Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0008790 | OGI:03016690 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:6290264-6295079 | ||||||||
| Gene Symbol | MST4, OsMST4 | ||||||||||
| DNA seq | atacagtattgaactgtaccctcaccgtcaccgactatatgcataaaaccgtcgaatttcagagctccagaattaaaatttggcaaaaaaaggtgcagatatatggcattctgttctgcaagttacactgaggcgccaactcgtgtcaggcttgctcggagaaacataaaaggatacaactcatacaacaaactacaaactcaagaagcactccgaattgaaatactcgccattgcttgcagtacgtacagagccgaaattgctacactacccttaagtttgcatgccgtcgctagctgcttatcgatcaatctcacatggccacgcatgagctgatacatagcatcggtgtagtttctcaaccgtgatttgatcagtgagacagtgacatatatatagaacagttcagcgactaaattaaacggtggcgccgttgctcttcccgccattggggacgacgtggtgtttgtcggcgtcgtccatgaagcgcttccagaaccagtgctgcttccacaccctctcggtcatctcctcgatggggatgttcttggtctcgggcaggaagaagagcacgaagagcgacatgacgacgacccacgcggagaagaaggcgaagatggcgtacttgaggtggcagagcatggagaggaacgcctgcgcgatgacgaaggtgaagagcaggttgacgcacacggtgacgctctgccccgccgaccgcgtctccagcgggaacgtctcgctggggatgagccacccgagcgggccccacgaccacgcgaaggaggacacgaacgtgcacaccatcaccaccaccatgatcgcccacccgtggccgaggttgtccgaccggtccgtcaccttgatccccagcacgacggcgatggccacctgcgacaggaacatctgcacgccggcctccagcagcagcatccgcctccccaccctgtccaccgagtagacggacaccagcgtggacagcacgttcacggcccccgtgatcaccgcggagtagagcgacgcgtcggtcttgaacccgagcgtgttgaacagcacgggcgcgtagaacatgatggcgttgatgcccgtgaactgctggaatatctgcagcagcacggcgatcaccagctgcggccggttccggcgctggagcaggttgcggaacgggtgcttcacctcctgcgccacgcggctcgcctccacgatctcgttgaactccggctccacgttgtccgtcccccggatcttcctcagcaccgccttcccttcctccagcctcccgcgctcgatcaggctgttgggcgtgtccaccacgaacagcgcgcccagcgtcagcagcgccgccgggatgccggccagcgacagcgacagccgccatccccacgggtggatcctgcatgcgtacgtaaaatgatgcagctcatgtcagttcatcatcatacgtacaatgcattgcatttgtatctgaatgtgtgtgtatgatgatgtgtgacgtacttggcggtgccgtagttgacgaggttggcgaagaggatgccgatggtgacgttgagctggaagaggatgttgagcccgccgcggatcctcgtcggcgcgatctccgacaggaacaatggaacggcctgcacgtattcacctctgttattaaattcagatgggcttgacgaggcccattaggcccaaagtgacacttgattcgcctttgtttagcgtgcagatacctagctcatcattcaatagtaataataaacttacaaaggcaccaactctgccaataaattccccgtgcgtatttctgagtataataacaacccaagctaggttaggcgttgaacctaatacctaatcacatggcaatacggcatgacccttgaattatgtagatagttttgttattcagagaagatagtttttgttatcttaaccataatcaagggggctgatcggtagaggtggaattaacaaaccgtagtagttgtacatatggtagtattagactactactacgagtacgatagtgtctgctgactgctgctaccactctaatgtttgttgaacctaggcctccatcaaagtcttgttaggtggtgactgaataactgatcacatgaactctgtcctgtactaaacctcttgcatatttagtttattgtcttggcagcttcataattgagtctagacgtcccatatgttggcgagtgtgcgtaatatgtaaactactgtttcatctattagacacgaataaattcagaagaagccaagcaaattaagtactactcctactctcctaccaatcaagcacactagcagccaactagtactttgcagcccaaaactcagtgaaccaaaccaaaggtctacatattgcgacccgtgtggcatatgcgtggacagccatagcagcctctgcttaaaaatcaaaccagagcaagccaaagctgcaacagcatgtgtgtattccaagctgcatccattgaggacttgacagttgtggctgtaactagctagaagttgctgtaaagatcagtcaacaaagctgaccaatctccaacaaacgtgacaaacacaagtctgttgctacactacacaggtcgattcctccgttgataacaactgcgacggccagatagcaggcagccacacgcaaaactaccggctgtaaaatcatgcacacctatcgcctcttggttggctgcaacttcttcagacgtctcgactacaaacttggacaacaaaaaatgggtaatttagccaggttcagtaaggattaattaagaagcgtggctaatcctaaactaggagagtcacgaggacatcggaatcttggaacttaaaaagtttatcacacgcatgctgctgccaatggaagatgtcaacgtagacgaacacaagtcatgcacgatcaagactctctcggcaccggccgaggtgtccataaatccatgtatatatatgcccatacttctacgcgtttgaccccaaaattacggcaattacgaagggccccgtgtttaagtacagtactaactaccccagtatccgacgccataagaaatacgtataaaaatataatttttagtaatgtatatgctcgactcgagtataaaaattctaatcaggacggtggttcatataggagtattaggcaggcaggaacgcacgtcgttttcatggaagcagaaaattcggcttgcttgtgatgcaaattctcaaaccagccaccgctttatatgtttgacttaaactctgtgctaagacttttggactcaagtgagtagtatcagtttatattagtactagtcaataatatatggaatcaaagaagatgatgttgcgaagaaagtacaggacgaaaaaaggaacatggaaatatccgtgcaaattatgagtgaaaacaatagtataaggcgtaatgactttgtttaactccatagcttattatatgaaatgatataatgctgtaagcctgtaacgataagattattggaaagttgcttgcctggttggcaaagccgacgccacagccgagcaggatcctgccgactatgagcatggcgaggttctgggcggcgccgttgaagatgacgccgacgatgaagaagacgccggcgatgagcatggtgaggcggcggccgagccggcgagtggtgtaggaggcgaagaaggtggccgtgaggccggcgaggtacagcgacgaggtgaacagctgcaggccctggttgtcatacttgcagtagttgctctccttgtcctcgtgcttcttcttcagcaccgtcgggaagaactcgcgcaggaagtcatccatcgatgtcactccgcctaaccaagaaaaagaaattcacaagattttcaacggatattatttagtttcataagtcgtaaagttcgtcatctattgtggcaaaaatggcatgtataagtatgaacttggaatgttttaaaatgttgtgttagtgcgccatggaaaaggttgaatcagagagtggataagattttttttccgttttaattggaatttattgtcttagatgtaaaaagggaacatggccacacaaaattaggaaagaaagctgagagagttgcaagaaacgtgatccgtggataaacaaatgcattgacttaccagcctgtcaaagcaggtggctagctcataacactcgattccttctctaaaataacatctaaaaattttaatgctttgggatcctcaagaaaatcatactactagctggactgtaggagcactacaagccggaaactaatgaaaaaggataaaattgcaccaaatggactcaataaaatggcaagatcttttttgatcctctgtaaatggtaggtatttaatgacaaggataaaatcatccgtttcgctttaatctttgcgcttatatgtgcttatccatagcaagataacacaaatatgtagacagatcaaaccgataacacacacgtgcaagaggaatctcactcaatttcaagcaggagacaccaatatgaataatcgagatgaaccaactaatcaacagaaggacatcaaagccggccatggccatgttcggacatcgccggcggccggccgtgcgtagatatatacctgagataccgacgtcgtagccgaacatgaggccgccggtggccgccatgatgcaggagatgatgacgatcggcgtgatcttcgcctcgaactccaccccggaccccgacacagagaaccctcccgccatcttgccccctctctctctctctcgtcgtctctctcctctccggcgatctccactagctagctaccaagagcaagcaggagatggagacgatgaac
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| CDS seq | atggcgggagggttctctgtgtcggggtccggggtggagttcgaggcgaagatcacgccgatcgtcatcatctcctgcatcatggcggccaccggcggcctcatgttcggctacgacgtcggtatctcaggcggagtgacatcgatggatgacttcctgcgcgagttcttcccgacggtgctgaagaagaagcacgaggacaaggagagcaactactgcaagtatgacaaccagggcctgcagctgttcacctcgtcgctgtacctcgccggcctcacggccaccttcttcgcctcctacaccactcgccggctcggccgccgcctcaccatgctcatcgccggcgtcttcttcatcgtcggcgtcatcttcaacggcgccgcccagaacctcgccatgctcatagtcggcaggatcctgctcggctgtggcgtcggctttgccaaccaggccgttccattgttcctgtcggagatcgcgccgacgaggatccgcggcgggctcaacatcctcttccagctcaacgtcaccatcggcatcctcttcgccaacctcgtcaactacggcaccgccaagatccacccgtggggatggcggctgtcgctgtcgctggccggcatcccggcggcgctgctgacgctgggcgcgctgttcgtggtggacacgcccaacagcctgatcgagcgcgggaggctggaggaagggaaggcggtgctgaggaagatccgggggacggacaacgtggagccggagttcaacgagatcgtggaggcgagccgcgtggcgcaggaggtgaagcacccgttccgcaacctgctccagcgccggaaccggccgcagctggtgatcgccgtgctgctgcagatattccagcagttcacgggcatcaacgccatcatgttctacgcgcccgtgctgttcaacacgctcgggttcaagaccgacgcgtcgctctactccgcggtgatcacgggggccgtgaacgtgctgtccacgctggtgtccgtctactcggtggacagggtggggaggcggatgctgctgctggaggccggcgtgcagatgttcctgtcgcaggtggccatcgccgtcgtgctggggatcaaggtgacggaccggtcggacaacctcggccacgggtgggcgatcatggtggtggtgatggtgtgcacgttcgtgtcctccttcgcgtggtcgtggggcccgctcgggtggctcatccccagcgagacgttcccgctggagacgcggtcggcggggcagagcgtcaccgtgtgcgtcaacctgctcttcaccttcgtcatcgcgcaggcgttcctctccatgctctgccacctcaagtacgccatcttcgccttcttctccgcgtgggtcgtcgtcatgtcgctcttcgtgctcttcttcctgcccgagaccaagaacatccccatcgaggagatgaccgagagggtgtggaagcagcactggttctggaagcgcttcatggacgacgccgacaaacaccacgtcgtccccaatggcgggaagagcaacggcgccaccgtttaa
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| Protein seq | MAGGFSVSGSGVEFEAKITPIVIISCIMAATGGLMFGYDVGISGGVTSMDDFLREFFPTVLKKKHEDKESNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGVFFIVGVIFNGAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIHPWGWRLSLSLAGIPAALLTLGALFVVDTPNSLIERGRLEEGKAVLRKIRGTDNVEPEFNEIVEASRVAQEVKHPFRNLLQRRNRPQLVIAVLLQIFQQFTGINAIMFYAPVLFNTLGFKTDASLYSAVITGAVNVLSTLVSVYSVDRVGRRMLLLEAGVQMFLSQVAIAVVLGIKVTDRSDNLGHGWAIMVVVMVCTFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHLKYAIFAFFSAWVVVMSLFVLFFLPETKNIPIEEMTERVWKQHWFWKRFMDDADKHHVVPNGGKSNGATV |
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| Function | Sugar transport protein MST4 [UniProtKB/Swiss-Prot:Q10PW9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0008790 | OsCMeo_03g0008790.01 | Chr03 | 6290264 | 6295079 | - | NAM | ||
| CDS seq | atggcgggagggttctctgtgtcggggtccggggtggagttcgaggcgaagatcacgccgatcgtcatcatctcctgcatcatggcggccaccggcggcctcatgttcggctacgacgtcggtatctcaggcggagtgacatcgatggatgacttcctgcgcgagttcttcccgacggtgctgaagaagaagcacgaggacaaggagagcaactactgcaagtatgacaaccagggcctgcagctgttcacctcgtcgctgtacctcgccggcctcacggccaccttcttcgcctcctacaccactcgccggctcggccgccgcctcaccatgctcatcgccggcgtcttcttcatcgtcggcgtcatcttcaacggcgccgcccagaacctcgccatgctcatagtcggcaggatcctgctcggctgtggcgtcggctttgccaaccaggccgttccattgttcctgtcggagatcgcgccgacgaggatccgcggcgggctcaacatcctcttccagctcaacgtcaccatcggcatcctcttcgccaacctcgtcaactacggcaccgccaagatccacccgtggggatggcggctgtcgctgtcgctggccggcatcccggcggcgctgctgacgctgggcgcgctgttcgtggtggacacgcccaacagcctgatcgagcgcgggaggctggaggaagggaaggcggtgctgaggaagatccgggggacggacaacgtggagccggagttcaacgagatcgtggaggcgagccgcgtggcgcaggaggtgaagcacccgttccgcaacctgctccagcgccggaaccggccgcagctggtgatcgccgtgctgctgcagatattccagcagttcacgggcatcaacgccatcatgttctacgcgcccgtgctgttcaacacgctcgggttcaagaccgacgcgtcgctctactccgcggtgatcacgggggccgtgaacgtgctgtccacgctggtgtccgtctactcggtggacagggtggggaggcggatgctgctgctggaggccggcgtgcagatgttcctgtcgcaggtggccatcgccgtcgtgctggggatcaaggtgacggaccggtcggacaacctcggccacgggtgggcgatcatggtggtggtgatggtgtgcacgttcgtgtcctccttcgcgtggtcgtggggcccgctcgggtggctcatccccagcgagacgttcccgctggagacgcggtcggcggggcagagcgtcaccgtgtgcgtcaacctgctcttcaccttcgtcatcgcgcaggcgttcctctccatgctctgccacctcaagtacgccatcttcgccttcttctccgcgtgggtcgtcgtcatgtcgctcttcgtgctcttcttcctgcccgagaccaagaacatccccatcgaggagatgaccgagagggtgtggaagcagcactggttctggaagcgcttcatggacgacgccgacaaacaccacgtcgtccccaatggcgggaagagcaacggcgccaccgtttaa
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| Protein seq | MAGGFSVSGSGVEFEAKITPIVIISCIMAATGGLMFGYDVGISGGVTSMDDFLREFFPTVLKKKHEDKESNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGVFFIVGVIFNGAAQNLAMLIVGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTAKIHPWGWRLSLSLAGIPAALLTLGALFVVDTPNSLIERGRLEEGKAVLRKIRGTDNVEPEFNEIVEASRVAQEVKHPFRNLLQRRNRPQLVIAVLLQIFQQFTGINAIMFYAPVLFNTLGFKTDASLYSAVITGAVNVLSTLVSVYSVDRVGRRMLLLEAGVQMFLSQVAIAVVLGIKVTDRSDNLGHGWAIMVVVMVCTFVSSFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHLKYAIFAFFSAWVVVMSLFVLFFLPETKNIPIEEMTERVWKQHWFWKRFMDDADKHHVVPNGGKSNGATV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.360816 | 1.082263 | 4.818971 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0218400 | RBH | 16.690903 | 15.065633 | 7.268617 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11900 | RBH | 8.941695 | 8.113528 | 1.555858 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0218400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008750 | RBH | 0.092221 | 3.184630 | 2.515332 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008730 | RBH | 0.187086 | 2.081253 | 1.628232 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008740 | RBH | 0.000000 | 0.114537 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008620 | RBH | 11.109125 | 6.699487 | 11.936093 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0104200 | RBH | 2.5251405 | 2.4716015 | 0.2714375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008540 | RBH | 0.140906 | 0.425152 | 0.672764 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0104500 | RBH | 24.170162 | 5.333507 | 0.068485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0008600 | RBH | 0.752513 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008660 | RBH | 1.731085 | 13.156801 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008640 | RBH | 0.000000 | 2.912917 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008640 | RBH | 0.434355 | 0.597470 | 1.562311 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008610 | RBH | 0.0 | 2.650208 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008630 | RBH | 0.0 | 0.852084 | 2.191959 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008500 | RBH | 0.000000 | 3.837915 | 7.540519 |
