Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_03g0006270 | OGI:03011790 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr03:4468660-4471013 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggaatatctgagatgatcatttccaatctaatgttacatttatgtacagaaagatacagtttgatgatgaagggagaagagcgaaggcttcagaaactgtaggatgatattcatgtatgatgctgtatgtgagttgaaagattgatgtgatatttagcatcatccttttgatccattttgtgttattagtatttgttgtacatgctgcattagatggcattagtgtaggataattgttaggtcaaagaagcagttcataatctaaccaatctaaacgccaaaagttgtaccatgttccatcaaaacttaattaggacagaaacatgcagtagccagacacataaacagcagatactccaaatctgtcagctaataaactcccgagtgtcgaattggcagtaattgtggacacaccaattacaaacaacataagagtggcaaattgttccttctcccaacatagatatgggctacatgatagatgctctgcaaactagcagagtaacagattaagtgcctaatggtaatactaacagatgaggcctaaacctacccaaaatgcaatttttcgtctgccgatgtgttagtagtgccgtctttgttgatgtcacttggttacctcatttccatcatcaacagtagctcggataatatgcacctggacaaaaatcaattttcaaggattattcacattattcatatataaaacatgcttaagttacaggtacaaatttattcagacatattgttcagttcagtaaaaattaataccttgaaggttgtaggcttgaccaactgaaatactgtcgcatctccatccaacaatccatggtccaaagcaaagccagcccagccaccacttaggccattcttgtaggcaaggtaattggtatcaaattgctcgtctttctcatccaacaaagtgacaatggcatcatgttttggcaggtaagtctcgcagaaatgcctcggtaagcccttttgatcatgccaccaaacaagtattagtaccacatgacaacagttccccttaaagaagggttgcagggatgggaatgtgatagtgcagtactcaccaaccaaaatcctcggaccacatgtgaatgtagcattggcttcacgaaggagggaaattcagggtcaagttgtgattccagttcctctgcttttcttgctgcctcgagcctagcttccatggaaattgatccacgggttgccaggtagatactgtcaattgcttttcgtggagacctgcagaagaaatcggacaacgggatgtagttttgcaccttttgctacttagtgggaggcaatacaggcttcatacgctcatgtggtaatgttattgttatcacataatgacataccttttcatcctctctgcgccatctggtgctacctgccgacaaatgctacttcttagtacagaaaagatgtttcttatgatggttacatacttacatatgtggatgctaggaacaatggcacaatttaaaatgccatttactgaaaattgttaagttctgctaagaatggtttgtttcagagacttatttaatgctcagtagttcctaccaaatttgcacatttttttatcaattcagttggtcagaaaacgtgaaatacagcttcttcactgtgcaataggccgtttttacagcttgcactagctggattgacagccacggctagaacgtatgaaaatcacgctcaataatttgtaaccttaaacttagaaccagatgcatcagaacaagaagcaggtgtatctgaacttcttttttttttctatgactgaatattactgaatctttttttctccttgacatttattactgtgtaaatggaacaccaaagcaaagcagttacctctgcatacttgacctcagggagattagcgaggcgccgagacctcctcggaggcgagggagccacgaccgccgcctcgatgatcctacgcctcttctgcttctgctccgccgaaaaaagaaataaaaccaaaaaaagaaagatcaaattaatgaacggatcgagcagcgagcgagcaagagcaaccgattagaatgtagagcgcggtggcagcatgagttggtcaccatgggggagggggtcttgggggcgacggcgatggcggcggagaggtggcgcaggttgagcgcctccatcttgcgcttgttctcctccaccgtcctctccctcgccgcctcgtacgccgtcatccccttctccatccccatccccatctcccccccttcctcctcctcctcctcctcctcctctccctactcgatttgctgcggctttgcgaggctggagaagaagggtttaagcgagggagagagagagagaagagg
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| CDS seq | atggggatggggatggagaaggggatgacggcgtacgaggcggcgagggagaggacggtggaggagaacaagcgcaagatggaggcgctcaacctgcgccacctctccgccgccatcgccgtcgcccccaagaccccctcccccatgaagcagaagaggcgtaggatcatcgaggcggcggtcgtggctccctcgcctccgaggaggtctcggcgcctcgctaatctccctgaggtcaagtatgcagaggtagcaccagatggcgcagagaggatgaaaaggtctccacgaaaagcaattgacagtatctacctggcaacccgtggatcaatttccatggaagctaggctcgaggcagcaagaaaagcagaggaactggaatcacaacttgaccctgaatttccctccttcgtgaagccaatgctacattcacatgtggtccgaggattttggttgggcttaccgaggcatttctgcgagacttacctgccaaaacatgatgccattgtcactttgttggatgagaaagacgagcaatttgataccaattaccttgcctacaagaatggcctaagtggtggctgggctggctttgctttggaccatggattgttggatggagatgcgacagtatttcagttggtcaagcctacaaccttcaaggtgcatattatccgagctactgttgatgatggaaatgaggtaaccaagtga
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| Protein seq | MGMGMEKGMTAYEAARERTVEENKRKMEALNLRHLSAAIAVAPKTPSPMKQKRRRIIEAAVVAPSPPRRSRRLANLPEVKYAEVAPDGAERMKRSPRKAIDSIYLATRGSISMEARLEAARKAEELESQLDPEFPSFVKPMLHSHVVRGFWLGLPRHFCETYLPKHDAIVTLLDEKDEQFDTNYLAYKNGLSGGWAGFALDHGLLDGDATVFQLVKPTTFKVHIIRATVDDGNEVTK |
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| Function | B3 domain-containing protein Os03g0184500 [UniProtKB/Swiss-Prot:Q10QS9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_03g0006270 | OsCMeo_03g0006270.01 | Chr03 | 4468660 | 4471013 | - | NAM | ||
| CDS seq | atggggatggggatggagaaggggatgacggcgtacgaggcggcgagggagaggacggtggaggagaacaagcgcaagatggaggcgctcaacctgcgccacctctccgccgccatcgccgtcgcccccaagaccccctcccccatgaagcagaagaggcgtaggatcatcgaggcggcggtcgtggctccctcgcctccgaggaggtctcggcgcctcgctaatctccctgaggtcaagtatgcagaggtagcaccagatggcgcagagaggatgaaaaggtctccacgaaaagcaattgacagtatctacctggcaacccgtggatcaatttccatggaagctaggctcgaggcagcaagaaaagcagaggaactggaatcacaacttgaccctgaatttccctccttcgtgaagccaatgctacattcacatgtggtccgaggattttggttgggcttaccgaggcatttctgcgagacttacctgccaaaacatgatgccattgtcactttgttggatgagaaagacgagcaatttgataccaattaccttgcctacaagaatggcctaagtggtggctgggctggctttgctttggaccatggattgttggatggagatgcgacagtatttcagttggtcaagcctacaaccttcaaggtgcatattatccgagctactgttgatgatggaaatgaggtaaccaagtga
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| Protein seq | MGMGMEKGMTAYEAARERTVEENKRKMEALNLRHLSAAIAVAPKTPSPMKQKRRRIIEAAVVAPSPPRRSRRLANLPEVKYAEVAPDGAERMKRSPRKAIDSIYLATRGSISMEARLEAARKAEELESQLDPEFPSFVKPMLHSHVVRGFWLGLPRHFCETYLPKHDAIVTLLDEKDEQFDTNYLAYKNGLSGGWAGFALDHGLLDGDATVFQLVKPTTFKVHIIRATVDDGNEVTK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 4.665503 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0184500 | RBH | 0.0 | 0.000000 | 1.523675 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08620 | RBH | 0.0 | 0.000000 | 0.321185 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0184500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006290 | RBH | 0.0 | 3.593048 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006260 | RBH | 0.0 | 0.744562 | 0.267906 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006260 | RBH | 0.0 | 0.123071 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006210 | RBH | 0.0 | 3.622126 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0072500 | RBH | 3.925329 | 1.7920425 | 9.603658 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006140 | RBH | 0.0 | 0.336498 | 0.088529 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0072800 | RBH | 4.766065 | 0.129702 | 36.300825 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0006170 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006220 | RBH | 0.0 | 8.450454 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006180 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006200 | RBH | 0.000000 | 0.583192 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006190 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006220 | RBH | 0.0 | 1.243084 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0006040 | RBH | 0.000000 | 5.519585 | 0.547075 |
