Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0029260 | OGI:02015330 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:28648315-28650660 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgataattgttcttgtatacactggaggtgaaattgtatatggagcgactggtgcagagtatagcattccacccaagattacttttcctgcttccgaagctacaactttcgaagatgtaaagaatgagatttatggagggctaaaatattctgaaactgaatattcacttgttatacaaggccgatatgatgtaggagcaccaagtccacattttttccagttgatcccattatataagaccagatcatggcaaatgatttttgacatgacattagcactgaacagttggcgtatggtggaattatatgttgagttcactccaacaaatagtggattcagccaaaaccacattgttagtgaaataacaagagaaaacctagaaccaactatggctacagttgctgagaatattgtgtcagcatcacatcagtcgcctaagcatggtatatctcctaaaattcatgatgtgagtaattctgcaccaattgtgggcttgtcttctgataatatcataaatgaagcgcaagaaaattctcaagatgatggctatgtggacgaagagacagaacgtgagggtgatatgattgaggaagatgagagcgatggcgaagccgaagaggatgtgaatgataacacctatggtcagcctgtggtcaaattgatcaaatcgttgccactcgtgggcaggtctgacaagcaccctgtaagtgccttccatgatatatctgtgctacagaatacaacggccgatgagagattctttggttcgaggaaacattttaacagtccattagctaaaggccgaacttttgattccaaggagcatttgcagtttgctattaatgaatttcacattagtaccaatcaagaagtaaaggttaccacaagtaacaagtcaagactaagtatgaagtgcatagacaatacttgcttgtggaagctatatgggaaaccaacaaaaattggttcaagttggaagatacaaacttgcccctatcctcacacatgtcgagctcccgctgatcgacttgatcgtgcacaattgacatctgcagttattgcagatgttatacgtgatgacttaaaagagaacttggagttgagcataatgaacatacggcaattagttcggcaacggtataaaaatgtaaagccacactacaacaagttatggcgtggccgggagttagcaattgctcaactttttggaagttgggaaggatcatatgcattgctcactccattattggaggctattaaagcaactaatcctggaacaagatatcaaattttgtcacaaccgatgactcgtgaagggcatcgagcattcaagtgcgtggcttgggcttttggaccttgtattgaagcagtaccttatcttcgacctgtcattaatatagatgcttcttttttgtctggaaggtaccgaggtaggttgttgatagcatgtggatatgatgctgaaaacaaattattacctcttgcatttgcaatagtggagaaggaagacagtgacaattggggatggttcatgagatggttgcggaaagaggttattggttttggtaaatttgtgtgtgttatttctgatcgccacaaagctatcaaatgggtgttcaagcagccacatattggatggaatgaaagtgctggtgagtgtgtgcatcgattttgttcacaacatattgctgagaatctttacaagcaatgtaaagatgatgatgtggtaaaaacttttaattgggttgtcaagaagaagaaaccacgtagattcaatgaaggtatggaagctatttcaaaaacttgtccagatgcaattgcttatcttggtaaggtgggaaaatatcggcaagaagataagaatgagccggaaaaatctaaaaaggttttccagtgcatggatggtggacatcgatgggggataatgacaagtaatggctccgagtctctaaataatgtgttcaagtactcaaggagattaccagtcatggcaatagtggaggaaacatttaacaagtgcttagaatggtttattgatagaagaagatcttctcttgatcttgcaaactcagggaaaatgtggtctcgacgggttgagaagttattagtgaaacgaggggccaaggccggatccatgcatgttatatcatatggtgatgaaagaggagaatatgaggtgaaggttgaccgtgaacgagttgcattgcatcaaggagatcgtgttgtgtatgttcgaagggatttcaagtataagctagttatgcgcaacaatgctattccgacatgtgagtgccaaaagcccaaccttactagtattccttgtgctcatgtgcttgctgtttga
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| CDS seq | atgataattgttcttgtatacactggaggtgaaattgtatatggagcgactggtgcagagtatagcattccacccaagattacttttcctgcttccgaagctacaactttcgaagatgtaaagaatgagatttatggagggctaaaatattctgaaactgaatattcacttgttatacaaggccgatatgatgtaggagcaccaagtccacattttttccagttgatcccattatataagaccagatcatggcaaatgatttttgacatgacattagcactgaacagttggcgtatggtggaattatatgttgagttcactccaacaaatagtggattcagccaaaaccacattgttagtgaaataacaagagaaaacctagaaccaactatggctacagttgctgagaatattgtgtcagcatcacatcagtcgcctaagcatggtatatctcctaaaattcatgatgtgagtaattctgcaccaattgtgggcttgtcttctgataatatcataaatgaagcgcaagaaaattctcaagatgatggctatgtggacgaagagacagaacgtgagggtgatatgattgaggaagatgagagcgatggcgaagccgaagaggatgtgaatgataacacctatggtcagcctgtggtcaaattgatcaaatcgttgccactcgtgggcaggtctgacaagcaccctaatacaacggccgatgagagattctttggttcgaggaaacattttaacagtccattagctaaaggccgaacttttgattccaaggagcatttgcagtttgctattaatgaatttcacattagtaccaatcaagaagtaaaggttaccacaattattgcagatgttatacgtgatgacttaaaagagaacttggagttgagcataatgaacatacggcaattagttcggcaacggtataaaaataagaagaaaccacgtagattcaatgaaggtatggaagctatttcaaaaacttgtccagatgcaattgcttatcttgggaaaatgtggtctcgacgggttgagaagttattagtgaaacgaggggccaaggccggatccatgcatgttatatcatatggtgatgaaagaggagaatatgaggtgaaggttgaccgtgaacgagttgcattgcatcaaggagatcgtgttgtgtatgttcgaagggatttcaagtataagctagttatgcgcaacaatgctattccgacatgtgagtgccaaaagcccaaccttactagtattccttgtgctcatgtgcttgctgtttga
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| Protein seq | MIIVLVYTGGEIVYGATGAEYSIPPKITFPASEATTFEDVKNEIYGGLKYSETEYSLVIQGRYDVGAPSPHFFQLIPLYKTRSWQMIFDMTLALNSWRMVELYVEFTPTNSGFSQNHIVSEITRENLEPTMATVAENIVSASHQSPKHGISPKIHDVSNSAPIVGLSSDNIINEAQENSQDDGYVDEETEREGDMIEEDESDGEAEEDVNDNTYGQPVVKLIKSLPLVGRSDKHPNTTADERFFGSRKHFNSPLAKGRTFDSKEHLQFAINEFHISTNQEVKVTTIIADVIRDDLKENLELSIMNIRQLVRQRYKNKKKPRRFNEGMEAISKTCPDAIAYLGKMWSRRVEKLLVKRGAKAGSMHVISYGDERGEYEVKVDRERVALHQGDRVVYVRRDFKYKLVMRNNAIPTCECQKPNLTSIPCAHVLAV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0029260 | OsCMeo_02g0029260.01 | Chr02 | 28648315 | 28650660 | + | NAM | ||
| CDS seq | atgataattgttcttgtatacactggaggtgaaattgtatatggagcgactggtgcagagtatagcattccacccaagattacttttcctgcttccgaagctacaactttcgaagatgtaaagaatgagatttatggagggctaaaatattctgaaactgaatattcacttgttatacaaggccgatatgatgtaggagcaccaagtccacattttttccagttgatcccattatataagaccagatcatggcaaatgatttttgacatgacattagcactgaacagttggcgtatggtggaattatatgttgagttcactccaacaaatagtggattcagccaaaaccacattgttagtgaaataacaagagaaaacctagaaccaactatggctacagttgctgagaatattgtgtcagcatcacatcagtcgcctaagcatggtatatctcctaaaattcatgatgtgagtaattctgcaccaattgtgggcttgtcttctgataatatcataaatgaagcgcaagaaaattctcaagatgatggctatgtggacgaagagacagaacgtgagggtgatatgattgaggaagatgagagcgatggcgaagccgaagaggatgtgaatgataacacctatggtcagcctgtggtcaaattgatcaaatcgttgccactcgtgggcaggtctgacaagcaccctaatacaacggccgatgagagattctttggttcgaggaaacattttaacagtccattagctaaaggccgaacttttgattccaaggagcatttgcagtttgctattaatgaatttcacattagtaccaatcaagaagtaaaggttaccacaattattgcagatgttatacgtgatgacttaaaagagaacttggagttgagcataatgaacatacggcaattagttcggcaacggtataaaaataagaagaaaccacgtagattcaatgaaggtatggaagctatttcaaaaacttgtccagatgcaattgcttatcttgggaaaatgtggtctcgacgggttgagaagttattagtgaaacgaggggccaaggccggatccatgcatgttatatcatatggtgatgaaagaggagaatatgaggtgaaggttgaccgtgaacgagttgcattgcatcaaggagatcgtgttgtgtatgttcgaagggatttcaagtataagctagttatgcgcaacaatgctattccgacatgtgagtgccaaaagcccaaccttactagtattccttgtgctcatgtgcttgctgtttga
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| Protein seq | MIIVLVYTGGEIVYGATGAEYSIPPKITFPASEATTFEDVKNEIYGGLKYSETEYSLVIQGRYDVGAPSPHFFQLIPLYKTRSWQMIFDMTLALNSWRMVELYVEFTPTNSGFSQNHIVSEITRENLEPTMATVAENIVSASHQSPKHGISPKIHDVSNSAPIVGLSSDNIINEAQENSQDDGYVDEETEREGDMIEEDESDGEAEEDVNDNTYGQPVVKLIKSLPLVGRSDKHPNTTADERFFGSRKHFNSPLAKGRTFDSKEHLQFAINEFHISTNQEVKVTTIIADVIRDDLKENLELSIMNIRQLVRQRYKNKKKPRRFNEGMEAISKTCPDAIAYLGKMWSRRVEKLLVKRGAKAGSMHVISYGDERGEYEVKVDRERVALHQGDRVVYVRRDFKYKLVMRNNAIPTCECQKPNLTSIPCAHVLAV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0028940 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029010 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0028870 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028470 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028610 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0456200 | RBH | 0.0045105 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028410 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0484000 | SBH | 0.001857 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029160 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028460 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028750 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028620 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028300 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G028880 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028660 | SBH | 0.0 | 0.0 | 0.0 |
