Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0038490 | OGI:02098420 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:35589923-35594002 | ||||||||
| Gene Symbol | FLO13, OsNDUFA9, NDUFA9 | ||||||||||
| DNA seq | agtcaccaccacttggccttcctcgtctccggccttcctccaccgcgagctccgaccaccaccgacggcgacgatgcaggcggcggcggcgtggaggcgtcacctcctcgacggcaacatctcccccaccaccgcggcggcgatctccgccttcagatccgcctcccagccggcgctcgcaccccaaggtatggaggaggcgcccttccgggcgtccgggaccagccctgaacatcgcccgcgggtgccccccgagggtagatcttagaggtggtttgggttttcgatgcaggattgggtggagcggatggcgcgaggtacatgtccgcgagggcgccggcggtcaaggggacggggcatctcgtccgcaagggaaccggagggaggtcgtctgtgaggtgaggagctcaggctggttccgttcctccgattgattctatcgggcattcccgttgtcacgagtctgcgtctaggtttggccttcccaatgatttggtttaggttcattaggttgtgataatgttctgatccatccgtactgtcatagcagatatgtgttccttagaatggtcttcctgatgcttagatcgtcagatttgtgcagttcgtatggttgcatttgcgatggacctgttcttgtatacttgtgcatctcgtggaatttggagttacctgtaacacagctaggccttggaaattctgtgccctgaaaaaacagagagtcgattttagttattatgagctgaattggagctctggttgacagatatgtgatgttgttctaccaaatgtatttgatcctacttcccacatttttttgctaggtttgagaaaattcatttgccatttgcatagggtgttgagtgtacgaattgtggtactaatatttatcttaaagagtgttacttgcacatttgctggtgtttgttgcatcttgggagcaatgacgatcaaattaggttaatgatactcttaacctgcaaattttcctttgaatttataacaagaaatttcgtgacagtggaatcatagctacggtgtttggagctactggatttcttggccgctaccttgtccaacaacttggtgagatgataaggctttagacctatagtactacgttgtaatgaataatatcttactgagttatattaccataaaaacaaagtgaaatagtatggtaactcaattatttatttctattcagcaaagatggggtctcaagtgcttgtaccattcagaggttctgaggattgtcaccgacacctgaagttgatgggtgacctgggtcaggtactgtatttttgtagttcacaaattacaagtagtgaagtcattaactcatttttcctttttttttcccttttatgtattctacttttttctcttggcagattgttcctatgaaatacaatccaagagatgtggattcaattaaggctgtcatggccaaatccaatgtggtcattaacctaataggtatgtctaacttggtacagcatcgtattcagagtcaaatcccttcctgactatgtcaactcaatttcaacaggacgcgagtatgaaacaagaaactatggatttgacgaagtaaatcatcatatggctgaacaacttgcaatggtatgcattgtgcgcacatccgcttttcttccaactatatagataattcctaatacaatctttgagaattaggattgaatgaaattcaaagtagcaaccagcttgatttctcagtgcactggcttgcttgtgctcatcccaagattgcagcagcattgacaagcaaccatttggctggtttatttcaccagctataacttcagagggtcacataatccatggttgtgattagatttcaaacttttgcctgcttaggtgaccttggctaggtttcatctgacacaatacaaagcacaatatatttaagcacactgctctgccatcggtatataatccgtctagctgtccttttggttaacattaatccttctttttcttgtttcagaagccagtgttacttagctcctagatctggaaatggaaatatcttacttttacattttgcatgaaaagtatctttttctactgagctgttagtcttttaattcagcatcacagttactgccttcaatgtggaattactattctctttcctctaatttgtgctgtcctgggtaataaccatgctctataatttcattcaattggatacctgtacaaaggggaaaaaaattcactatcatttgtaactttctttttgctgcatcatgacaatataattcccatcaagacttcttttgtggctggctattaactgtgttatggactatgcacagatttcaaaggagcatgggggtatcatgagatttatccaggtttcttccctaggagcatcggcctcttctccttctagaatgctgagggccaaggctgctggggaggaatctgtgttgaaagaatttcctgaggtgatcatctacattaggcaatactgaactcctgtttctacattaccgaaagttagaagcaaacatgtcccatttatgttggcagttactttaaccaaaattttgtttgcatggatcaacaggctacaattatgaggcctgcaactatgattggcacagaagatcggattttgaatagatgggcacagtttgccaaaaattggggtttcctccctcttgttgattctgggtctacaaagtaattgaactttcctgttggctgctgttgtaatgccttgacttaaaatttagtctagaacattaattgatcagagaatacgggcctcatcatttgccctatggcttataagccattgccaaaatttgaattttaaaacttgattttgaagttgattttgatgctaattcaacgtagtttctttttcatcattagcttttaagtcgctaaagacacatgtaaaagtattactcataaattactttttatcagtaataagccgttacggcttataatcagtcgtaggcaaccgatggggacctacataaacttccacagcaggtgagataacatgaatgcaaccttttggtttttgcaggattcagcctgtttatgttgtggatgttgctgctgctattgtcaactccctcaaggatgacggcaccagcatgggaaagacctacgaacttggtggaccagagatttatactgttcatgagctggtaattatcatgcacaacattttgttatgcagcaatgaacgaatcttcaagttggttggtcgagtttttttatataaaaatgttctggatgttacaggctgagctgatgtatgagacaatacgtgaatggccacggtacatcgatgttcctcttcctattgcaagggtatgaacttaaataatatcttgtgttggtcaaggcaacctgagtattggattgtctcgtcttttaacagttatgcttcgggttgtgcaggctatcgcatctccaagggaaatgctgctaaacaaagtgccctttccgttgccaaccccatcaattttcaacaaagatcagattaatgcattttctgtagacaccctagtgtctgataatggtaagcatgatatcttatgattgatctgtaacctattgtttgcacaagctcacatttgtttctggggacataatacagctctcaccttttcggacctcggaatcgtgcctcacaaattgaagggttacccggttgagtttcttgtgtgctaccggaagggcggtccagcttttggttctactgtcagtgagaagatacgaagttctgagctgtagtcttccactcctgaagacactgtagaattaatcttttagttgcagaaacgttgttgtgtttgttttcttactatctgctgctgctgctgccagccgcccaacagcgagcaggaccatattcgatgcatatgttggttcctgctcatgtttttcaccaataagacgcacaaaatctttgtcaattttttgagttgcaaatgcaagtgaggcgaatcgttgcagtcctacgacacaataacaaagatatgtttctttctttaccctatacatatatgctcgctggtttgcattgcttgc
More
|
||||||||||
| CDS seq | atgcaggcggcggcggcgtggaggcgtcacctcctcgacggcaacatctcccccaccaccgcggcggcgatctccgccttcagatccgcctcccagccggcgctcgcaccccaaggattgggtggagcggatggcgcgaggtacatgtccgcgagggcgccggcggtcaaggggacggggcatctcgtccgcaagggaaccggagggaggtcgtctgtgagtggaatcatagctacggtgtttggagctactggatttcttggccgctaccttgtccaacaacttgcaaagatggggtctcaagtgcttgtaccattcagaggttctgaggattgtcaccgacacctgaagttgatgggtgacctgggtcagattgttcctatgaaatacaatccaagagatgtggattcaattaaggctgtcatggccaaatccaatgtggtcattaacctaataggacgcgagtatgaaacaagaaactatggatttgacgaagtaaatcatcatatggctgaacaacttgcaatgatttcaaaggagcatgggggtatcatgagatttatccaggtttcttccctaggagcatcggcctcttctccttctagaatgctgagggccaaggctgctggggaggaatctgatgacggcaccagcatgggaaagacctacgaacttggtggaccagagatttatactgttcatgagctggctgagctgatgtatgagacaatacgtgaatggccacggtacatcgatgttcctcttcctattgcaagggctatcgcatctccaagggaaatgctgctaaacaaagtgccctttccgttgccaaccccatcaattttcaacaaagatcagattaatgcattttctgtagacaccctagtgtctgataatgctctcaccttttcggacctcggaatcgtgcctcacaaattgaagggttacccggttgagtttcttgtgtgctaccggaagggcggtccagcttttggttctactgtcagtgagaagatacgaagttctgagctgtag
More
|
||||||||||
| Protein seq | MQAAAAWRRHLLDGNISPTTAAAISAFRSASQPALAPQGLGGADGARYMSARAPAVKGTGHLVRKGTGGRSSVSGIIATVFGATGFLGRYLVQQLAKMGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYETRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGASASSPSRMLRAKAAGEESDDGTSMGKTYELGGPEIYTVHELAELMYETIREWPRYIDVPLPIARAIASPREMLLNKVPFPLPTPSIFNKDQINAFSVDTLVSDNALTFSDLGIVPHKLKGYPVEFLVCYRKGGPAFGSTVSEKIRSSEL |
||||||||||
| Function | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial [UniProtKB/Swiss-Prot:Q9SK66] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0038490 | OsCMeo_02g0038490.02 | Chr02 | 35590504 | 35593967 | + | NAM | ||
| CDS seq | atggggtctcaagtgcttgtaccattcagaggttctgaggattgtcaccgacacctgaagttgatgggtgacctgggtcagattgttcctatgaaatacaatccaagagatgtggattcaattaaggctgtcatggccaaatccaatgtggtcattaacctaataggacgcgagtatgaaacaagaaactatggatttgacgaagtaaatcatcatatggctgaacaacttgcaatgatttcaaaggagcatgggggtatcatgagatttatccaggtttcttccctaggagcatcggcctcttctccttctagaatgctgagggccaaggctgctggggaggaatctgatgacggcaccagcatgggaaagacctacgaacttggtggaccagagatttatactgttcatgagctggctgagctgatgtatgagacaatacgtgaatggccacggtacatcgatgttcctcttcctattgcaagggctatcgcatctccaagggaaatgctgctaaacaaagtgccctttccgttgccaaccccatcaattttcaacaaagatcagattaatgcattttctgtagacaccctagtgtctgataatgctctcaccttttcggacctcggaatcgtgcctcacaaattgaagggttacccggttgagtttcttgtgtgctaccggaagggcggtccagcttttggttctactgtcagtgagaagatacgaagttctgagctgtag
More
|
|||||||
| Protein seq | MGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYETRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGASASSPSRMLRAKAAGEESDDGTSMGKTYELGGPEIYTVHELAELMYETIREWPRYIDVPLPIARAIASPREMLLNKVPFPLPTPSIFNKDQINAFSVDTLVSDNALTFSDLGIVPHKLKGYPVEFLVCYRKGGPAFGSTVSEKIRSSEL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0038490 | OsCMeo_02g0038490.01 | Chr02 | 35589923 | 35593967 | + | NAM | ||
| CDS seq | atgcaggcggcggcggcgtggaggcgtcacctcctcgacggcaacatctcccccaccaccgcggcggcgatctccgccttcagatccgcctcccagccggcgctcgcaccccaaggattgggtggagcggatggcgcgaggtacatgtccgcgagggcgccggcggtcaaggggacggggcatctcgtccgcaagggaaccggagggaggtcgtctgtgagtggaatcatagctacggtgtttggagctactggatttcttggccgctaccttgtccaacaacttgcaaagatggggtctcaagtgcttgtaccattcagaggttctgaggattgtcaccgacacctgaagttgatgggtgacctgggtcagattgttcctatgaaatacaatccaagagatgtggattcaattaaggctgtcatggccaaatccaatgtggtcattaacctaataggacgcgagtatgaaacaagaaactatggatttgacgaagtaaatcatcatatggctgaacaacttgcaatgatttcaaaggagcatgggggtatcatgagatttatccaggtttcttccctaggagcatcggcctcttctccttctagaatgctgagggccaaggctgctggggaggaatctgatgacggcaccagcatgggaaagacctacgaacttggtggaccagagatttatactgttcatgagctggctgagctgatgtatgagacaatacgtgaatggccacggtacatcgatgttcctcttcctattgcaagggctatcgcatctccaagggaaatgctgctaaacaaagtgccctttccgttgccaaccccatcaattttcaacaaagatcagattaatgcattttctgtagacaccctagtgtctgataatgctctcaccttttcggacctcggaatcgtgcctcacaaattgaagggttacccggttgagtttcttgtgtgctaccggaagggcggtccagcttttggttctactgtcagtgagaagatacgaagttctgagctgtag
More
|
|||||||
| Protein seq | MQAAAAWRRHLLDGNISPTTAAAISAFRSASQPALAPQGLGGADGARYMSARAPAVKGTGHLVRKGTGGRSSVSGIIATVFGATGFLGRYLVQQLAKMGSQVLVPFRGSEDCHRHLKLMGDLGQIVPMKYNPRDVDSIKAVMAKSNVVINLIGREYETRNYGFDEVNHHMAEQLAMISKEHGGIMRFIQVSSLGASASSPSRMLRAKAAGEESDDGTSMGKTYELGGPEIYTVHELAELMYETIREWPRYIDVPLPIARAIASPREMLLNKVPFPLPTPSIFNKDQINAFSVDTLVSDNALTFSDLGIVPHKLKGYPVEFLVCYRKGGPAFGSTVSEKIRSSEL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0038490 | OsCMeo_02g0038490.03 | Chr02 | 35589927 | 35594002 | + | IsoSeq | ||
| CDS seq | caccacttggccttcctcgtctccggccttcctccaccgcgagctccgaccaccaccgacggcgacgatgcaggcggcggcggcgtggaggcgtcacctcctcgacggcaacatctcccccaccaccgcggcggcgatctccgccttcagatccgcctcccagccggcgctcgcaccccaaggattgggtggagcggatggcgcgaggtacatgtccgcgagggcgccggcggtcaaggggacggggcatctcgtccgcaagggaaccggagggaggtcgtctgtgagtggaatcatagctacggtgtttggagctactggatttcttggccgctaccttgtccaacaacttgcaaagatggggtctcaagtgcttgtaccattcagagg
More
|
|||||||
| Protein seq | HHLAFLVSGLPPPRAPTTTDGDDAGGGGVEASPPRRQHLPHHRGGDLRLQIRLPAGARTPRIGWSGWREVHVREGAGGQGDGASRPQGNRREVVCEWNHSYGVWSYWISWPLPCPTTCKDGVSSACTIQR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.965936 | 88.785080 | 31.247866 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0816800 | RBH | 3.589825 | 3.382233 | 24.747660 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g57180 | RBH | 2.476518 | 2.253561 | 6.384504 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0816800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0038610 | RBH | 1.302826 | 69.020149 | 25.397621 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0038640 | RBH | 0.632843 | 20.487713 | 10.159363 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0038120 | RBH | 0.343764 | 3.508938 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0038210 | RBH | 17.106209 | 118.777611 | 49.050552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0571100 | RBH | 20.328803 | 21.4990055 | 29.901437 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0037880 | RBH | 0.961288 | 7.490361 | 5.485113 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0602100 | RBH | 20.391514 | 12.061426 | 38.684349 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0038170 | RBH | 0.744276 | 0.695278 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0038110 | RBH | 1.625154 | 57.043602 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0038210 | RBH | 19.256073 | 58.340904 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0038230 | RBH | 1.510295 | 6.970894 | 6.571242 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0037880 | RBH | 0.457593 | 31.508825 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G038540 | RBH | 0.586189 | 35.427933 | 11.133949 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0038400 | RBH | 5.728823 | 102.092926 | 45.714180 |
