactcgtgacttatgtttttaatttttttaaaaaatatttttaaataagatggacggttaaagttaggtgtagaaaatcattgctgcatttaaaatgagaaggtgtgagtttatggcacagagtaaaatgagacaaagctgttggaaaaaaaaatgccgcagagtaatctcacagcagtctgtgttcactggcgttttgcccgtggcctgttgctgcgcgccggggtcgacaagctgcaggtggtcgagtagagtaataacagtagggcaagctagctgcctatgctaactcacgtaccgtatacatgcatactctatgtatctaccctactgatgcgtgatgactgctcttcgctttgcaggacaaataatatgggcaggctgcagcgggccagctataaaagttgtggacgactgtgtagctagctagggagttaaacatgcatgcttttatgaaaataattataaatcaccctataaaccactagtaagtacaaaacaaggtttcctaatataatgtactcccttcgtttctaaatattttacaccattgacattttagcacatatttgaccgttcgtcttattaattttttttataaaatatgtaaaactatatgtatacatataagtatattcaacaatgaatcaaataataggaaaagaattaataattacttaaattttttaaataagatgaacagtcaaacatattaaaaaaaatcaactgtatcaaatatttagaaaacggagtatattctgccctctggcgttacatacatacagttattttgaattttatcactgtgttgctccttctgtttgcttagaattttaaatgccgattcatatatttttatataagtttgtggcgaaagatcagttcaaaacaagtcggcctaccgaggtgataaacagcaattaattaatgttaacgttaattacctgttatgtttgagtccgcggcgagcttccatacatgctttcgccgcaacgcggggatgcatacccctggtatgaaaacaaagtagaaaagtacgtattagatacgggcagtttggcgtgcggcacagtggatatatagtcgcgattaatcggtccatttcattcgtttagcaaaaactgattaaatcaaaatgagctgctcccctaaaattctaactgaagcattttatataatcaccgaaaacatgggcttaagatgaatttaattaaatttatagctcatattctttctttttataactgggaattttttatggatgttgaggcaatgttttagaagaccaaaagttaatttgtgacgaaagatcggttcaaatatgaaaagtgtcgttgtgatccttctgcggtaataacagcaatgtaaacattaattacctatacattttttttaacgaagctcctccgtcctaaaatgtaactatttttaagattggtacgggttaagaaattagatgaaaatgatttgaagaagtgtgtgattggttgaaaagaaaaaataggtggagaaaaatggttgtgattggttgaaaggatgaggaaagtggagaaatagctttattttagtataaaatactgtgttaaaaatagctatattttgggacgaaggatgtacctgttaagtttcagtccaccgcgagcttccatacggtttccgttgcaacgccggaatgcatacacctggaatgaaaacaaagttgacaagtattagatataggcaattggacggcactggggtctggggatggaggagaggctctctcaccgtctcatccgccgacaggccggccggcggcagctgacaaggcatttcttgcctgacgaaactgggagcgaacagtacaatgtgagatgcaggaccaaaaaagaaaatggcagcaagaaaggcaaacaaatggaaaccggggacactcaccggctcactgatggccagatcgacgagggccgcggcagaaaggccccctggagctacctgaaactgtgagcgaacagtaaattgtgatgaatctgagagcagagagcagcacaaaaaaaaattttgggtgcaatgcgatgggagtaaaaacccgggacactcaccggctcaccaacgggagaacgagggaggccg
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| CDS seq | atgcatccccgcgttgcggcgaaagcatgtatggaagctcgccgcggactcaaacataacagatgcagtacctccacgagcttgaaagaaattattagcactaatttgttgatcctggtggcactatcatatctagttcatgctgtcagtgcgcaatcactagatgaaccattcaggaccgataacttatacttgatagggttcacagataaatatggaggttggtatagtttcaatgggtacaaagttttgatcccgggttccactgaattggaaattaatggaggatacggagaggatggtatgggtgggtttagaaaactgggagatctacccctaagcaggagacatgccttagatgctgtagatattctttgggattacgacccatctactacacccaaggaagtcctccaaaatgcaacagcaacactactgttagtaatccctgaatctgcaagatttaaagaagtgtttgagccggtcattgctgattgggacagtaaggagggcatcagcttaaaggaaaagattaaaagcataggactactgcataattggggtaagctttcaagtgtgggaatgatcggattaccatgggatagcagcgaagtgcagggctatgtcaaaaaaatgaaaaaagaaaaagtttatatagatagcaaagaggatgcactccgatctcttaaggttttacttatgtcgagagcaatgagaccaaaagaactcgtcatcaaaaggattaatgacccccagtcctag
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| Protein seq | MHPRVAAKACMEARRGLKHNRCSTSTSLKEIISTNLLILVALSYLVHAVSAQSLDEPFRTDNLYLIGFTDKYGGWYSFNGYKVLIPGSTELEINGGYGEDGMGGFRKLGDLPLSRRHALDAVDILWDYDPSTTPKEVLQNATATLLLVIPESARFKEVFEPVIADWDSKEGISLKEKIKSIGLLHNWGKLSSVGMIGLPWDSSEVQGYVKKMKKEKVYIDSKEDALRSLKVLLMSRAMRPKELVIKRINDPQS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0028240 | OsCMeo_03g0028240.01 | Chr03 | 26701423 | 26705545 | - | NAM | ||
| CDS seq | atgcatccccgcgttgcggcgaaagcatgtatggaagctcgccgcggactcaaacataacagatgcagtacctccacgagcttgaaagaaattattagcactaatttgttgatcctggtggcactatcatatctagttcatgctgtcagtgcgcaatcactagatgaaccattcaggaccgataacttatacttgatagggttcacagataaatatggaggttggtatagtttcaatgggtacaaagttttgatcccgggttccactgaattggaaattaatggaggatacggagaggatggtatgggtgggtttagaaaactgggagatctacccctaagcaggagacatgccttagatgctgtagatattctttgggattacgacccatctactacacccaaggaagtcctccaaaatgcaacagcaacactactgttagtaatccctgaatctgcaagatttaaagaagtgtttgagccggtcattgctgattgggacagtaaggagggcatcagcttaaaggaaaagattaaaagcataggactactgcataattggggtaagctttcaagtgtgggaatgatcggattaccatgggatagcagcgaagtgcagggctatgtcaaaaaaatgaaaaaagaaaaagtttatatagatagcaaagaggatgcactccgatctcttaaggttttacttatgtcgagagcaatgagaccaaaagaactcgtcatcaaaaggattaatgacccccagtcctag
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| Protein seq | MHPRVAAKACMEARRGLKHNRCSTSTSLKEIISTNLLILVALSYLVHAVSAQSLDEPFRTDNLYLIGFTDKYGGWYSFNGYKVLIPGSTELEINGGYGEDGMGGFRKLGDLPLSRRHALDAVDILWDYDPSTTPKEVLQNATATLLLVIPESARFKEVFEPVIADWDSKEGISLKEKIKSIGLLHNWGKLSSVGMIGLPWDSSEVQGYVKKMKKEKVYIDSKEDALRSLKVLLMSRAMRPKELVIKRINDPQS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0028240 | OsCMeo_03g0028240.02 | Chr03 | 26701206 | 26706647 | - | IsoSeq | ||
| CDS seq | ggcctccctcgttctcccgttggtgagccgtttcaggtagctccagggggcctttctgccgcggccctcgtcgatctggccatcagtgagccgtttcgtcaggcaagaaatgccttgtcagctgccgccggccggcctgtcggc |
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| Protein seq | GLPRSPVGEPFQVAPGGLSAAALVDLAISEPFRQARNALSAAAGRPVG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 26702460 | 26703455 | - | OsCMeo_03g0028240.02 | OsCMeo_03g0028240.01,OsCMeo_03g0028240.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 11.734711 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0653900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g45120 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0653900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0028450 | RBH | 0.0 | 0.0 | 1.241896 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0028150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0028330 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0027990 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0399900 | SBH | 0.0874115 | 0.1851685 | 0.07955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0027700 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0443100 | RBH | 0 | 0 | 1.0485665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0028060 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0028120 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0028130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0027910 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0027870 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G027830 | RBH | 0.0 | 0.0 | 6.987818 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0027840 | RBH | 0.0 | 0.0 | 0.0 |
