Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0039540 | OGI:02099980 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:36192911-36197267 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaaccacacacactaatccggtccaccggaatcgaaaccaaactgttgatcatcgtgcacaagcacaacttgccaaccgccacttcacgcgatcgatcactctcactcctctcgctgccgctgccgcacctagccaaattatgccttcgccttcgcacctcgccggcgcgctggacgcggcgcgccccttcctgcgcggcgaggaggagcaggtggacccggcgctccccaagctggccgccgtgctgcgcgccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacgtccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcgaccacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcgtcccgcgccaccagctcatccacgacgacctgctcttccactacgccgaccaggacctcgtcgccgacctcgccgcctccgaggcgtcactgcaggacgcgcggcgcgggctgttccaccacgacggcgaggcctggcggctcaagatccagcgcctcctcccgccccacggaatcactgtcaaacacatcaggtgagttagttaattagttacaataaataaatcttcttaatttctactgctcagcaccagatggggttacgagaattaatttttctccgaccctagatgatgagttcattatgggaaccgttcgattcagaacgtgtggtgaagaatcaatcggacagagtccatcacagcatatatcttggttcagaaaatctattccacgacatcccgtggagacgggatagtaatccggatcgatcccctcctcctacctcactcttctcccccaaatcgtcggagccagcggccactgtcgtccccgtcgctgtcgccccaccgctcgtcggagccggtggccgccgtcgtccccgtcgccgtcgccccaccgctcgtcggagccggcggccaccgccgcgggggaggcggcgacgacgaggagcttggcgacgggtgaggtgaacaagagggagagcgggagcgggggcgcggaggccgctgccggcgccggggaagccgctgctggctcaggaccccggccgccgaggaggacgacgacggcgcggcctcggcaagggtcgccctcaagctcgcctcccttgccgcgccgctctggctccccgctctcgtcggtcttctcatcggctgccccgcctcgccgaccaccggattcgccgctgcctcctccacgcttcgcctcgccgaccaccggattcgcgcgccacctccttctcctgctccaccacgcggctacctcctcctctctctcctcctccaggccaccaggtactagatatcacgggtacccggtaccagatactaggtactagcctggtaccaggtaccaaaggtatcagtcggtaccaaaggtacctggtaccgactgataccaaggtaccaggtatcaggatggagaggaggtagaggttccagagcatgttgccgccggcgttgcagtgaccgagacaccgagatcgccagattcttctgcttctgtagcggcggaggaggagccacctacgctcaccggcaaggaggcggcgggagcagcgggcaaggacgacggcgaccttggcaaggagcgcgagggaggaggggagaggccccggcgccggcagcgacgagagcgccagtggaagaagcagtgccacagcgcgcggaggcggcgccgcagcgggcggaggacgacgtcgtggaggtgcggcgagatcaccctcgatgccgccccgacctcgccgacgccgtgccgtcgtcatccacggccgccggagacgacgacgaccccttcctcctggccaacttcatctccgcctctcgttttcttctcctgtgtgagagagtttgtggagggaaagggaaggagacaaggtagtggagatcttatcccgtggctgctacgttgcaacggaatctcgtacggtagctgccctcttccaaaaataagcattttctacgtaatttagtaaggatttggtcaaaatttgaatttaaattgcctagatgcatttccgaagattcggattggttgaaaatgtgtggattttcgtgtattaaaattggtgtacacatacatagcaagacggttaccatggcatcaaccgaaaaccgtgtgaatttcatcttcgacgtttagaatttagaatttagaagtttttaaatctcacgacaacagctcgagtgaaaatcataggcatgtcggatgtcatcatcttctacgctgttgcttggagagcatccgctgtaaacaattttcatacagtgatactagtgccagatccggttcctgagtatcagacccgttatctatatatatctgacctggtactcgtatgtgccatacctagtatcgggtatcaggtatgataatttgatacctgagtatcacgtatgatacatacatgtatcttatatggtacatggtacttgcgagccatatataaatcaggcatcgtgggagcccaacgtgcactagtcaatctcagtaccagacataatagtgtatcatcaaagattatcaagacaaaaaaaatctttttatttttcacaagcctcgctccatggctcgggaggcatattgccctgccaagacatctggccatgcctgcccaaactcaattaatatatcacaactcaaagtgcccaactaagcagctctctcgagacctagtcgttgagacccatgcatgtagaccggtcaagctggggcacttgcactagtgggaacacggaatagcgcatgtttgatgtggagcggcatgtgcgactttggtttcagacatggtagttgggagcgacgaagcgctagatgcggagcaggtgacgtcagcacttatcccgttgaaacggaatcccgttgtctagccgttctcatcttggttaccaggaaaaaaacacttaacaattcatgacaaaattaatcttctcatacatgttttatacgatcagaggatttggcagaaagatgtcttgacaattttacagactgttgtttattatacctgacaatacaaaagaacataagctcatgttggcagctagtgccaataaaatttggggagatatccagtaaacatgggagtatctagtttgtttactgctgcgataataacgtaacttacaatttagatcatatcatccacaagtaactgtaatctacagtgcatgagtacaatgcaaaggcaaaccaaccccatgcatagatagcaaacaaacttagttgcatttcgaagttggttctacatacttcgatcagattgcacctgatttttgtctgtactttgaattggaaggactggcgaggatgtggcactgtcgaggcgcatcgcggcaaccttccttctcatgacaatggcggacttcagcgaccagctcttcgactggcaggatcgcctcttcgacaacaccaatggccgcctcgagttcagtggcaatacctggacttcgctctggccaggcaccggcaagcccggcctctggactgcctccatatcccgcatgggcgcgctctacagcctcatcgttcgcgaggaagagatacacatagctcaacgaaagcatagcaacaatggccaagaagacgatcgtgacgaggacattgagctggtgatcccaccggtgttcaatggctgcacccaggtgctcaccgccgacgaccagaaggcggcacgggacctctactgggatgcagtttgcagcggcggcgaggacgagacggattggcgcaaggtggaggagatcctgcgacggtgcattggcaggaacccgtttgtaggagagcctcacctggttcttgctcaggtgcttctgaacatggagatgtatgaggaggcagaggagcagatagaggcaggggtgaagctgttgctggagtgggggagcagctgggacaagaggatgccatgggaggcttgggtgtcatggggcagggcgatgctgatcaaggccaaggacaaggattggccgcacacctccttcggcatcctcagcatagggcttgtcaagtgagtgaacccattcacctccactctctgatggtaaattaagctgcacctgtactgtacatgtcataacatcacctgataattgctgtatcctctccatcggtatatatatgcttagctcgatggaggaaatcaaacatgatggatatgaaataaatcgctccacaaatatcaaaataatttgacgcatccatag
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| CDS seq | atgccttcgccttcgcacctcgccggcgcgctggacgcggcgcgccccttcctgcgcggcgaggaggagcaggtggacccggcgctccccaagctggccgccgtgctgcgcgccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacgtccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcgaccacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcgtcccgcgccaccagctcatccacgacgacctgctcttccactacgccgaccaggacctcgtcgccgacctcgccgcctccgaggcgtcactgcaggacgcgcggcgcgggctgttccaccacgacggcgaggcctggcggctcaagatccagcgcctcctcccgccccacggaatcactgtcaaacacatcaggactggcgaggatgtggcactgtcgaggcgcatcgcggcaaccttccttctcatgacaatggcggacttcagcgaccagctcttcgactggcaggatcgcctcttcgacaacaccaatggccgcctcgagttcagtggcaatacctggacttcgctctggccaggcaccggcaagcccggcctctggactgcctccatatcccgcatgggcgcgctctacagcctcatcgttcgcgaggaagagatacacatagctcaacgaaagcatagcaacaatggccaagaagacgatcgtgacgaggacattgagctggtgatcccaccggtgttcaatggctgcacccaggtgctcaccgccgacgaccagaaggcggcacgggacctctactgggatgcagtttgcagcggcggcgaggacgagacggattggcgcaaggtggaggagatcctgcgacggtgcattggcaggaacccgtttgtaggagagcctcacctggttcttgctcaggtgcttctgaacatggagatgtatgaggaggcagaggagcagatagaggcaggggtgaagctgttgctggagtgggggagcagctgggacaagaggatgccatgggaggcttgggtgtcatggggcagggcgatgctgatcaaggccaaggacaaggattggccgcacacctccttcggcatcctcagcatagggcttgtcaagtga
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| Protein seq | MPSPSHLAGALDAARPFLRGEEEQVDPALPKLAAVLRAAGAGECWHKHGTFLAHLLDVHRILRLWGAPDAVARCGLYHSAYSNSYVNLAIFEPDVGRDHVRPIVGAAAERLVHLFCVVPRHQLIHDDLLFHYADQDLVADLAASEASLQDARRGLFHHDGEAWRLKIQRLLPPHGITVKHIRTGEDVALSRRIAATFLLMTMADFSDQLFDWQDRLFDNTNGRLEFSGNTWTSLWPGTGKPGLWTASISRMGALYSLIVREEEIHIAQRKHSNNGQEDDRDEDIELVIPPVFNGCTQVLTADDQKAARDLYWDAVCSGGEDETDWRKVEEILRRCIGRNPFVGEPHLVLAQVLLNMEMYEEAEEQIEAGVKLLLEWGSSWDKRMPWEAWVSWGRAMLIKAKDKDWPHTSFGILSIGLVK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0039540 | OsCMeo_02g0039540.01 | Chr02 | 36192911 | 36197236 | + | NAM | ||
| CDS seq | atgccttcgccttcgcacctcgccggcgcgctggacgcggcgcgccccttcctgcgcggcgaggaggagcaggtggacccggcgctccccaagctggccgccgtgctgcgcgccgccggcgccggcgagtgctggcacaagcacggcaccttcctcgcccacctcctcgacgtccaccgcatcctccgcctctggggcgcccccgacgccgtcgcgcgctgcggcctctaccactccgcctactccaactcctacgtcaacctcgccatcttcgaacccgacgtcggccgcgaccacgtgcgccccatcgtcggcgccgccgccgagcgcctcgtccacctcttctgcgtcgtcccgcgccaccagctcatccacgacgacctgctcttccactacgccgaccaggacctcgtcgccgacctcgccgcctccgaggcgtcactgcaggacgcgcggcgcgggctgttccaccacgacggcgaggcctggcggctcaagatccagcgcctcctcccgccccacggaatcactgtcaaacacatcaggactggcgaggatgtggcactgtcgaggcgcatcgcggcaaccttccttctcatgacaatggcggacttcagcgaccagctcttcgactggcaggatcgcctcttcgacaacaccaatggccgcctcgagttcagtggcaatacctggacttcgctctggccaggcaccggcaagcccggcctctggactgcctccatatcccgcatgggcgcgctctacagcctcatcgttcgcgaggaagagatacacatagctcaacgaaagcatagcaacaatggccaagaagacgatcgtgacgaggacattgagctggtgatcccaccggtgttcaatggctgcacccaggtgctcaccgccgacgaccagaaggcggcacgggacctctactgggatgcagtttgcagcggcggcgaggacgagacggattggcgcaaggtggaggagatcctgcgacggtgcattggcaggaacccgtttgtaggagagcctcacctggttcttgctcaggtgcttctgaacatggagatgtatgaggaggcagaggagcagatagaggcaggggtgaagctgttgctggagtgggggagcagctgggacaagaggatgccatgggaggcttgggtgtcatggggcagggcgatgctgatcaaggccaaggacaaggattggccgcacacctccttcggcatcctcagcatagggcttgtcaagtga
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| Protein seq | MPSPSHLAGALDAARPFLRGEEEQVDPALPKLAAVLRAAGAGECWHKHGTFLAHLLDVHRILRLWGAPDAVARCGLYHSAYSNSYVNLAIFEPDVGRDHVRPIVGAAAERLVHLFCVVPRHQLIHDDLLFHYADQDLVADLAASEASLQDARRGLFHHDGEAWRLKIQRLLPPHGITVKHIRTGEDVALSRRIAATFLLMTMADFSDQLFDWQDRLFDNTNGRLEFSGNTWTSLWPGTGKPGLWTASISRMGALYSLIVREEEIHIAQRKHSNNGQEDDRDEDIELVIPPVFNGCTQVLTADDQKAARDLYWDAVCSGGEDETDWRKVEEILRRCIGRNPFVGEPHLVLAQVLLNMEMYEEAEEQIEAGVKLLLEWGSSWDKRMPWEAWVSWGRAMLIKAKDKDWPHTSFGILSIGLVK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0039540 | OsCMeo_02g0039540.02 | Chr02 | 36193798 | 36197267 | + | IsoSeq | ||
| CDS seq | atcccgtggagacgggatagtaatccggatcgatcccctcctcctacctcactcttctcccccaaatcgtcggagccagcggccactgtcgtccccgtcgctgtcgccccaccgctcgtcggagccggtggccgccgtcgtccccgtcgccgtcgccccaccgctcgtcggagccggcggccaccgccgcgggggaggcggcgacgacgaggagcttggcgacgggtg
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| Protein seq | IPWRRDSNPDRSPPPTSLFSPKSSEPAATVVPVAVAPPLVGAGGRRRPRRRRPTARRSRRPPPRGRRRRRGAWRRV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr02 | 36192911 | 36196361 | + | OsCMeo_02g0039540.01 | OsCMeo_02g0039540.01,OsCMeo_02g0039540.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.122593 | 0.0 | 15.538806 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0828200 | RBH | 12.394218 | 16.019152 | 5.209737 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g58150 | RBH | 8.357228 | 10.710953 | 1.333830 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0828200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0039610 | RBH | 4.212276 | 1.695173 | 4.562494 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0039640 | RBH | 2.739960 | 0.000000 | 3.606986 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0039560 | RBH | 0.584519 | 0.0 | 6.943793 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0039180 | RBH | 1.437614 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039100 | RBH | 41.153503 | 0.0 | 3.763265 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0580600 | RBH | 16.621682 | 1.02437 | 7.347716 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0038790 | RBH | 1.690610 | 0.0 | 1.253792 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0611800 | RBH | 14.3358995 | 4.6865 | 0.29582 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0039060 | RBH | 1.791413 | 0.111547 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0038990 | RBH | 3.184089 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0039130 | RBH | 37.447124 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0039140 | RBH | 3.132350 | 0.0 | 1.899221 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0038800 | RBH | 1.935949 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G039590 | RBH | 2.106606 | 0.0 | 2.126097 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0039360 | RBH | 5.593020 | 0.000000 | 8.702172 |
