Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0022200 | OGI:03047470 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:18369354-18372756 | ||||||||
| Gene Symbol | AL1, AL1a, AL1b, AL1c, OsAL1 | ||||||||||
| DNA seq | cggcggcgagcaatggaagccgctctcctccgtcctcctcccctcgctgcccgaggcggcgtcagcatcgccatcgccttctccgtctctcgactcccttccgccgccgccgccgccgctgcggggaagcccaggaagctcgctccccccgcatgccgctgccgcgccacgccgcaatggcagctcgatttcctgggcgcggaagcggacacggaggcagacggcggcgacgacgacgacgacctcgacctcgacctctccctccccgccgagaccaacgactggtgcgtccgcgcgcgccgctccgctctccgctccatcgaggcgcgtggcctctccccctcgctccagcggatggtggcctcgcccaagaagaagaacaagaagaagaagtccaagaagacgaacttgaagcagaagaaggccgccgagcccaagcctcctcgcgacaccgacgacgatgaggacgacgaggaggaagcggacgatgatctggaggccctcctggcaggagggggtgagctggacgacctcgagctcagggtcgcgcagttcgccgatggcatgttcgacgaaaagcgccagaggaacagggagcagttcatccagacgctctccgccttctcacccgccgcgccgtccaaccggagccaggaggtgtccctcaacaggtccatcgtcgaggctcgcaccgccgacgaggtgctcgcgctcaccgccgaggtggtcgccgccgtggccaaaggcctcagcccgtccccgctcacgccgctcaacatcgccaccgcgctccaccgcatcgccaagaacatggaggcggtgtccatgctacagacgcaccggctcggcttcgcgcgcagcagggacatgtccatgctcgtggggctggcaatggtggccctgccggaatgctcaccgcagggtgtttctaacatctcctgggctttgtccaagattgggggtgacctgctctacttgccggagatggataggattgcccaggtagccatcaccaaggttgacagcttcaatgcacagaatgttgccaatgtagccggatcattcgcttccatgcgccactcagcaccggaccttatctcagcattgacccggagagcagcagaactagtgtacaccttcaaggagcaagagctcgcccagttcttgtggggatgcgcttctcttaacgagtgtccgtatcctctacttgatgcacttgatactgcttgcagggatgctcctagtttcgattgccatctacatgatacagtgcctggcatgtggcagagctcagacaaagaagcttctagcctgaaaaacagtagcaatgcctatgctctgaactttacccgagatcagattggaaatattgcttggtcctatgctgttttaggccaaatggaccgtccgttcttctcagggatctggaaaactctaagtcaatttgaagaacggaaaatctcagatcagtatagagaagatatgatgtttgtttcacaagtttatcttgcaaatcagtctttgaagctagaatacccacatcttgatatgtgcttacgaggtgatcttgaagagaatttaacaaaaactggaaggagcaaacggttcaatcagaagatgacctcctcgtttcaaaaggaggttgggcgtctcctatgtagtacagggcatgaatggaataaagagtatacaattgatggctacactgttgacgcggtgttggttgacgagaagcttgcatttgaaatagacggaccatcacatttctcaaggaatttaggtacacctcgctcgtttttgttgcgtttaatcctgatgtgctatttgttgtatatccacatgctatcatcgtcttgtcctactgaagtggcaaaggagaaactaatgttaaacgtggacttatttttcaggtacaccattaggccacacagcatttaaacgacgttacattgctgctgctggatggaaccttgtttctttatctcatcaagaggttagtcaaagttggaaaatggcaactagtaataattgatctaaatttattctttaatttgttggtgatttgtaatttattttgcaattacacgtaccatacggaattaccatagtatcatatgcaattatctagagactagaaccaaccactaaaaactgtcaccatatatgagcagactagaaccaaccaatatgttcatttgctggagaacaccacatgcatttgtttctgtactttcgctgcgatccatttaaaacatggtctttgtgctcttgaactgtttgaagggacacatgtctgtgttgctttatgctgtgaatttgtgtgttaacggattttctgggcccattgagcagatgaaggatgtttatcattgttttatgatgcatcttaatgtttttgttttatacaacaattgcagtgggagaacctcgaaggcgagtttgagcaattggaatatttgaggcggattttaggttttgatgcagaataagccccatagcaccatattttagcacaagcaacaccattcttgattcttgagagggccaatacaaccaagaacttgtggagtggtggtagtcacgcggataatggtatcagtaaccttgaaagcacatgagcagagtcctggcgctgcttttccctgtgcaggtgaaacgatagtgttcattcataagctgtcttcgaagtattgctcttgaaatctccatctattgaagggtcagatgagaggcttttctttatagccttaacgttaatgacaaaggtttgagagaggaacattaggttctgcaccttacctttatattgacgatttgatactaatttagatttttgtcaatggtgagttttttttgtaagagcaaacctgttgttaccctacaatcatctacctagtgttatttgtctgtaaaatacctcaaagtattgttattgcagtcaaaacatttttattgatgcttacaaaccattcatgtaaatggtcacacttgaactagtgatgcttccatgaatcgtacagattgagcaggcaaccatagttctaggtaaaatagttaatctaatttatgtattctgtttactgtttcaggtatactgcagcggcgaatttttctgtgaacattgtagtggcgaattttctgtgaacattgcagttaaagagtatactgatggacacaattgctagttggtacaactggaggatagaataaatgtagtcttcaaaaaaagaatatgcttcaattttcatctagagttacagttgattatatactacaatttagtttgtgtttatgctatttaaggtgtaatgcttcattctattgatatactgtaacctataataaattctgctggtattttgttataacattcatgctgaggaaacaaagcgtcttctattac
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| CDS seq | atggaagccgctctcctccgtcctcctcccctcgctgcccgaggcggcgtcagcatcgccatcgccttctccgtctctcgactcccttccgccgccgccgccgccgctgcggggaagcccaggaagctcgctccccccgcatgccgctgccgcgccacgccgcaatggcagctcgatttcctgggcgcggaagcggacacggaggcagacggcggcgacgacgacgacgacctcgacctcgacctctccctccccgccgagaccaacgactggtgcgtccgcgcgcgccgctccgctctccgctccatcgaggcgcgtggcctctccccctcgctccagcggatggtggcctcgcccaagaagaagaacaagaagaagaagtccaagaagacgaacttgaagcagaagaaggccgccgagcccaagcctcctcgcgacaccgacgacgatgaggacgacgaggaggaagcggacgatgatctggaggccctcctggcaggagggggtgagctggacgacctcgagctcagggtcgcgcagttcgccgatggcatgttcgacgaaaagcgccagaggaacagggagcagttcatccagacgctctccgccttctcacccgccgcgccgtccaaccggagccaggaggtgtccctcaacaggtccatcgtcgaggctcgcaccgccgacgaggtgctcgcgctcaccgccgaggtggtcgccgccgtggccaaaggcctcagcccgtccccgctcacgccgctcaacatcgccaccgcgctccaccgcatcgccaagaacatggaggcggtgtccatgctacagacgcaccggctcggcttcgcgcgcagcagggacatgtccatgctcgtggggctggcaatggtggccctgccggaatgctcaccgcagggtgtttctaacatctcctgggctttgtccaagattgggggtgacctgctctacttgccggagatggataggattgcccaggtagccatcaccaaggttgacagcttcaatgcacagaatgttgccaatgtagccggatcattcgcttccatgcgccactcagcaccggaccttatctcagcattgacccggagagcagcagaactagtgtacaccttcaaggagcaagagctcgcccagttcttgtggggatgcgcttctcttaacgagtgtccgtatcctctacttgatgcacttgatactgcttgcagggatgctcctagtttcgattgccatctacatgatacagtgcctggcatgtggcagagctcagacaaagaagcttctagcctgaaaaacagtagcaatgcctatgctctgaactttacccgagatcagattggaaatattgcttggtcctatgctgttttaggccaaatggaccgtccgttcttctcagggatctggaaaactctaagtcaatttgaagaacggaaaatctcagatcagtatagagaagatatgatgtttgtttcacaagtttatcttgcaaatcagtctttgaagctagaatacccacatcttgatatgtgcttacgaggtgatcttgaagagaatttaacaaaaactggaaggagcaaacggttcaatcagaagatgacctcctcgtttcaaaaggaggttgggcgtctcctatgtagtacagggcatgaatggaataaagagtatacaattgatggctacactgttgacgcggtgttggttgacgagaagcttgcatttgaaatagacggaccatcacatttctcaaggaatttaggtacaccattaggccacacagcatttaaacgacgttacattgctgctgctggatggaaccttgtttctttatctcatcaagagtgggagaacctcgaaggcgagtttgagcaattggaatatttgaggcggattttaggttttgatgcagaataa
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| Protein seq | MEAALLRPPPLAARGGVSIAIAFSVSRLPSAAAAAAAGKPRKLAPPACRCRATPQWQLDFLGAEADTEADGGDDDDDLDLDLSLPAETNDWCVRARRSALRSIEARGLSPSLQRMVASPKKKNKKKKSKKTNLKQKKAAEPKPPRDTDDDEDDEEEADDDLEALLAGGGELDDLELRVAQFADGMFDEKRQRNREQFIQTLSAFSPAAPSNRSQEVSLNRSIVEARTADEVLALTAEVVAAVAKGLSPSPLTPLNIATALHRIAKNMEAVSMLQTHRLGFARSRDMSMLVGLAMVALPECSPQGVSNISWALSKIGGDLLYLPEMDRIAQVAITKVDSFNAQNVANVAGSFASMRHSAPDLISALTRRAAELVYTFKEQELAQFLWGCASLNECPYPLLDALDTACRDAPSFDCHLHDTVPGMWQSSDKEASSLKNSSNAYALNFTRDQIGNIAWSYAVLGQMDRPFFSGIWKTLSQFEERKISDQYREDMMFVSQVYLANQSLKLEYPHLDMCLRGDLEENLTKTGRSKRFNQKMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRILGFDAE |
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| Function | RAP domain-containing protein, chloroplastic [UniProtKB/Swiss-Prot:Q84MH1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0022200 | OsCMeo_03g0022200.01 | Chr03 | 18369354 | 18372756 | + | NAM | ||
| CDS seq | atggaagccgctctcctccgtcctcctcccctcgctgcccgaggcggcgtcagcatcgccatcgccttctccgtctctcgactcccttccgccgccgccgccgccgctgcggggaagcccaggaagctcgctccccccgcatgccgctgccgcgccacgccgcaatggcagctcgatttcctgggcgcggaagcggacacggaggcagacggcggcgacgacgacgacgacctcgacctcgacctctccctccccgccgagaccaacgactggtgcgtccgcgcgcgccgctccgctctccgctccatcgaggcgcgtggcctctccccctcgctccagcggatggtggcctcgcccaagaagaagaacaagaagaagaagtccaagaagacgaacttgaagcagaagaaggccgccgagcccaagcctcctcgcgacaccgacgacgatgaggacgacgaggaggaagcggacgatgatctggaggccctcctggcaggagggggtgagctggacgacctcgagctcagggtcgcgcagttcgccgatggcatgttcgacgaaaagcgccagaggaacagggagcagttcatccagacgctctccgccttctcacccgccgcgccgtccaaccggagccaggaggtgtccctcaacaggtccatcgtcgaggctcgcaccgccgacgaggtgctcgcgctcaccgccgaggtggtcgccgccgtggccaaaggcctcagcccgtccccgctcacgccgctcaacatcgccaccgcgctccaccgcatcgccaagaacatggaggcggtgtccatgctacagacgcaccggctcggcttcgcgcgcagcagggacatgtccatgctcgtggggctggcaatggtggccctgccggaatgctcaccgcagggtgtttctaacatctcctgggctttgtccaagattgggggtgacctgctctacttgccggagatggataggattgcccaggtagccatcaccaaggttgacagcttcaatgcacagaatgttgccaatgtagccggatcattcgcttccatgcgccactcagcaccggaccttatctcagcattgacccggagagcagcagaactagtgtacaccttcaaggagcaagagctcgcccagttcttgtggggatgcgcttctcttaacgagtgtccgtatcctctacttgatgcacttgatactgcttgcagggatgctcctagtttcgattgccatctacatgatacagtgcctggcatgtggcagagctcagacaaagaagcttctagcctgaaaaacagtagcaatgcctatgctctgaactttacccgagatcagattggaaatattgcttggtcctatgctgttttaggccaaatggaccgtccgttcttctcagggatctggaaaactctaagtcaatttgaagaacggaaaatctcagatcagtatagagaagatatgatgtttgtttcacaagtttatcttgcaaatcagtctttgaagctagaatacccacatcttgatatgtgcttacgaggtgatcttgaagagaatttaacaaaaactggaaggagcaaacggttcaatcagaagatgacctcctcgtttcaaaaggaggttgggcgtctcctatgtagtacagggcatgaatggaataaagagtatacaattgatggctacactgttgacgcggtgttggttgacgagaagcttgcatttgaaatagacggaccatcacatttctcaaggaatttaggtacaccattaggccacacagcatttaaacgacgttacattgctgctgctggatggaaccttgtttctttatctcatcaagagtgggagaacctcgaaggcgagtttgagcaattggaatatttgaggcggattttaggttttgatgcagaataa
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| Protein seq | MEAALLRPPPLAARGGVSIAIAFSVSRLPSAAAAAAAGKPRKLAPPACRCRATPQWQLDFLGAEADTEADGGDDDDDLDLDLSLPAETNDWCVRARRSALRSIEARGLSPSLQRMVASPKKKNKKKKSKKTNLKQKKAAEPKPPRDTDDDEDDEEEADDDLEALLAGGGELDDLELRVAQFADGMFDEKRQRNREQFIQTLSAFSPAAPSNRSQEVSLNRSIVEARTADEVLALTAEVVAAVAKGLSPSPLTPLNIATALHRIAKNMEAVSMLQTHRLGFARSRDMSMLVGLAMVALPECSPQGVSNISWALSKIGGDLLYLPEMDRIAQVAITKVDSFNAQNVANVAGSFASMRHSAPDLISALTRRAAELVYTFKEQELAQFLWGCASLNECPYPLLDALDTACRDAPSFDCHLHDTVPGMWQSSDKEASSLKNSSNAYALNFTRDQIGNIAWSYAVLGQMDRPFFSGIWKTLSQFEERKISDQYREDMMFVSQVYLANQSLKLEYPHLDMCLRGDLEENLTKTGRSKRFNQKMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRILGFDAE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0022200 | OsCMeo_03g0022200.02 | Chr03 | 18369354 | 18372738 | + | NAM | ||
| CDS seq | atggaagccgctctcctccgtcctcctcccctcgctgcccgaggcggcgtcagcatcgccatcgccttctccgtctctcgactcccttccgccgccgccgccgccgctgcggggaagcccaggaagctcgctccccccgcatgccgctgccgcgccacgccgcaatggcagctcgatttcctgggcgcggaagcggacacggaggcagacggcggcgacgacgacgacgacctcgacctcgacctctccctccccgccgagaccaacgactggtgcgtccgcgcgcgccgctccgctctccgctccatcgaggcgcgtggcctctccccctcgctccagcggatggtggcctcgcccaagaagaagaacaagaagaagaagtccaagaagacgaacttgaagcagaagaaggccgccgagcccaagcctcctcgcgacaccgacgacgatgaggacgacgaggaggaagcggacgatgatctggaggccctcctggcaggagggggtgagctggacgacctcgagctcagggtcgcgcagttcgccgatggcatgttcgacgaaaagcgccagaggaacagggagcagttcatccagacgctctccgccttctcacccgccgcgccgtccaaccggagccaggaggtgtccctcaacaggtccatcgtcgaggctcgcaccgccgacgaggtgctcgcgctcaccgccgaggtggtcgccgccgtggccaaaggcctcagcccgtccccgctcacgccgctcaacatcgccaccgcgctccaccgcatcgccaagaacatggaggcggtgtccatgctacagacgcaccggctcggcttcgcgcgcagcagggacatgtccatgctcgtggggctggcaatggtggccctgccggaatgctcaccgcagggtgtttctaacatctcctgggctttgtccaagattgggggtgacctgctctacttgccggagatggataggattgcccaggtagccatcaccaaggttgacagcttcaatgcacagaatgttgccaatgtagccggatcattcgcttccatgcgccactcagcaccggaccttatctcagcattgacccggagagcagcagaactagtgtacaccttcaaggagcaagagctcgcccagttcttgtggggatgcgcttctcttaacgagtgtccgtatcctctacttgatgcacttgatactgcttgcagggatgctcctagtttcgattgccatctacatgatacagtgcctggcatgtggcagagctcagacaaagaagcttctagcctgaaaaacagtagcaatgcctatgctctgaactttacccgagatcagattggaaatattgcttggtcctatgctgttttaggccaaatggaccgtccgttcttctcagggatctggaaaactctaagtcaatttgaagaacggaaaatctcagatcagtatagagaagatatgatgtttgtttcacaagtttatcttgcaaatcagtctttgaagctagaatacccacatcttgatatgtgcttacgaggtgatcttgaagagaatttaacaaaaactggaaggagcaaacggttcaatcagaagatgacctcctcgtttcaaaaggaggttgggcgtctcctatgtagtacagggcatgaatggaataaagagtatacaattgatggctacactgttgacgcggtgttggttgacgagaagcttgcatttgaaatagacggaccatcacatttctcaaggaatttaggtacaccattaggccacacagcatttaaacgacgttacattgctgctgctggatggaaccttgtttctttatctcatcaagagtgggagaacctcgaaggcgagtttgagcaattggaatatttgaggcggattttaggttttgatgcagaataa
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| Protein seq | MEAALLRPPPLAARGGVSIAIAFSVSRLPSAAAAAAAGKPRKLAPPACRCRATPQWQLDFLGAEADTEADGGDDDDDLDLDLSLPAETNDWCVRARRSALRSIEARGLSPSLQRMVASPKKKNKKKKSKKTNLKQKKAAEPKPPRDTDDDEDDEEEADDDLEALLAGGGELDDLELRVAQFADGMFDEKRQRNREQFIQTLSAFSPAAPSNRSQEVSLNRSIVEARTADEVLALTAEVVAAVAKGLSPSPLTPLNIATALHRIAKNMEAVSMLQTHRLGFARSRDMSMLVGLAMVALPECSPQGVSNISWALSKIGGDLLYLPEMDRIAQVAITKVDSFNAQNVANVAGSFASMRHSAPDLISALTRRAAELVYTFKEQELAQFLWGCASLNECPYPLLDALDTACRDAPSFDCHLHDTVPGMWQSSDKEASSLKNSSNAYALNFTRDQIGNIAWSYAVLGQMDRPFFSGIWKTLSQFEERKISDQYREDMMFVSQVYLANQSLKLEYPHLDMCLRGDLEENLTKTGRSKRFNQKMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRILGFDAE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.383464 | 0.0 | 5.700749 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0425000 | RBH | 7.824342 | 6.774128 | 2.005354 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31150 | RBH | 4.881537 | 4.202229 | 0.453540 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0425000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022280 | RBH | 0.888592 | 0.000000 | 2.289924 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022140 | RBH | 0.523365 | 0.377468 | 1.450162 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022190 | RBH | 0.925702 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0021990 | RBH | 15.783356 | 0.000000 | 5.182440 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0292300 | RBH | 34.6655225 | 36.6204835 | 21.4029945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021730 | RBH | 1.351012 | 0.000000 | 0.758150 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0295700 | SBH | 34.304365 | 35.348364 | 62.0536325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0022020 | RBH | 0.285730 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022020 | RBH | 1.359269 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022120 | RBH | 8.020788 | 2.193469 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0021970 | RBH | 1.942939 | 0.000000 | 1.141135 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021820 | RBH | 0.590410 | 0.489815 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021790 | RBH | 0.820663 | 0.311577 | 1.669183 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021700 | RBH | 4.838121 | 0.0 | 2.792300 |
