Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0009930 | OGI:03018760 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:7199356-7201601 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcgtcgcgctcgcgcgccgtctcctccggcttcacgaaggcgccgaccttctccgtcaccaccgcgtcgcagctccacgacgccatcgaccgcctcctcccgcggctacgcggcgacccgtccctcgcccccgccgcgcgcgcgctcgccgcggcagccaccgcctcgctgccgcccTccaccgtcctctccaaccgcctcctccacctgctctcctcccacccagccaccctccccgacgcgctcgcgctcttctcctccatcgcggccccggacatctgctcccacaacaccctcatctccgcgctctctcgctccccgcgccacctcccctccgcgcgggagctgttcgaccgaatgccccagagggatcacttcgcctggtccgccctcgtctcaggttacacccgacacggccagcccgaggccgcgctcgcgctctaccggcggatgcaggaggagccggggaacgatggcgcggacaacgagttcaccgcgtccagcgcgctcgcggcggccgcggccgcacggtgcggccgcgcgggcagggagctgcactgccacgtcgtgaggagagggatcgacgccgccggcggcgacgccgtcctgtggagcgcgctcgcggacatgtacgccaagtgcggccgcgtggacgacgcgaggagggtcttcgaccggatgccggtccgggacgccgtctcctggacggcgatggtggagaggtacttcgacggcggccgcggcggggaagggttcaggctgttcctccacatgctgaggacccgaggtgttcgaccaaacgagttcacctacgcgggggttctgcgcgcctgcgcacagttcgccgtcgagagcttcgggaggcaggtgcacggccggatggcgaagagcggcactggagactcctgcttcgcggagagcgcgctcctccgcatgtactccaagtgcggcgacatggggagcgcggtgcgcgtgtttgaggccatggcgaagccggacttggtgtcgtggacggcggtgatctccggctatgcgcagaacgggcagccggaggaggcgctgcgctacttcgacatgttcttgaggtctggaattaagcctgatcatgtcacttttgttggtgttctgtcagcgtgtgctcatgccggcctggtcgacaagggcctcgagatcttccattcgattaaggaacagtattgcattgagcacactgctgatcattacgcttgcgtgatcgatctcctaagccggtcaggccaatttgagcgagcagaaaagatgataggtaatatggcagtgaaacctaacaagttcctatgggcgtccttgcttggtggctgccggattcacaagaatgttggcttggcaaggcgggcagcagaagcattgttcgaaatagaacccgagaatccagcaacttatgtaactctggcaaatatttatgcctcggttggtctttttgatgaggttgaggatgtcagaagaatcatggaatcaaagggtataaccaaaatgccggcctcaagttggattgaagttgggagaagagttcatgtgttcctagttggtgataaatcgcatcctaaagctgatgaaatctatgcacttctgaagaagctgtatgtgaaaatggtggaagaagggtatgtggcggacattgaatttgttctccatgatgtcgaagatgagcagaaggagcaggacattggctaccacagcgagcggcttgctgttgcatttgggatcattgccactccggagggttccccgatcaaggttttcaagaacctgcgcatttgcggggactgccatgctgctattaagctcatatcgcagattgtgcagagagatatcattgttagggactcgaataggttccatcacttcaaggacgggatatgttcttgcagagattactggtgacccgcacactgcatatatgaagtagttttgtctcccgattggagctactattactctttgtacggctaatgttaatatgcggcagcaactgatctgaccaaaggttttcactggttcgagtgattaagttctggaaaagaaattccttgtcaggctgaccctaggtaaacggtctcaccttttatcattcgtgcctatcctgatgaaagtttatgttatgtacgttcgctttattttattaacatatcctgtaaatatgttcattttttgtttgattgttgattgggggttagtaataaagcaatagaattgaaggggtg
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| CDS seq | atggcgtcgcgctcgcgcgccgtctcctccggcttcacgaaggcgccgaccttctccgtcaccaccgcgtcgcagctccacgacgccatcgaccgcctcctcccgcggctacgcggcgacccgtccctcgcccccgccgcgcgcgcgctcgccgcggcagccaccgcctcgctgccgcccTccaccgtcctctccaaccgcctcctccacctgctctcctcccacccagccaccctccccgacgcgctcgcgctcttctcctccatcgcggccccggacatctgctcccacaacaccctcatctccgcgctctctcgctccccgcgccacctcccctccgcgcgggagctgttcgaccgaatgccccagagggatcacttcgcctggtccgccctcgtctcaggttacacccgacacggccagcccgaggccgcgctcgcgctctaccggcggatgcaggaggagccggggaacgatggcgcggacaacgagttcaccgcgtccagcgcgctcgcggcggccgcggccgcacggtgcggccgcgcgggcagggagctgcactgccacgtcgtgaggagagggatcgacgccgccggcggcgacgccgtcctgtggagcgcgctcgcggacatgtacgccaagtgcggccgcgtggacgacgcgaggagggtcttcgaccggatgccggtccgggacgccgtctcctggacggcgatggtggagaggtacttcgacggcggccgcggcggggaagggttcaggctgttcctccacatgctgaggacccgaggtgttcgaccaaacgagttcacctacgcgggggttctgcgcgcctgcgcacagttcgccgtcgagagcttcgggaggcaggtgcacggccggatggcgaagagcggcactggagactcctgcttcgcggagagcgcgctcctccgcatgtactccaagtgcggcgacatggggagcgcggtgcgcgtgtttgaggccatggcgaagccggacttggtgtcgtggacggcggtgatctccggctatgcgcagaacgggcagccggaggaggcgctgcgctacttcgacatgttcttgaggtctggaattaagcctgatcatgtcacttttgttggtgttctgtcagcgtgtgctcatgccggcctggtcgacaagggcctcgagatcttccattcgattaaggaacagtattgcattgagcacactgctgatcattacgcttgcgtgatcgatctcctaagccggtcaggccaatttgagcgagcagaaaagatgataggtaatatggcagtgaaacctaacaagttcctatgggcgtccttgcttggtggctgccggattcacaagaatgttggcttggcaaggcgggcagcagaagcattgttcgaaatagaacccgagaatccagcaacttatgtaactctggcaaatatttatgcctcggttggtctttttgatgaggttgaggatgtcagaagaatcatggaatcaaagggtataaccaaaatgccggcctcaagttggattgaagttgggagaagagttcatgtgttcctagttggtgataaatcgcatcctaaagctgatgaaatctatgcacttctgaagaagctgtatgtgaaaatggtggaagaagggtatgtggcggacattgaatttgttctccatgatgtcgaagatgagcagaaggagcaggacattggctaccacagcgagcggcttgctgttgcatttgggatcattgccactccggagggttccccgatcaaggttttcaagaacctgcgcatttgcggggactgccatgctgctattaagctcatatcgcagattgtgcagagagatatcattgttagggactcgaataggttccatcacttcaaggacgggatatgttcttgcagagattactggtga
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| Protein seq | MASRSRAVSSGFTKAPTFSVTTASQLHDAIDRLLPRLRGDPSLAPAARALAAAATASLPPSTVLSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW |
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| Function | Pentatricopeptide repeat-containing protein At4g37170 [UniProtKB/Swiss-Prot:O23169] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0009930 | OsCMeo_03g0009930.01 | Chr03 | 7199356 | 7201601 | + | NAM | ||
| CDS seq | atggcgtcgcgctcgcgcgccgtctcctccggcttcacgaaggcgccgaccttctccgtcaccaccgcgtcgcagctccacgacgccatcgaccgcctcctcccgcggctacgcggcgacccgtccctcgcccccgccgcgcgcgcgctcgccgcggcagccaccgcctcgctgccgcccTccaccgtcctctccaaccgcctcctccacctgctctcctcccacccagccaccctccccgacgcgctcgcgctcttctcctccatcgcggccccggacatctgctcccacaacaccctcatctccgcgctctctcgctccccgcgccacctcccctccgcgcgggagctgttcgaccgaatgccccagagggatcacttcgcctggtccgccctcgtctcaggttacacccgacacggccagcccgaggccgcgctcgcgctctaccggcggatgcaggaggagccggggaacgatggcgcggacaacgagttcaccgcgtccagcgcgctcgcggcggccgcggccgcacggtgcggccgcgcgggcagggagctgcactgccacgtcgtgaggagagggatcgacgccgccggcggcgacgccgtcctgtggagcgcgctcgcggacatgtacgccaagtgcggccgcgtggacgacgcgaggagggtcttcgaccggatgccggtccgggacgccgtctcctggacggcgatggtggagaggtacttcgacggcggccgcggcggggaagggttcaggctgttcctccacatgctgaggacccgaggtgttcgaccaaacgagttcacctacgcgggggttctgcgcgcctgcgcacagttcgccgtcgagagcttcgggaggcaggtgcacggccggatggcgaagagcggcactggagactcctgcttcgcggagagcgcgctcctccgcatgtactccaagtgcggcgacatggggagcgcggtgcgcgtgtttgaggccatggcgaagccggacttggtgtcgtggacggcggtgatctccggctatgcgcagaacgggcagccggaggaggcgctgcgctacttcgacatgttcttgaggtctggaattaagcctgatcatgtcacttttgttggtgttctgtcagcgtgtgctcatgccggcctggtcgacaagggcctcgagatcttccattcgattaaggaacagtattgcattgagcacactgctgatcattacgcttgcgtgatcgatctcctaagccggtcaggccaatttgagcgagcagaaaagatgataggtaatatggcagtgaaacctaacaagttcctatgggcgtccttgcttggtggctgccggattcacaagaatgttggcttggcaaggcgggcagcagaagcattgttcgaaatagaacccgagaatccagcaacttatgtaactctggcaaatatttatgcctcggttggtctttttgatgaggttgaggatgtcagaagaatcatggaatcaaagggtataaccaaaatgccggcctcaagttggattgaagttgggagaagagttcatgtgttcctagttggtgataaatcgcatcctaaagctgatgaaatctatgcacttctgaagaagctgtatgtgaaaatggtggaagaagggtatgtggcggacattgaatttgttctccatgatgtcgaagatgagcagaaggagcaggacattggctaccacagcgagcggcttgctgttgcatttgggatcattgccactccggagggttccccgatcaaggttttcaagaacctgcgcatttgcggggactgccatgctgctattaagctcatatcgcagattgtgcagagagatatcattgttagggactcgaataggttccatcacttcaaggacgggatatgttcttgcagagattactggtga
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| Protein seq | MASRSRAVSSGFTKAPTFSVTTASQLHDAIDRLLPRLRGDPSLAPAARALAAAATASLPPSTVLSNRLLHLLSSHPATLPDALALFSSIAAPDICSHNTLISALSRSPRHLPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRMQEEPGNDGADNEFTASSALAAAAAARCGRAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQFAVESFGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQYCIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFEIEPENPATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWIEVGRRVHVFLVGDKSHPKADEIYALLKKLYVKMVEEGYVADIEFVLHDVEDEQKEQDIGYHSERLAVAFGIIATPEGSPIKVFKNLRICGDCHAAIKLISQIVQRDIIVRDSNRFHHFKDGICSCRDYW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.164345 | 0.544678 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0235200 | RBH | 0.108750 | 0.673586 | 0.531596 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13230 | RBH | 0.073379 | 0.456993 | 0.136539 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0235200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0010010 | RBH | 0.0 | 0.0 | 0.575029 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009870 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0000760 | RBH | 1.054639 | 0.396896 | 2.314021 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009840 | RBH | 0.049216 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009730 | RBH | 0.169906 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0117700 | RBH | 0.3199285 | 0.7759875 | 0.121274 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009650 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0117700 | RBH | 0.243772 | 0.513886 | 1.673602 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0009740 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009850 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009740 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009810 | RBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009760 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009760 | RBH | 0.063296 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009660 | RBH | 0.0 | 0.0 | 0.911811 |
