Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0032370 | OGI:02086220 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:31016369-31017963 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttaaatttcaggaagggcaagtgtttcaggttcacttccagctgataccaaattaactttcaaatcttccaacatctgatagatatcttcgctttctgtgtgtaacttgtctgcactgacaaaggaatgtacacgaccatctaactcgatccagctaagcccaggctgcttcattaccccatactcctccatcttcctcctcgttctcttcaagtcttcccattgtccagctcgtgcatatgtgttggataacaagacataggagctgccatgtcttggctctgcgtgtgccagctttcgagcagcaacctctgccatctcgacattgccatggctctgacaggcagctagaagtgagctccagatcacaagacccggatcttccggtagactgctggcgagttcgaaggcttcttccaagaacccggcacggccgagaagatctatcaagcaaccatagtgctgcatcgtcgacttgatgcccatgctcctcattaggttgaagtacttgaagccttcgttgactaggcccccatggctacaagcattcaggacggccaagaaggtgactccgttaggctcaatgcccaattgcctcatctcggtgaacaatctcagcgccatctctgggtgaccatgtgctgcgaaaccaccaatcacagaggtccactgctccacattcttgctggcgacacttgagaagcaccggaaggcgtcgcccatgcttccgcaccttgtgtacatgttgatcagagcaacaccaagagcaccatccagtgagaactcccgccgaattacgtacccgtgagcgcaccttccaattccaagcacacccatatcgcgaacagctgatacaaagccgaccatcgtggcctcgtccggtgccaaaccataaaccaccgtcatctcggcaaacaaatccactgcctcctgaacccaaccatgcctcacaaaaccagcaatgacagtgttccaggaaaccacgttccgctccggcatttccacaaacacctcccaggcagcatccaagtcgctggctcgcacaatcccatcaagaagcacgttccacgacaccaccgtcttcaccggcattccatcgaacatcttccgcgcatcgcccaggcggccaagccgcgcgtagacacgcacaagggaggtggacgcgtagacgccggagacggacggcgggtcgccggacttgacgaggagggcgtggatctgctcggcctcggccgccgcggagggcagcagccgcgcgcaggccgcgagcgcgggcaccagcgcggggtttgcgtggagggcgcggccgtcgaggtggtgccggcggaaggcgcggagagcggcgtcccccgagaacgcagcgcggcatcggagggcggcgccattcgaggcccgtttggagaagggagatttcggcgggagaccggaagtggcgggggagaggagcgagcaacccgaggagctcatggaagagattatctctcatgctccgctagtattgcgaaggtgaaaaaaaatacagtgcggatccagcaggtcggattcgtcagccgatttttgcaaagataattcaagcatgaccatagcagagcagt
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| CDS seq | atgagctcctcgggttgctcgctcctctcccccgccacttccggtctcccgccgaaatctcccttctccaaacgggcctcgaatggcgccgccctccgatgccgcgctgcgttctcgggggacgccgctctccgcgccttccgccggcaccacctcgacggccgcgccctccacgcaaaccccgcgctggtgcccgcgctcgcggcctgcgcgcggctgctgccctccgcggcggccgaggccgagcagatccacgccctcctcgtcaagtccggcgacccgccgtccgtctccggcgtctacgcgtccacctcccttgtgcgtgtctacgcgcggcttggccgcctgggcgatgcgcggaagatgttcgatggaatgccggtgaagacggtggtgtcgtggaacgtgcttcttgatgggattgtgcgagccagcgacttggatgctgcctgggaggtgtttgtggaaatgccggagcggaacgtggtttcctggaacactgtcattgctggttttgtgaggcatggttgggttcaggaggcagtggatttgtttgccgagatgacggtggtttatggtttggcaccggacgaggccacgatggtcggctttgtatcagctgttcgcgatatgggtgtgcttggaattggaaggtgcgctcacgggtacgtaattcggcgggagttctcactggatggtgctcttggtgttgctctgatcaacatgtacacaaggtgcggaagcatgggcgacgccttccggtgcttctcaagtgtcgccagcaagaatgtggagcagtggacctctgtgattggtggtttcgcagcacatggtcacccagagatggcgctgagattgttcaccgagatgaggcaattgggcattgagcctaacggagtcaccttcttggccgtcctgaatgcttgtagccatgggggcctagtcaacgaaggcttcaagtacttcaacctaatgaggagcatgggcatcaagtcgacgatgcagcactatggttgcttgatagatcttctcggccgtgccgggttcttggaagaagccttcgaactcgccagcagtctaccggaagatccgggtcttgtgatctggagctcacttctagctgcctgtcagagccatggcaatgtcgagatggcagaggttgctgctcgaaagctggcacacgcagagccaagacatggcagctcctatgtcttgttatccaacacatatgcacgagctggacaatgggaagacttgaagagaacgaggaggaagatggaggagtatggggtaatgaagcagcctgggcttagctggatcgagttagatggtcgtgtacattcctttgtcagtgcagacaagttacacacagaaagcgaagatatctatcagatgttggaagatttgaaagttaatttggtatcagctggaagtgaacctgaaacacttgcccttcctgaaatttaa
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| Protein seq | MSSSGCSLLSPATSGLPPKSPFSKRASNGAALRCRAAFSGDAALRAFRRHHLDGRALHANPALVPALAACARLLPSAAAEAEQIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELDGRVHSFVSADKLHTESEDIYQMLEDLKVNLVSAGSEPETLALPEI |
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| Function | Pentatricopeptide repeat-containing protein At5g66520 [UniProtKB/Swiss-Prot:Q9FJY7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0032370 | OsCMeo_02g0032370.01 | Chr02 | 31016369 | 31017963 | - | NAM | ||
| CDS seq | atgagctcctcgggttgctcgctcctctcccccgccacttccggtctcccgccgaaatctcccttctccaaacgggcctcgaatggcgccgccctccgatgccgcgctgcgttctcgggggacgccgctctccgcgccttccgccggcaccacctcgacggccgcgccctccacgcaaaccccgcgctggtgcccgcgctcgcggcctgcgcgcggctgctgccctccgcggcggccgaggccgagcagatccacgccctcctcgtcaagtccggcgacccgccgtccgtctccggcgtctacgcgtccacctcccttgtgcgtgtctacgcgcggcttggccgcctgggcgatgcgcggaagatgttcgatggaatgccggtgaagacggtggtgtcgtggaacgtgcttcttgatgggattgtgcgagccagcgacttggatgctgcctgggaggtgtttgtggaaatgccggagcggaacgtggtttcctggaacactgtcattgctggttttgtgaggcatggttgggttcaggaggcagtggatttgtttgccgagatgacggtggtttatggtttggcaccggacgaggccacgatggtcggctttgtatcagctgttcgcgatatgggtgtgcttggaattggaaggtgcgctcacgggtacgtaattcggcgggagttctcactggatggtgctcttggtgttgctctgatcaacatgtacacaaggtgcggaagcatgggcgacgccttccggtgcttctcaagtgtcgccagcaagaatgtggagcagtggacctctgtgattggtggtttcgcagcacatggtcacccagagatggcgctgagattgttcaccgagatgaggcaattgggcattgagcctaacggagtcaccttcttggccgtcctgaatgcttgtagccatgggggcctagtcaacgaaggcttcaagtacttcaacctaatgaggagcatgggcatcaagtcgacgatgcagcactatggttgcttgatagatcttctcggccgtgccgggttcttggaagaagccttcgaactcgccagcagtctaccggaagatccgggtcttgtgatctggagctcacttctagctgcctgtcagagccatggcaatgtcgagatggcagaggttgctgctcgaaagctggcacacgcagagccaagacatggcagctcctatgtcttgttatccaacacatatgcacgagctggacaatgggaagacttgaagagaacgaggaggaagatggaggagtatggggtaatgaagcagcctgggcttagctggatcgagttagatggtcgtgtacattcctttgtcagtgcagacaagttacacacagaaagcgaagatatctatcagatgttggaagatttgaaagttaatttggtatcagctggaagtgaacctgaaacacttgcccttcctgaaatttaa
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| Protein seq | MSSSGCSLLSPATSGLPPKSPFSKRASNGAALRCRAAFSGDAALRAFRRHHLDGRALHANPALVPALAACARLLPSAAAEAEQIHALLVKSGDPPSVSGVYASTSLVRVYARLGRLGDARKMFDGMPVKTVVSWNVLLDGIVRASDLDAAWEVFVEMPERNVVSWNTVIAGFVRHGWVQEAVDLFAEMTVVYGLAPDEATMVGFVSAVRDMGVLGIGRCAHGYVIRREFSLDGALGVALINMYTRCGSMGDAFRCFSSVASKNVEQWTSVIGGFAAHGHPEMALRLFTEMRQLGIEPNGVTFLAVLNACSHGGLVNEGFKYFNLMRSMGIKSTMQHYGCLIDLLGRAGFLEEAFELASSLPEDPGLVIWSSLLAACQSHGNVEMAEVAARKLAHAEPRHGSSYVLLSNTYARAGQWEDLKRTRRKMEEYGVMKQPGLSWIELDGRVHSFVSADKLHTESEDIYQMLEDLKVNLVSAGSEPETLALPEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.263167 | 0.000000 | 0.415109 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0730900 | RBH | 0.738334 | 0.496008 | 0.789830 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g49830 | RBH | 0.277974 | 0.343613 | 0.209416 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0730900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0032390 | RBH | 0.000000 | 0.0 | 0.198811 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0032500 | RBH | 0.000000 | 0.674237 | 0.400051 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031970 | RBH | 0.048612 | 0.029824 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0032080 | RBH | 0.656324 | 2.150616 | 2.126816 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0498100 | RBH | 1.7315135 | 1.211899 | 0.6073765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031850 | RBH | 0.065955 | 0.170161 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0528100 | RBH | 1.607655 | 1.016009 | 2.725384 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0032170 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031910 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0032270 | RBH | 0.000000 | 7.917543 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0032120 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031740 | RBH | 0.000000 | 2.573610 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G032420 | RBH | 0.157125 | 0.000000 | 0.349772 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0032170 | RBH | 0.000000 | 0.0 | 0.492110 |
