Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0016140 | OGI:03031980 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:11989616-11991475 | ||||||||
| Gene Symbol | CUC1, ONAC039, ONAC39, NAC39, OsCUC1, DLN86, OsDLN86 | ||||||||||
| DNA seq | aaggctaaaccgaagcatcaattcacatatgatgagatgtctagctcaagcaattaatggtacatgtacatagtataaagctttataaagctagcagctagctggctcatcaaatgccaaattaatcaattcgtaaatgatcaatccacccctaatctacaccccattgattgtagtataatcaatcatcatgctactagacacaatcaggataccccgtacttagtagtagtaattgtatttacatcagatcaagacatgaagaaacctagctagctaggattaattaacaaggagtcctagctaatccctggaggtctggatggatgataaataatctgatcatccgaacccatcccgagaagaagccttcgatcggaaggaggaagagaaggatgcatcaacaaactgccactaattaacccaagcatgaaacaccaagttaattaatcaaatcaagtaattaatcaaccagcctgaagcaaaatcctgtagcgcaaggtcggtagggagctagctccggatcattcaggcgtggattagttccagaagtcgtcgaggcccagaatcccgtcgtcgaactccgggaacggctgggacgtcggcgccgacgagatctccgcgcagccggcggcgttggggtcggtgctgagcccggtgtcgcgcgaggcgctgagcgccgacgtctgccccgagacctgctccgccttgcagtacctccggatcgccgacggcgtcaggtcgccggggtgcaccgccgggagcgagaagtactgacccgagtgcagcatccgcggcggctgctggtgcaggtacggcagcggcaacggctcttccatcttgacctgctggtagctcatgacctgcgacgcgacatggaagccggcggcgatcgcggcctgcccggaggtcgacgcggacaccttggcgtcgtccaccccgtcgatgtcggcgacgaaggaagggtccatcagcggcggcagctcggcggggtcgatgaagtcgctgaggaagctgaacgagccgacccgctcgatccccgcgtcgtcggcggtcgcttcggtcaccgccattggcccgttcttcgccgccagcgccaactccttgttgaacaccttgcacaccgcccactggtcctgttcgcaaacaaacgcgtcgaggaaagatgaggaatcagcacatcgaccgagaaaggaaggaaattttcaaactttggagaagtaagcagaagcgagagtagcatggcaaggcaaggacgcaacggccggaccttggcggagcgcgggagctggctggggagcttgccctcgaggcggaactcgtgcatcacccagccggtcttctcgccacggggcgcgcggccgaggtagaagacgagcgtcttcttcatgccgacgaggatgcccctcccgcggaagatctccttgtccttgccggtggccttccagtagccgctctccgtcgcccggttcgtcctcgtcccggtcgggtacttgcggtccttgtggcagaagaagtaccactccttctcccccatcttcgccatggctgccaaaaatcaaaccacgcaaactcatccgtaagcccaaagatttatcgtacgaacgaatcaaggggagaaaaaaaaggagagaattcaggaacaaacctgggaggtgccatggctcgcacttgttgaggtcgacgtcgccgatgacgccggaggagaagcggtggttgagggccttgggggtgaggtagtgcgagacgatctcctcgtcggtggggtggaacctgaaccccggcggcaggtccagcggcgccgccgccgccgtctcctccacctcggccataacggacacctcagacatctcctccgcc
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| CDS seq | atgtctgaggtgtccgttatggccgaggtggaggagacggcggcggcggcgccgctggacctgccgccggggttcaggttccaccccaccgacgaggagatcgtctcgcactacctcacccccaaggccctcaaccaccgcttctcctccggcgtcatcggcgacgtcgacctcaacaagtgcgagccatggcacctcccagccatggcgaagatgggggagaaggagtggtacttcttctgccacaaggaccgcaagtacccgaccgggacgaggacgaaccgggcgacggagagcggctactggaaggccaccggcaaggacaaggagatcttccgcgggaggggcatcctcgtcggcatgaagaagacgctcgtcttctacctcggccgcgcgccccgtggcgagaagaccggctgggtgatgcacgagttccgcctcgagggcaagctccccagccagctcccgcgctccgccaaggaccagtgggcggtgtgcaaggtgttcaacaaggagttggcgctggcggcgaagaacgggccaatggcggtgaccgaagcgaccgccgacgacgcggggatcgagcgggtcggctcgttcagcttcctcagcgacttcatcgaccccgccgagctgccgccgctgatggacccttccttcgtcgccgacatcgacggggtggacgacgccaaggtgtccgcgtcgacctccgggcaggccgcgatcgccgccggcttccatgtcgcgtcgcaggtcatgagctaccagcaggtcaagatggaagagccgttgccgctgccgtacctgcaccagcagccgccgcggatgctgcactcgggtcagtacttctcgctcccggcggtgcaccccggcgacctgacgccgtcggcgatccggaggtactgcaaggcggagcaggtctcggggcagacgtcggcgctcagcgcctcgcgcgacaccgggctcagcaccgaccccaacgccgccggctgcgcggagatctcgtcggcgccgacgtcccagccgttcccggagttcgacgacgggattctgggcctcgacgacttctggaactaa
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| Protein seq | MSEVSVMAEVEETAAAAPLDLPPGFRFHPTDEEIVSHYLTPKALNHRFSSGVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFRGRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLEGKLPSQLPRSAKDQWAVCKVFNKELALAAKNGPMAVTEATADDAGIERVGSFSFLSDFIDPAELPPLMDPSFVADIDGVDDAKVSASTSGQAAIAAGFHVASQVMSYQQVKMEEPLPLPYLHQQPPRMLHSGQYFSLPAVHPGDLTPSAIRRYCKAEQVSGQTSALSASRDTGLSTDPNAAGCAEISSAPTSQPFPEFDDGILGLDDFWN |
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| Function | NAC domain-containing protein 46 [UniProtKB/Swiss-Prot:Q9SQQ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0016140 | OsCMeo_03g0016140.01 | Chr03 | 11989616 | 11991475 | - | NAM | ||
| CDS seq | atgtctgaggtgtccgttatggccgaggtggaggagacggcggcggcggcgccgctggacctgccgccggggttcaggttccaccccaccgacgaggagatcgtctcgcactacctcacccccaaggccctcaaccaccgcttctcctccggcgtcatcggcgacgtcgacctcaacaagtgcgagccatggcacctcccagccatggcgaagatgggggagaaggagtggtacttcttctgccacaaggaccgcaagtacccgaccgggacgaggacgaaccgggcgacggagagcggctactggaaggccaccggcaaggacaaggagatcttccgcgggaggggcatcctcgtcggcatgaagaagacgctcgtcttctacctcggccgcgcgccccgtggcgagaagaccggctgggtgatgcacgagttccgcctcgagggcaagctccccagccagctcccgcgctccgccaaggaccagtgggcggtgtgcaaggtgttcaacaaggagttggcgctggcggcgaagaacgggccaatggcggtgaccgaagcgaccgccgacgacgcggggatcgagcgggtcggctcgttcagcttcctcagcgacttcatcgaccccgccgagctgccgccgctgatggacccttccttcgtcgccgacatcgacggggtggacgacgccaaggtgtccgcgtcgacctccgggcaggccgcgatcgccgccggcttccatgtcgcgtcgcaggtcatgagctaccagcaggtcaagatggaagagccgttgccgctgccgtacctgcaccagcagccgccgcggatgctgcactcgggtcagtacttctcgctcccggcggtgcaccccggcgacctgacgccgtcggcgatccggaggtactgcaaggcggagcaggtctcggggcagacgtcggcgctcagcgcctcgcgcgacaccgggctcagcaccgaccccaacgccgccggctgcgcggagatctcgtcggcgccgacgtcccagccgttcccggagttcgacgacgggattctgggcctcgacgacttctggaactaa
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| Protein seq | MSEVSVMAEVEETAAAAPLDLPPGFRFHPTDEEIVSHYLTPKALNHRFSSGVIGDVDLNKCEPWHLPAMAKMGEKEWYFFCHKDRKYPTGTRTNRATESGYWKATGKDKEIFRGRGILVGMKKTLVFYLGRAPRGEKTGWVMHEFRLEGKLPSQLPRSAKDQWAVCKVFNKELALAAKNGPMAVTEATADDAGIERVGSFSFLSDFIDPAELPPLMDPSFVADIDGVDDAKVSASTSGQAAIAAGFHVASQVMSYQQVKMEEPLPLPYLHQQPPRMLHSGQYFSLPAVHPGDLTPSAIRRYCKAEQVSGQTSALSASRDTGLSTDPNAAGCAEISSAPTSQPFPEFDDGILGLDDFWN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.433125 | 17.606798 | 2.847662 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0327100 | RBH | 2.118564 | 2.696862 | 1.329730 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21030 | RBH | 1.425536 | 1.804816 | 0.340591 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0327100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016280 | RBH | 0.323857 | 20.800581 | 2.524937 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016120 | RBH | 0.079007 | 5.678682 | 0.881656 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0027900 | RBH | 0.761107 | 17.610842 | 3.987221 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016130 | RBH | 0.244225 | 0.414904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0015930 | RBH | 0.000000 | 8.868603 | 0.927996 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0198500 | RBH | 6.2611055 | 14.639058 | 58.558403 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0015810 | RBH | 0.339539 | 0.957130 | 0.136635 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0202600 | RBH | 6.0305925 | 33.0564235 | 0.60598 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0016070 | RBH | 0.109000 | 0.183853 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016080 | RBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016110 | RBH | 0.0 | 15.829589 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016000 | RBH | 0.177690 | 1.595067 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0015930 | RBH | 0.262882 | 9.451824 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G015880 | RBH | 0.472229 | 0.786245 | 1.085648 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0015780 | RBH | 0.000000 | 43.636696 | 4.623311 |
