Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0010300 | OGI:03019800 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:7532862-7538524 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gactcccgtctcgtctcctcgcgagctcgcccacccgccgccctgcgccgatctccatcgattccgcgacttcgcgagcagtggcgccgtcgtccgtcctgctgcttccgccgcatcctggtgagcaccccgatcagtatgcctcatgctctttctcatctctctgtaccctacgaacccttttctcgaatttgcgtgcgttaaccctagcttctgttctagatctgaaatttccccttaatttgccttaaccttagtactattaacagtttgtttgttcgcgaaaaaggtttgggggttcaactgaaccccctatgtccctcgttagatccgcccctgcccggcaatgggcagcatggacacgccaagaggaacaaaattttttcaatgcgctgcgccaagtagggaaggtaagacacatacgttcttgatgcaatgttgtgctgttcttgcgaattactgcgtttgtgcactaatcgattgatgcgtgatgtcttgtcctttgtgtcagaattttgagaagattacgctgcgtgtccagagcaaaagcaaagatcaggtacaccatcttcagacaagaactattttatgatgtttaatttctgttattaacaaattaggaatttaaagcagaggtcgatatgtttagatcgtaaatttagtacgcctttatgatacttgtcattatttatttaactgattacccggggtcttctggctagcatcacaaggtggtggtctagccggtcagggttcgagcctcattcctcttaataaattccgatataagagcccctcctctcatatccaacgttatttaactgattaggaaagtcgaaggagaggaagattcgcattaggcagtaaattttaattctatgaactgttgtaaaggactttcccttcgacgggatgtcaattagagttgagtaaatgaattttacgttgagaaaaaagattacaagtaaccggcgtagggaaactacatttccaaatatggcctttgttgttgcttgacatagtgccagtatcccttcagcatatacgtaccatttccgttgatttcgtgggagaagggtgagtggattgcaatctccatccttgcattcccatcaggattaggtactttcacttgcagcagatctctcttcctgacttgctgttacatacaactgattcgacttattttccatccttaagtttgtataggtgatgctgttatgggcaactccaactttcgagcatggtgcaaagaaccggcactatgttttgtttaggtttagttgtatcttagtactatccccttggatagatagaatgaagtgaggtactttcctcaccatcttagcacaagccttatagcacaagtcgcacacctcacctaatatgctgcacctggaatagcttgaggaattttcccacagtgcgtgttgcctgatcgtctaagtgttccctgtgaactacgatgtgtatgctttaaagcggtaaacaccaaaaggtcaaaacagttctctctacgacaattgattgtcttttacaccatcatatgggtagcataatttgtaacagatgcttcattgtatataaacaatatttgcataaactagagaacacctgaatgtctgccattggcatgaagattcactgtattttcaacttttcacattacaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttctcggtcctgagttctcgctcgatgcaaaaaattccaaggacaccattgctgctatgctctgctggtaattaaatgaatccctacgtgcaaatcaatctgattaggtgtgctttaagcttcttgttctattaatttatatatatagcatgattgcaaaaggtagtatttgatctcacaatatcgctgaggtatctttgcgatatatattcttttcctagtaggctaagaacgcacataccttatctttttagtttatagaggacgaggctataattttattttaccttattacagttatgggtcactgctgtaatacctagagtgctagaactattgggccttcgtgctgatattgtgtatacaccttatcatgtttggtgcctatattttaaaactgtcagaactgttcaatcaaaatggtttctgagctttggaaaaaaaatcatatttctgagttcagaatatgattctgaacaaagaaaaagtcttttgatgacaaaaattgcacaactgagaatgtacttttacgattaggagtgcttggatcagcagggagggcttttaacattttttattctgatgcagaatgccctcttgtctatgtgcaagatgggagagaataccgtttgttgcttattgtcattgcttttgatttgatcctatgatgcttccttttacactgcatggaaaactctcagatactaacttggttttatgcaggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaactttcgtagaagcattggtttgttacagcacttgttattctcccagcttttcataattgtaggaactgttctttttttttatttagttttttttctcatgtgatatatccaactttatagggaaatcaactactaaaggatagaaataaaaccagaaaaaagtgtccacgtggggatgtgtgcctgtcctcttcatcttcggctgtcaacaggactcctggaaatgaatctttctcagtaaaactcttggctgtggatgtctccaatggtagcaaagtaggatcttctaaagggtcatttttcaaaaaggtcacagaaccaaattgcagtaacaagtcaggtgcaactaaaggggacctctccgccacaagaactgtgaaacagaaaagaagagcaggttacaatgccatttttcttttggtttgatatggtttagcttactcatattttgtcttatgcaatatgcagtttgtatgttttagcagctaagccttgacaataaaatatattatatgaagaccatatagtgttgagctttcctcacattagttttgagagcagctgacctgtgttttaggtggtgttgttgcatctgctgcatataaaaaatgggagagagctgccatggctggtgtttctttggttgctgatgcagctgaagagcttgagcgcaacacagtgaacgctgatgcaagaatgttatctccatcatcaagcaatgcctgcacagttgatggtactatttcataccattgctttgtacttcctatatttactacactatgtttctatgctttcttgactataaatggctgggtcttgatgttttattctacattggcaggtcttggcacaaatcatataaaggaagcagatcaacaagcacctgcaaagctaaagttgcagctatttccaataaatgaagctacacgaaaggcattagagaaggtaaatatgtctctttgttgctagcaaactgcaatatgaaattatgaatcacagtgctataggttaactattggctcaaacactcagatccctgtggttgataaaatttcttctgataaatggaatcaaacggaacgtggagcacaaataacctgattagggcttttgcgttatgaattttctatcgtgtctgatatattctgttcagttttcatatgttagcagtttggacatgatatgacagtcctgtctctttttgacaggatgaacataatccacatctggaactcacattaagtgctaggaaaaaaatatcatcagtactagaacatttgaaccgcaagtggggcaactcaaacattgcatctggagagcttttgctttttccatattgtgctcatcaagaagatttagctacatatcagaggtggaccacaaaagatactgtcgcagtggctgacgttttcctttctgtgaatagcccatctgtttttcgattaaggtacggattttcagtgtagtaaacgaactataatattgtaatacatggggcaataataacaaatactaactgttgttccaactttttgtcaataaggtatggttggttttcccttgctgagcttgaagcaggcgtaagtgaaatatctttgactcattttgagaattgcttgatacctgaagacatccatgccaaatctcccttagaggcttgtgtgcaaaaggatggtaattcgctcagtagttgtgctcctgagcaacacccttgtggttcgaaagatcagtcagcattattgtttgctatgccatctagtacaggcaagagtgctcaggtgccagagcagtgcattgatgttctcccctcacagtttggcaggcagaatcaagaccaagttaccacgaaccaagtttttgaggtactacagttttgtgcatacttttgtcaagtgaacattccagtgataatcgtgtatcttctaattgtttctgtacttcaggttgatcaagggatggattgtgctgcagtatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactgacagaagcttccagaggtgctaatactgattgtccagggacatctgttgtcaaaaacacactgttgcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcatgcttctcgttataaatcagcagagcagccagcccttgcatcccattcaaccatctggggtgctgaagaaacctgtgacgcattcagttttaacctaccagcatctaggaagcgagaaggttcaaataattcagctagcagctctcccgatagtgacagtgatgttcatccttcaaactcagaagggtttcaatgttttcttcaggtttgttccatttattgatccaacctagaataataaacatttttttatacatagtattgttaatttatgacttatttggtgttgcaggacttagctggagcggcggttgctcataatccttgtattgacgatgccaaagatgtagagtcactttgtgctgaatcgccacctcgaagtgaccacgattctgctccgaaggatcaatctctagctgacttatactgggtactatacaaatgtcctatccatacctgttttcttttcatggtgtaatgctcataactaaacaatcttctctcctgacagcctgattcacttggaccattggacttggacataccgtccgcgacataccatgctgatgacttactcctaggggacagccagaatagttggaaccgcatgatggcgaatagcctggatgcatttcgaaacctgtcgttcttcacggcagataagaatgactcgataccatccatcatgtagagctctgaatactggtgcttccttcatgcgcttgcgtggtgaaattgctacgttggctacgaaggtttaccgccaacgatgctgtgcatctcgctgaagaggctttatattgtccaagtgagctgtttgtggctagatccaacagctgcggacttgctgtgcgtttgcagtcaagagggacgcatgttgttgtaaagtagtaacataagagctgttcgtgctaacatgtatgtcgtgtaaattgtggtgttcctgtaaaaaaaaaaagctcacacaatcgcttggttacaataaagcttctcctgccgtgtaccagatcaa
More
|
||||||||||
| CDS seq | atgtccctcgttagatccgcccctgcccggcaatgggcagcatggacacgccaagaggaacaaaattttttcaatgcgctgcgccaagtagggaagaattttgagaagattacgctgcgtgtccagagcaaaagcaaagatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttctcggtcctgagttctcgctcgatgcaaaaaattccaaggacaccattgctgctatgctctgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaactttcgtagaagcattgggaaatcaactactaaaggatagaaataaaaccagaaaaaagtgtccacgtggggatgtgtgcctgtcctcttcatcttcggctgtcaacaggactcctggaaatgaatctttctcagtaaaactcttggctgtggatgtctccaatggtagcaaagtaggatcttctaaagggtcatttttcaaaaaggtcacagaaccaaattgcagtaacaagtcaggtgcaactaaaggggacctctccgccacaagaactgtgaaacagaaaagaagagcaggtggtgttgttgcatctgctgcatataaaaaatgggagagagctgccatggctggtgtttctttggttgctgatgcagctgaagagcttgagcgcaacacagtgaacgctgatgcaagaatgttatctccatcatcaagcaatgcctgcacagttgatggtcttggcacaaatcatataaaggaagcagatcaacaagcacctgcaaagctaaagttgcagctatttccaataaatgaagctacacgaaaggcattagagaaggatgaacataatccacatctggaactcacattaagtgctaggaaaaaaatatcatcagtactagaacatttgaaccgcaagtggggcaactcaaacattgcatctggagagcttttgctttttccatattgtgctcatcaagaagatttagctacatatcagaggtggaccacaaaagatactgtcgcagtggctgacgttttcctttctgtgaatagcccatctgtttttcgattaaggtatggttggttttcccttgctgagcttgaagcaggcgtaagtgaaatatctttgactcattttgagaattgcttgatacctgaagacatccatgccaaatctcccttagaggcttgtgtgcaaaaggatggtaattcgctcagtagttgtgctcctgagcaacacccttgtggttcgaaagatcagtcagcattattgtttgctatgccatctagtacaggcaagagtgctcaggtgccagagcagtgcattgatgttctcccctcacagtttggcaggcagaatcaagaccaagttaccacgaaccaagtttttgaggttgatcaagggatggattgtgctgcagtatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactgacagaagcttccagaggtgctaatactgattgtccagggacatctgttgtcaaaaacacactgttgcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcatgcttctcgttataaatcagcagagcagccagcccttgcatcccattcaaccatctggggtgctgaagaaacctgtgacgcattcagttttaacctaccagcatctaggaagcgagaaggttcaaataattcagctagcagctctcccgatagtgacagtgatgttcatccttcaaactcagaagggtttcaatgttttcttcaggacttagctggagcggcggttgctcataatccttgtattgacgatgccaaagatgtagagtcactttgtgctgaatcgccacctcgaagtgaccacgattctgctccgaaggatcaatctctagctgacttatactggcctgattcacttggaccattggacttggacataccgtccgcgacataccatgctgatgacttactcctaggggacagccagaatagttggaaccgcatgatggcgaatagcctggatgcatttcgaaacctgtcgttcttcacggcagataagaatgactcgataccatccatcatgtag
More
|
||||||||||
| Protein seq | MSLVRSAPARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKDRNKTRKKCPRGDVCLSSSSSAVNRTPGNESFSVKLLAVDVSNGSKVGSSKGSFFKKVTEPNCSNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWERAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDGLGTNHIKEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLLFPYCAHQEDLATYQRWTTKDTVAVADVFLSVNSPSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSPLEACVQKDGNSLSSCAPEQHPCGSKDQSALLFAMPSSTGKSAQVPEQCIDVLPSQFGRQNQDQVTTNQVFEVDQGMDCAAVSEGEWADTLTDISVGYLLTEASRGANTDCPGTSVVKNTLLLENPCSYDSFDAAVALHASRYKSAEQPALASHSTIWGAEETCDAFSFNLPASRKREGSNNSASSSPDSDSDVHPSNSEGFQCFLQDLAGAAVAHNPCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYWPDSLGPLDLDIPSATYHADDLLLGDSQNSWNRMMANSLDAFRNLSFFTADKNDSIPSIM |
||||||||||
| Function | TSL-kinase interacting protein 1 [UniProtKB/Swiss-Prot:Q8LJT8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0010300 | OsCMeo_03g0010300.01 | Chr03 | 7532875 | 7538524 | + | NAM | ||
| CDS seq | atgtccctcgttagatccgcccctgcccggcaatgggcagcatggacacgccaagaggaacaaaattttttcaatgcgctgcgccaagtagggaagaattttgagaagattacgctgcgtgtccagagcaaaagcaaagatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttctcggtcctgagttctcgctcgatgcaaaaaattccaaggacaccattgctgctatgctctgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaactttcgtagaagcattgggaaatcaactactaaaggatagaaataaaaccagaaaaaagtgtccacgtggggatgtgtgcctgtcctcttcatcttcggctgtcaacaggactcctggaaatgaatctttctcagtaaaactcttggctgtggatgtctccaatggtagcaaagtaggatcttctaaagggtcatttttcaaaaaggtcacagaaccaaattgcagtaacaagtcaggtgcaactaaaggggacctctccgccacaagaactgtgaaacagaaaagaagagcaggtggtgttgttgcatctgctgcatataaaaaatgggagagagctgccatggctggtgtttctttggttgctgatgcagctgaagagcttgagcgcaacacagtgaacgctgatgcaagaatgttatctccatcatcaagcaatgcctgcacagttgatggtcttggcacaaatcatataaaggaagcagatcaacaagcacctgcaaagctaaagttgcagctatttccaataaatgaagctacacgaaaggcattagagaaggatgaacataatccacatctggaactcacattaagtgctaggaaaaaaatatcatcagtactagaacatttgaaccgcaagtggggcaactcaaacattgcatctggagagcttttgctttttccatattgtgctcatcaagaagatttagctacatatcagaggtggaccacaaaagatactgtcgcagtggctgacgttttcctttctgtgaatagcccatctgtttttcgattaaggtatggttggttttcccttgctgagcttgaagcaggcgtaagtgaaatatctttgactcattttgagaattgcttgatacctgaagacatccatgccaaatctcccttagaggcttgtgtgcaaaaggatggtaattcgctcagtagttgtgctcctgagcaacacccttgtggttcgaaagatcagtcagcattattgtttgctatgccatctagtacaggcaagagtgctcaggtgccagagcagtgcattgatgttctcccctcacagtttggcaggcagaatcaagaccaagttaccacgaaccaagtttttgaggttgatcaagggatggattgtgctgcagtatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactgacagaagcttccagaggtgctaatactgattgtccagggacatctgttgtcaaaaacacactgttgcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcatgcttctcgttataaatcagcagagcagccagcccttgcatcccattcaaccatctggggtgctgaagaaacctgtgacgcattcagttttaacctaccagcatctaggaagcgagaaggttcaaataattcagctagcagctctcccgatagtgacagtgatgttcatccttcaaactcagaagggtttcaatgttttcttcaggacttagctggagcggcggttgctcataatccttgtattgacgatgccaaagatgtagagtcactttgtgctgaatcgccacctcgaagtgaccacgattctgctccgaaggatcaatctctagctgacttatactggcctgattcacttggaccattggacttggacataccgtccgcgacataccatgctgatgacttactcctaggggacagccagaatagttggaaccgcatgatggcgaatagcctggatgcatttcgaaacctgtcgttcttcacggcagataagaatgactcgataccatccatcatgtag
More
|
|||||||
| Protein seq | MSLVRSAPARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSKSKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLKPRRFKTFVEALGNQLLKDRNKTRKKCPRGDVCLSSSSSAVNRTPGNESFSVKLLAVDVSNGSKVGSSKGSFFKKVTEPNCSNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWERAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDGLGTNHIKEADQQAPAKLKLQLFPINEATRKALEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLLFPYCAHQEDLATYQRWTTKDTVAVADVFLSVNSPSVFRLRYGWFSLAELEAGVSEISLTHFENCLIPEDIHAKSPLEACVQKDGNSLSSCAPEQHPCGSKDQSALLFAMPSSTGKSAQVPEQCIDVLPSQFGRQNQDQVTTNQVFEVDQGMDCAAVSEGEWADTLTDISVGYLLTEASRGANTDCPGTSVVKNTLLLENPCSYDSFDAAVALHASRYKSAEQPALASHSTIWGAEETCDAFSFNLPASRKREGSNNSASSSPDSDSDVHPSNSEGFQCFLQDLAGAAVAHNPCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYWPDSLGPLDLDIPSATYHADDLLLGDSQNSWNRMMANSLDAFRNLSFFTADKNDSIPSIM
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0010300 | OsCMeo_03g0010300.02 | Chr03 | 7532862 | 7538522 | + | IsoSeq | ||
| CDS seq | atggtaattcgctcagtagttgtgctcctgagcaacacccttgtggttcgaaagatcagtcagcattattgtttgctatgccatctagtacaggcaagagtgctcaggtgccagagcagtgcattgatgttctcccctcacagtttggcaggcagaatcaagaccaagttaccacgaaccaagtttttgaggttgatcaagggatggattgtgctgcagtatctgaaggagagtgggcagatacccttactgatatcagtgttggatact
More
|
|||||||
| Protein seq | MVIRSVVVLLSNTLVVRKISQHYCLLCHLVQARVLRCQSSALMFSPHSLAGRIKTKLPRTKFLRLIKGWIVLQYLKESGQIPLLISVLDT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 7532981 | 7533151 | + | OsCMeo_03g0010300.02 | OsCMeo_03g0010300.01,OsCMeo_03g0010300.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.796831 | 10.911317 | 12.635080 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0241100 | RBH | 1.800828 | 3.556418 | 7.431115 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13790 | RBH | 1.164375 | 2.271452 | 1.748814 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0241100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0010380 | RBH | 0.988685 | 18.295923 | 9.251667 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0010200 | RBH | 0.623159 | 3.665753 | 2.257968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036140 | RBH | 0.310524 | 3.284971 | 6.400639 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0010200 | RBH | 0.424902 | 0.415690 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0010080 | RBH | 12.588860 | 10.924556 | 18.644547 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0546000 | SBH | 3.8593855 | 8.501191 | 4.8348 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009980 | RBH | 0.629907 | 0.618080 | 1.419527 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0123000 | RBH | 15.322498 | 17.8765735 | 30.4635045 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0010110 | RBH | 0.556833 | 0.087322 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0010200 | RBH | 1.017361 | 5.971131 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0010090 | RBH | 10.559282 | 6.796973 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0010160 | RBH | 1.990169 | 1.504770 | 2.189507 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0010110 | RBH | 0.792561 | 7.965183 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G010130 | RBH | 1.023360 | 1.000323 | 4.385910 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010000 | RBH | 3.119831 | 13.301453 | 9.152287 |
