Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0022180 | OGI:04047560 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:18351811-18354814 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaagtaatttgaatacccaatagttgcatattaacatcatcgccctcagccgtatcagtttgaattgaatatggatcaccaaaacctaaaacatcagaatacaaaagttcaacataaataagttcatggcccataatataagtagcaatgcacaactaaagtaggcttcataccatcggctcgcatccaatcttgaaggcaaaccaatgcctccacagttccactagccaacctactcctatagtcgctaatgattctttatccagtagaaaatgcagactctgatgcaactgaggatgcagggacagcaagcaaatcaagtgccatgcgtgatgatattggatatttgcaagagttcaccctccaccactagagtatgtcaaaatcatcatcagggaaatcattttcttgaggaatatcttcgagatatctagttaactcagtctttactttactcttgctttgatcatgaagatattgcctctagtcagcaaattggctgccaccaacattcaccccactagttgatgcttcttgagaattggttgtgcttggaccacaaatttgtgaagaatattcagcaaaccaagtacggactgtcctcttaattctagggagatatccatttggaccagttgccttatctccaaaacctgctttcagcctaaactcaaggaatttcaacttaaatctgggatcaaaaataacaggaacccaaatctgcaggaactgtagatcccaatatttctgaaattttgtatccattttagaaaccaagctagcaacaagatcatcctcattgttggactcatttagaatcatcaccttcactttccaaaattcatgaaagtagcgagtaacagtgggatatgatgtcccggaaaccacaacagttgcatcatagaagaccttgagatgtttgcaaagaacttctgcattctcccaatcgaaaaattgtggagcatctttaaagttaggatcaaaccgatccaatgaatcaaaagccctcctgaataataaggatgaggaaagcatcaaataggtggaattccaacgagtggagacatcaagtgaaggacgcttctcttcaacaattccgacttgtgcaatgatttcttcaaatttttgctcccgtgcttctgatgctcttacatacttcacactttcccttatcctggatatggcagcactgatagtactcaatccatcttgaacaataggattaaagatgtgagctgcgcaccagaaatgaaatagctctcctttgcaaggcatagcaagtttacccaagagatttcctttcaattccacaaccatagaatcattagtagatgcattgtctactgtaatactgaacaacttactttctatctgccaatcttgaatgcactttataatttcattgaagagagctatactatcatgtggggtacgcacttgagtgaatcttatgatcctcttttgcatattccattcattgtcaatgaagtgacaagttatgcacatgtaacctaggttttgattagatgaccacatgtcagccgtcagtgaaacccgagaatttgttttcctcagtacctcaagcaaagctaacttttgttcttgataggcagccaagcaatcaccctttatagtagttctagaaaccaccctaaagtacgggttcaagcttgcacaaaatcttctaaaaccaaggtgttcaacaaagctggaaggaagttcttgcaaaacaatcatccttaaaagttctgcacgtgctacatcaggatcaaatttccagtcctttagaacaaatgtattaggtgctaaccagaacgatgagtcacaacatgaggtgttggttgacttgattcccttggctgattttcaacatccagctcaaggatagtagacggacttgatacgaaccttgccactggagacagagatctagctcttggagactctgcacttggggacatatgaccaggaacttgtgatctctccatgatgagagcattttgagaaataatttggcgcactcctggagacctgactattggcaatacaataggtgatcgtcttcgcttcgctgtcgaaggattcgatgctgctaactttcgttttgcagacaacaattgtgttgatgatgataagcctcccgaagagccctctgcaatgacctctttgatatatcctccttgcgaagcttcagctaatgatgtcgacatgggagaaaaccaaagtactgcatgtagaacaagatggacagaattttaaaacacacctgaaaggctgaaactaagtactatgacataactcatgtctcatggtgctaaaactgtagctcacaacccagataaaaccaagtagggactccactggacataatctaaaacagaaaatcaagctgagtttaaactcacaacataactaaatagcacacatattttttctgtattaaccgtcctaaaacccatgagaaagagagataaatagttcattgtaaccaaataaagatggccattttgtgtgtgttttttcgttggttatgaaatctcatgtttggcctcttcttcttgtcctcacttcagtcccagaagtacaggaagtcaaagaacatcaaagcaaagtaagtactactaatcgacgagataatatccatgagaaatcaaaccaaaaacatggaagtggattggacgagacatgctactaatcgatgaggcattgctagtttgattatgcctcatctgccacccacggcgttctttcccaatcgactccagtgcttaaacaagaaaaaaaatgaagaggcaagaactcacctgagccgagagaggggaaggacgaggcgtgctggcgccgcggcggcggaggacgacgagcaactgagcaaggcggcggcggcggacggcgagcgagcgagcgaggcggcggacggcgagcgagcgagcgaggcggcggaccggcggcagagatggcgagccgctccaggctcgatctcgcatgtggaaacgccgaact
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| CDS seq | atgtcgacatcattagctgaagcttcgcaaggaggatatatcaaagaggtcattgcagagggctcttcgggaggcttatcatcatcaacacaattgttgtctgcaaaacgaaagttagcagcatcgaatccttcgacagcgaagcgaagacgatcacctattgtattgccaatagtcaggtctccaggagtgcgccaaattatttctcaaaatgctctcatcatggagagatcacaagttcctggtcatatgtccccaagtgcagagtctccaagagctagatctctgtctccagtggcaaggttcgtatcaagtccgtctactatccttgagctggatgttgaaaatcagccaagggaatcaagttttggtgatccatattcaattcaaactgatacggctgagggcgatgatgttaatatgcaactattgggtattcaaattacttga
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| Protein seq | MSTSLAEASQGGYIKEVIAEGSSGGLSSSTQLLSAKRKLAASNPSTAKRRRSPIVLPIVRSPGVRQIISQNALIMERSQVPGHMSPSAESPRARSLSPVARFVSSPSTILELDVENQPRESSFGDPYSIQTDTAEGDDVNMQLLGIQIT |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0022180 | OsCMeo_03g0022180.01 | Chr03 | 18351811 | 18354814 | - | NAM | ||
| CDS seq | atgtcgacatcattagctgaagcttcgcaaggaggatatatcaaagaggtcattgcagagggctcttcgggaggcttatcatcatcaacacaattgttgtctgcaaaacgaaagttagcagcatcgaatccttcgacagcgaagcgaagacgatcacctattgtattgccaatagtcaggtctccaggagtgcgccaaattatttctcaaaatgctctcatcatggagagatcacaagttcctggtcatatgtccccaagtgcagagtctccaagagctagatctctgtctccagtggcaaggttcgtatcaagtccgtctactatccttgagctggatgttgaaaatcagccaagggaatcaagttttggtgatccatattcaattcaaactgatacggctgagggcgatgatgttaatatgcaactattgggtattcaaattacttga
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| Protein seq | MSTSLAEASQGGYIKEVIAEGSSGGLSSSTQLLSAKRKLAASNPSTAKRRRSPIVLPIVRSPGVRQIISQNALIMERSQVPGHMSPSAESPRARSLSPVARFVSSPSTILELDVENQPRESSFGDPYSIQTDTAEGDDVNMQLLGIQIT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.436592 | 2.564105 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0424600 | RBH | 1.862925 | 1.018764 | 1.498947 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0424600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0295800 | RBH | 0.7615785 | 1.1715715 | 3.5290255 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
