Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0024780 | OGI:03061440 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:22554118-22559213 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtcttttcggtttggctcgatccgctttgccgcaacacgagagaggaaggaatccctcacgccgttctcgtctcgccgtcggcgcggcgtgacggcgtcgcgatggaccccgccgccgctgccgccgccggcggcggcgccggtccaaaatctgatgcggccccttccgcaccggcgctgcacggcctgccggtggagatgacgacgggggagatggaggccgccatcgccgccctccccgcgaagaaggaggcgctgcgcgaggccttcgacgtcctcgccgcctgctcgcccttcccgctccccttcgcctggggcgacctcgactcctacatctcctcgctccagtcgtcgatcgaccggcggttcggccagctccgggtcctcgaggcggcccgccccgcgcttgcaggtcccgccgccgcctccacaagcgacggcgagaagggcgggaagcaggaagaggacagcgacgaggaggagaaagaggaggaggaggaagaggttgaggaggaagaagttgaggaagaggaggagattgaggaggaagaggtcgaggaggagattgaggaggaagaagaggagattgaggaggaggaagaggaagtcagagaagaggttcaggaggccggggaggaggtcgacgaggagcagcagggagccaacgaggagatgcagaagtccaaagaagatgctgatgagtcttccaagagtgcgattccagtgcagaaacaggaagaggatgaggcagagaaggagataattgaggccaaagatgaggagcaacatggggacaagctggcctctcaagaacacgacattggggagaatggggatgtggatgcccaaggggttcagcaggtggctgacggtgagacaatggaggccaaatcggaggagcaaaatgaggctaaggtgacatctatggagcatgacatcgaggagggcgacgagaaagcgtctcgagaacaaggcaatcgagctcttccaagttgcagcgatcatcttaggggagtgtgtgctggcatggacgtcagggggctgttgaaattggtgtgtaagaaccagagcatttgcctctggcatgagtaccccgtggtgatgcgccatgccccagatgctgctgcccttgtcctccaagtcgtccagggtttccttctcagcaagaagatgaagaccaccaaggtttggggtaactgtgttgggctgattcggtgcttacctgcagtgaatgcctcgctgtcctcagacacaatgaagcaggccaagcagctggcgaaggattggaaggagatgattgacagcactggaagcagcagggacgttttgaacctgtcctcctggggcctcctgtattttctcatttcttacaacattgtatcggagttttctgttgatgagatcttctgtatctttggtactctttcacgcaaacaacagaaaaagaactgcatcgaactctgcaaaggtcttgggcttgtcaataggatcactggtatggatgactctctcttcactcaaggatcatatgcgttcctgcacttttgtgctcaatgatagtatgttaatgccataaattttcattgccaccactgaacagtaaacatgtgcacttcatataatgctgctagcctttatctggcaccctgcaaacactcatcgaaatgtgtaattctctctttcaattgcagccactctgtccatgcacattatgctatagtttacagtatttcatctaggtctgttcgacccatttcattactgccaaatttcatagccaccactgaacagtgaacatgtgcactgcatataatgctgctagcctttaagataatcatcaatagtgaatcatccaataagagatgcataggtagagtactccttttcctggtagcaagaaatgttgcatgcaagcaggttgtgcttgtatagtagtcagagtgaaacatgtcgaactcatagtgtagtaaaaataatcttctaatctaatatctgttcaccatcgtttaacccagaatattctcttatgataaagcgtggttttttcacactacaaaagagaattttgggagtacaataaaaaaactaaaactgaaggtcaactggtcaaattctactattctgcttcatcttttgccacattttcaacatacctcagatgttcaggggcaattaatcattgaatcctataggaaaaccactgcacaacatagagaactagatggcacaactcgatctcttgtatttgcttctctgttctggcatacatctcactgcttttcataaccaatttaaccgtggctgctgaacaatacctgattgattattaactcttctagtctccaactcttgtaatgtaactgtatagatgtttatgatttaaaattaattacttaaacgatcaacatgaaaacatgtcttaatggactgttttattcaaaatgtactggctgcacattatttgatttcaagatacatcaattttcatttggagaagcagcttggagttccccaggcagtggatctcaatcattgtgatccttatgctgtgagcctgtgactatatcatgttgtacattgaaaatccacttgaaatctagattaagcgtgggttttggtcgatagcctttttaagcatgcgttgttttttttttttaactcttggggagggatcgtttcctcccctgttttttcttcttctcttcttaaagaaatgacacacaattctcttgcgtgttcaagAaaaaaaaatctagattaataacttgcttatttcatttgagttcctaataagcgttattttttgtggtatttgttcgatgaatacatatagatatgttgagctttttagggatgtgttcctcttctgatggtctaaatcagtcaatcattttgaacatcttgaaccattttgcatattccatgtatctccaggcattgaagggctattggcagtatatacaagtgacagctgaccaataatttgaacgataaaataaaaatcctttctaattggcatgctagtcttgagaacaaagtttcaattattattcacttgcttagttgctccacttgtgcaccttgaggccctgtttttgcacgaggtactttttcctgattcacagtaaaaaaaaatgttaattccataatggagtttcttcagtgtttgtagacgctgcgaccaaatgacatttttgtttatttgatagacctgttaatataagctcatgtaggatagtttatcatctgatattgatacatcacagatatacctggtaattgcttggtgcaatgtatactctgtagtaactagctgatgaaatttcaatttttgatactatgatgctgtgctacttgtagttaactagttatttcctttttatatatacatttcaacagaattgtagacatttatctctttgataatttttattttgctggagcaatgtctgctgacatttttcttgttgtcatgtttttgcagacttaattgattatttgattggaaatggtcaacaactcgaagccttactgttaacacaagcttttaatttgatagacaaatatactccactttctcttctgaagggatatgttgaaagggcaaaacagaatgctctggatataattaatatgaattctccacgcaagtctctggtattgactactccataggaaatgattaaatgttggggtagtacttttctaatttatactgcaacgtgatctggcaccgatcgatgtcataaatcataagagtaaatagaaacttgaaatattgttatgcatggactattagagtgatcttttaccttgcaaaaattaagaaattggaaataagacattcttgtagtagtagtctggtagatgtttatgttacaaaaatttgttctctcctcgagctatttattttttgatggtttaaatatttgatgatggcacatttacttgtgagcagagtccacttataacgaaggaggtggatagtctaatggttgcacagaacatagttcaacagcagatcactgatttcaacgtgcgcagtggtatgctggcagaaatgaagaaattattagatcaatatgcaacgaagcgaagttcaggggatgcttgttctgcctcaacttcaaattcagagcagcagcagcagcagcagcaaaagcatacaaacaagaagcgcaagagagagcagctcgagcagcaacagcacaggggacaagagatccagcagcagaagcaacagattaaaccacaagggaagaaggggcagcagcaaactaagccagaacagaagaagcaacaacagctaaacacaaataagcctcaagagcaacaacaacagcagcagcagaagcaacaaattaagccgcaagagaagatggggaaggagcaaactaagccagaagagcagcagcagcaacaaaagacaaataggcctcaagaacaacagcataagaagccacagaaaaaacagcagcagcagcaacaacaacagcaaagtaagccacaagagaaacgcccaaggccatgcaccaccaagctgccaacaccatctatccctgcttccatatcacctatggttccgcatattgtgcaggttgattctgttgggcattcaccatatgctgcaatgcctatatctcacacttatgctgcccaactaggctggcctggaaatcagagcgctgcatttgcacaaaatgttggagtttctcaatttatgggtatgtttaatccccaacagcctaattatcccttctaccgtcatccaccgttctatcccaggtagcacttgctgcaatgggttgttgagtaaactagagaaagatatagatgcttacaggagttttcctcttgaattgtgttggctcaattgcctcatgttgtgttggacatttatttacattaacatgtatatacaattttggccattctctttgttgtaatagcttttcaatagttctgccctttgaaggtgcagcttgtcgatttaactgacagttgacatgctccttgtttcgtttgttattttaagtgtggacgtttgaggattatatgcaaaggcgtggaggtatgatggtgcggtttctgttcaa
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| CDS seq | atggaccccgccgccgctgccgccgccggcggcggcgccggtccaaaatctgatgcggccccttccgcaccggcgctgcacggcctgccggtggagatgacgacgggggagatggaggccgccatcgccgccctccccgcgaagaaggaggcgctgcgcgaggccttcgacgtcctcgccgcctgctcgcccttcccgctccccttcgcctggggcgacctcgactcctacatctcctcgctccagtcgtcgatcgaccggcggttcggccagctccgggtcctcgaggcggcccgccccgcgcttgcaggtcccgccgccgcctccacaagcgacggcgagaagggcgggaagcaggaagaggacagcgacgaggaggagaaagaggaggaggaggaagaggttgaggaggaagaagttgaggaagaggaggagattgaggaggaagaggtcgaggaggagattgaggaggaagaagaggagattgaggaggaggaagaggaagtcagagaagaggttcaggaggccggggaggaggtcgacgaggagcagcagggagccaacgaggagatgcagaagtccaaagaagatgctgatgagtcttccaagagtgcgattccagtgcagaaacaggaagaggatgaggcagagaaggagataattgaggccaaagatgaggagcaacatggggacaagctggcctctcaagaacacgacattggggagaatggggatgtggatgcccaaggggttcagcaggtggctgacggtgagacaatggaggccaaatcggaggagcaaaatgaggctaaggtgacatctatggagcatgacatcgaggagggcgacgagaaagcgtctcgagaacaaggcaatcgagctcttccaagttgcagcgatcatcttaggggagtgtgtgctggcatggacgtcagggggctgttgaaattggtgtgtaagaaccagagcatttgcctctggcatgagtaccccgtggtgatgcgccatgccccagatgctgctgcccttgtcctccaagtcgtccagggtttccttctcagcaagaagatgaagaccaccaaggtttggggtaactgtgttgggctgattcggtgcttacctgcagtgaatgcctcgctgtcctcagacacaatgaagcaggccaagcagctggcgaaggattggaaggagatgattgacagcactggaagcagcagggacgttttgaacctgtcctcctggggcctcctgtattttctcatttcttacaacattgtatcggagttttctgttgatgagatcttctgtatctttggtactctttcacgcaaacaacagaaaaagaactgcatcgaactctgcaaaggtcttgggcttgtcaataggatcactgacttaattgattatttgattggaaatggtcaacaactcgaagccttactgttaacacaagcttttaatttgatagacaaatatactccactttctcttctgaagggatatgttgaaagggcaaaacagaatgctctggatataattaatatgaattctccacgcaagtctctgagtccacttataacgaaggaggtggatagtctaatggttgcacagaacatagttcaacagcagatcactgatttcaacgtgcgcagtggtatgctggcagaaatgaagaaattattagatcaatatgcaacgaagcgaagttcaggggatgcttgttctgcctcaacttcaaattcagagcagcagcagcagcagcagcaaaagcatacaaacaagaagcgcaagagagagcagctcgagcagcaacagcacaggggacaagagatccagcagcagaagcaacagattaaaccacaagggaagaaggggcagcagcaaactaagccagaacagaagaagcaacaacagctaaacacaaataagcctcaagagcaacaacaacagcagcagcagaagcaacaaattaagccgcaagagaagatggggaaggagcaaactaagccagaagagcagcagcagcaacaaaagacaaataggcctcaagaacaacagcataagaagccacagaaaaaacagcagcagcagcaacaacaacagcaaagtaagccacaagagaaacgcccaaggccatgcaccaccaagctgccaacaccatctatccctgcttccatatcacctatggttccgcatattgtgcaggttgattctgttgggcattcaccatatgctgcaatgcctatatctcacacttatgctgcccaactaggctggcctggaaatcagagcgctgcatttgcacaaaatgttggagtttctcaatttatgggtatgtttaatccccaacagcctaattatcccttctaccgtcatccaccgttctatcccaggtag
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| Protein seq | MDPAAAAAAGGGAGPKSDAAPSAPALHGLPVEMTTGEMEAAIAALPAKKEALREAFDVLAACSPFPLPFAWGDLDSYISSLQSSIDRRFGQLRVLEAARPALAGPAAASTSDGEKGGKQEEDSDEEEKEEEEEEVEEEEVEEEEEIEEEEVEEEIEEEEEEIEEEEEEVREEVQEAGEEVDEEQQGANEEMQKSKEDADESSKSAIPVQKQEEDEAEKEIIEAKDEEQHGDKLASQEHDIGENGDVDAQGVQQVADGETMEAKSEEQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQSICLWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTMKQAKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNALDIINMNSPRKSLSPLITKEVDSLMVAQNIVQQQITDFNVRSGMLAEMKKLLDQYATKRSSGDACSASTSNSEQQQQQQQKHTNKKRKREQLEQQQHRGQEIQQQKQQIKPQGKKGQQQTKPEQKKQQQLNTNKPQEQQQQQQQKQQIKPQEKMGKEQTKPEEQQQQQKTNRPQEQQHKKPQKKQQQQQQQQQSKPQEKRPRPCTTKLPTPSIPASISPMVPHIVQVDSVGHSPYAAMPISHTYAAQLGWPGNQSAAFAQNVGVSQFMGMFNPQQPNYPFYRHPPFYPR |
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| Function | FRIGIDA-like protein 3 [UniProtKB/Swiss-Prot:Q67ZB3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0024780 | OsCMeo_03g0024780.01 | Chr03 | 22554118 | 22559213 | + | NAM | ||
| CDS seq | atggaccccgccgccgctgccgccgccggcggcggcgccggtccaaaatctgatgcggccccttccgcaccggcgctgcacggcctgccggtggagatgacgacgggggagatggaggccgccatcgccgccctccccgcgaagaaggaggcgctgcgcgaggccttcgacgtcctcgccgcctgctcgcccttcccgctccccttcgcctggggcgacctcgactcctacatctcctcgctccagtcgtcgatcgaccggcggttcggccagctccgggtcctcgaggcggcccgccccgcgcttgcaggtcccgccgccgcctccacaagcgacggcgagaagggcgggaagcaggaagaggacagcgacgaggaggagaaagaggaggaggaggaagaggttgaggaggaagaagttgaggaagaggaggagattgaggaggaagaggtcgaggaggagattgaggaggaagaagaggagattgaggaggaggaagaggaagtcagagaagaggttcaggaggccggggaggaggtcgacgaggagcagcagggagccaacgaggagatgcagaagtccaaagaagatgctgatgagtcttccaagagtgcgattccagtgcagaaacaggaagaggatgaggcagagaaggagataattgaggccaaagatgaggagcaacatggggacaagctggcctctcaagaacacgacattggggagaatggggatgtggatgcccaaggggttcagcaggtggctgacggtgagacaatggaggccaaatcggaggagcaaaatgaggctaaggtgacatctatggagcatgacatcgaggagggcgacgagaaagcgtctcgagaacaaggcaatcgagctcttccaagttgcagcgatcatcttaggggagtgtgtgctggcatggacgtcagggggctgttgaaattggtgtgtaagaaccagagcatttgcctctggcatgagtaccccgtggtgatgcgccatgccccagatgctgctgcccttgtcctccaagtcgtccagggtttccttctcagcaagaagatgaagaccaccaaggtttggggtaactgtgttgggctgattcggtgcttacctgcagtgaatgcctcgctgtcctcagacacaatgaagcaggccaagcagctggcgaaggattggaaggagatgattgacagcactggaagcagcagggacgttttgaacctgtcctcctggggcctcctgtattttctcatttcttacaacattgtatcggagttttctgttgatgagatcttctgtatctttggtactctttcacgcaaacaacagaaaaagaactgcatcgaactctgcaaaggtcttgggcttgtcaataggatcactgacttaattgattatttgattggaaatggtcaacaactcgaagccttactgttaacacaagcttttaatttgatagacaaatatactccactttctcttctgaagggatatgttgaaagggcaaaacagaatgctctggatataattaatatgaattctccacgcaagtctctgagtccacttataacgaaggaggtggatagtctaatggttgcacagaacatagttcaacagcagatcactgatttcaacgtgcgcagtggtatgctggcagaaatgaagaaattattagatcaatatgcaacgaagcgaagttcaggggatgcttgttctgcctcaacttcaaattcagagcagcagcagcagcagcagcaaaagcatacaaacaagaagcgcaagagagagcagctcgagcagcaacagcacaggggacaagagatccagcagcagaagcaacagattaaaccacaagggaagaaggggcagcagcaaactaagccagaacagaagaagcaacaacagctaaacacaaataagcctcaagagcaacaacaacagcagcagcagaagcaacaaattaagccgcaagagaagatggggaaggagcaaactaagccagaagagcagcagcagcaacaaaagacaaataggcctcaagaacaacagcataagaagccacagaaaaaacagcagcagcagcaacaacaacagcaaagtaagccacaagagaaacgcccaaggccatgcaccaccaagctgccaacaccatctatccctgcttccatatcacctatggttccgcatattgtgcaggttgattctgttgggcattcaccatatgctgcaatgcctatatctcacacttatgctgcccaactaggctggcctggaaatcagagcgctgcatttgcacaaaatgttggagtttctcaatttatgggtatgtttaatccccaacagcctaattatcccttctaccgtcatccaccgttctatcccaggtag
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| Protein seq | MDPAAAAAAGGGAGPKSDAAPSAPALHGLPVEMTTGEMEAAIAALPAKKEALREAFDVLAACSPFPLPFAWGDLDSYISSLQSSIDRRFGQLRVLEAARPALAGPAAASTSDGEKGGKQEEDSDEEEKEEEEEEVEEEEVEEEEEIEEEEVEEEIEEEEEEIEEEEEEVREEVQEAGEEVDEEQQGANEEMQKSKEDADESSKSAIPVQKQEEDEAEKEIIEAKDEEQHGDKLASQEHDIGENGDVDAQGVQQVADGETMEAKSEEQNEAKVTSMEHDIEEGDEKASREQGNRALPSCSDHLRGVCAGMDVRGLLKLVCKNQSICLWHEYPVVMRHAPDAAALVLQVVQGFLLSKKMKTTKVWGNCVGLIRCLPAVNASLSSDTMKQAKQLAKDWKEMIDSTGSSRDVLNLSSWGLLYFLISYNIVSEFSVDEIFCIFGTLSRKQQKKNCIELCKGLGLVNRITDLIDYLIGNGQQLEALLLTQAFNLIDKYTPLSLLKGYVERAKQNALDIINMNSPRKSLSPLITKEVDSLMVAQNIVQQQITDFNVRSGMLAEMKKLLDQYATKRSSGDACSASTSNSEQQQQQQQKHTNKKRKREQLEQQQHRGQEIQQQKQQIKPQGKKGQQQTKPEQKKQQQLNTNKPQEQQQQQQQKQQIKPQEKMGKEQTKPEEQQQQQKTNRPQEQQHKKPQKKQQQQQQQQQSKPQEKRPRPCTTKLPTPSIPASISPMVPHIVQVDSVGHSPYAAMPISHTYAAQLGWPGNQSAAFAQNVGVSQFMGMFNPQQPNYPFYRHPPFYPR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.335880 | 4.735635 | 7.388136 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0588200 | RBH | 1.340069 | 2.285922 | 3.755686 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g39129 | RBH | 0.867162 | 1.456976 | 0.902059 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0588200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0024930 | RBH | 0.404875 | 5.608026 | 3.425533 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0024720 | RBH | 0.279793 | 0.765237 | 1.974092 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0024810 | RBH | 0.0 | 0.0 | 0.763743 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0024830 | RBH | 0.060311 | 0.111744 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0024540 | RBH | 2.898092 | 2.461223 | 11.474209 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0376000 | RBH | 5.277066 | 13.3291265 | 6.8685575 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0024320 | RBH | 0.275853 | 0.513325 | 0.934868 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0377700 | RBH | 5.891428 | 12.1909165 | 9.742164 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0024610 | RBH | 0.236192 | 0.086607 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0024640 | RBH | 0.097401 | 1.075490 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0024720 | RBH | 2.101827 | 17.036215 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0024490 | RBH | 0.792912 | 0.600613 | 0.659595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0024380 | RBH | 0.546853 | 5.912156 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G024460 | RBH | 0.504710 | 3.130900 | 1.846213 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0024420 | RBH | 0.624378 | 7.892934 | 3.909699 |
