Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0029250 | OGI:02079090 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:28616473-28619372 | ||||||||
| Gene Symbol | OsMyb1R, LHY-like_chr.2, CMYB1 | ||||||||||
| DNA seq | gcatccaacatttcctcgtctttccattgcattttgtggagagatacaagcctagattacatgtagttagcctatggcaacccctgtccgagattcaggttgataaaaggcaacattgacagccactcaactctgaacgtattcgagttggggataaaattacaggcaaagtAaaaaaaaaagtacaaaagttgttatcttacagattatacaatactatatcgacgagtaaaaaccagaattgctcttccattttctggaaaactaaagtggtctcgagcaacatcctaacagcaggacatgcctcttcttcccgccttaatctcatgtcagatttgttatttgtcacctacgaatagtagtactgtggcgtgacgtgtccgtgcgacgagtcagttgtcacaagcacagccttgtcagctcaccgtcggcgacggcctcctctcctccggcggcctccgatcgcagcagctcgctctccgccgcgcacctcttgtacggcatgaagcccctctgcagcagggtgacggacgccgagctctcgcacttggtcagccgtggcgaggccgccgcctccctgctgttcccttggccacgggactccgcgacgtccgaattctgagccgccgccgccgccgccggtaccgccgccgacgatccaagcacgacgctggaggccgtgttcgagcccgtcagcgatccttccctctgcgagactctgaactctacgccctctgaatcacggtggcactgctggttcgcagccgccgccgccgccgggtagaacagcgcgcatggaaggctcccgttgtagctcaaccatggcatgacaggttgcgcggcgaaaccatccgatcgaggaaggaagtagagaaactgttgcatgctgctcggccatggattcgacgagctcccttctggggcagcagcaaaagaaggtactagtatgtttctggttgctctctcaactgaaccactcgttgcaatgttactgccattaagcaggtgcagctggtctgaatccttaaccactacgctctttccgaatagcctgaagactgatgcttctgaggatgcttctttggcatccgtggttgcaattgacatctgaaattcacattcgaaaaacaaaaacagaatttattaagggtgccaataacactaaaagggtatggttatttttccattggcgacaatagatcaaattaataccatgtaaaactgcagatgatcagattgcatatcacaatttgattcagagatactcctacctaaaaggctaaaaaaacctgtgtttctctgaaagtgatgtcagaaattctcgactgaaattattggtcctaaatattgcttttctgatggggaatatcttgtattcttgcaaaattggaagaactaatgccttacaaagttgtccaacatgtgctgcccacgaaagaatataccttagtatttggcgcctgcatagccaactcagcagtcgggatgctcggtgagaggcacccgtcctctctgtccaccgacgacgccggcgagccgccaccgtcgacatgctcatccgtaccggcggctgacggagccagcgacccgctgccgctcgagttattcgagaacccaccgcccagggcctcggtgcctatctgcgccgccgtcagcaccgacgtcggcgagccctcctcctgctcggacagggactgcatccacaacggcggcttctccagctgcctgagcgccgggacgtgcttcttggccgcgccgtccaccttgcgcgggtacgggtgcgccggcttcctcttcggccgcggcggagggatctggatggccgccgccgccgccgcggcggacgcgccgcccgagccggtgttactccccgaagattctctgacgacctgcagagcaccgcgcaatcacagcgtcaggaaactctgtgaaacaacccgcagtaaaaacatgacatcatctgttcttctctcccatgaaaaaaaattgaaaaattggcgacttactttgggcaatcaagtaacacaaccaatggttttttttttttcgtttgtttgttttttcatggcagagatcagagattttttgttgttgtttacatgagaacgaaaggctgtacgaccttagagaagaacttctgcgcgtggctacggatttgcacggcagtcttggtacctatgtgctctgcatccacacacagacgaacacaaacgttacggcacacaggcgaatacggacaattgcgatcgatcgccatgaaaattcgatctgttcgatgagacataccttgtatacggcgccatgcgcggccgtgcagctgcagggcttccaagaacagcctgtgctcctcgtccgtccacttctcgcgctgcttcgtgatcgtgtacggctttcgcgcctggtcgggggcaagcgtgcaaggaaggaacacaatcttttaagagggaatcgagcagccaacgaactcaagcacacaagaaccgcacgggattttgcagcggagaagccgcgattcggggggaggagtaatttacctttggcacgtgctcttcccctgacaaatccatgtcgccgtagttcatatggctcctgagatgatccacggtgctctcgccgccggcgcgatcgtcggcaccgttttcgtcggttgccatggcgtttccctgaatagcacagaacggccacaaaaagaggggaaaaaacagcacacggtcagttcccagtaacatcatttaatccgaaaaacaaagttcattcaaaaacgatctcgccaagaaaagaaacggaaagatcaaactcaatttaccggcaaacaggccatctccattctgaaaaaaccgaactcctcccaaaccaaaccacactccacaggatcgccacaccaaagccaaaaaatcagc
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| CDS seq | atggagatggcctgtttgccgggaaacgccatggcaaccgacgaaaacggtgccgacgatcgcgccggcggcgagagcaccgtggatcatctcaggagccatatgaactacggcgacatggatttgtcaggggaagagcacgtgccaaaggcgcgaaagccgtacacgatcacgaagcagcgcgagaagtggacggacgaggagcacaggctgttcttggaagccctgcagctgcacggccgcgcatggcgccgtatacaagagcacataggtaccaagactgccgtgcaaatccgtagccacgcgcagaagttcttctctaaggtcgtcagagaatcttcggggagtaacaccggctcgggcggcgcgtccgccgcggcggcggcggcggccatccagatccctccgccgcggccgaagaggaagccggcgcacccgtacccgcgcaaggtggacggcgcggccaagaagcacgtcccggcgctcaggcagctggagaagccgccgttgtggatgcagtccctgtccgagcaggaggagggctcgccgacgtcggtgctgacggcggcgcagataggcaccgaggccctgggcggtgggttctcgaataactcgagcggcagcgggtcgctggctccgtcagccgccggtacggatgagcatgtcgacggtggcggctcgccggcgtcgtcggtggacagagaggacgggtgcctctcaccgagcatcccgactgctgagttggctatgcaggcgccaaatactaagatgtcaattgcaaccacggatgccaaagaagcatcctcagaagcatcagtcttcaggctattcggaaagagcgtagtggttaaggattcagaccagctgcacctgcttaatggcagtaacattgcaacgagtggttcagttgagagagcaaccagaaacatactagtaccttcttttgctgctgccccagaagggagctcgtcgaatccatggccgagcagcatgcaacagtttctctacttccttcctcgatcggatggtttcgccgcgcaacctgtcatgccatggttgagctacaacgggagccttccatgcgcgctgttctacccggcggcggcggcggctgcgaaccagcagtgccaccgtgattcagagggcgtagagttcagagtctcgcagagggaaggatcgctgacgggctcgaacacggcctccagcgtcgtgcttggatcgtcggcggcggtaccggcggcggcggcggcggctcagaattcggacgtcgcggagtcccgtggccaagggaacagcagggaggcggcggcctcgccacggctgaccaagtgcgagagctcggcgtccgtcaccctgctgcagaggggcttcatgccgtacaagaggtgcgcggcggagagcgagctgctgcgatcggaggccgccggaggagaggaggccgtcgccgacggtgagctgacaaggctgtgcttgtga
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| Protein seq | MEMACLPGNAMATDENGADDRAGGESTVDHLRSHMNYGDMDLSGEEHVPKARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVVRESSGSNTGSGGASAAAAAAAIQIPPPRPKRKPAHPYPRKVDGAAKKHVPALRQLEKPPLWMQSLSEQEEGSPTSVLTAAQIGTEALGGGFSNNSSGSGSLAPSAAGTDEHVDGGGSPASSVDREDGCLSPSIPTAELAMQAPNTKMSIATTDAKEASSEASVFRLFGKSVVVKDSDQLHLLNGSNIATSGSVERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRSDGFAAQPVMPWLSYNGSLPCALFYPAAAAAANQQCHRDSEGVEFRVSQREGSLTGSNTASSVVLGSSAAVPAAAAAAQNSDVAESRGQGNSREAAASPRLTKCESSASVTLLQRGFMPYKRCAAESELLRSEAAGGEEAVADGELTRLCL |
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| Function | Protein REVEILLE 1 [UniProtKB/Swiss-Prot:F4KGY6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0029250 | OsCMeo_02g0029250.01 | Chr02 | 28616473 | 28619372 | - | NAM | ||
| CDS seq | atggagatggcctgtttgccgggaaacgccatggcaaccgacgaaaacggtgccgacgatcgcgccggcggcgagagcaccgtggatcatctcaggagccatatgaactacggcgacatggatttgtcaggggaagagcacgtgccaaaggcgcgaaagccgtacacgatcacgaagcagcgcgagaagtggacggacgaggagcacaggctgttcttggaagccctgcagctgcacggccgcgcatggcgccgtatacaagagcacataggtaccaagactgccgtgcaaatccgtagccacgcgcagaagttcttctctaaggtcgtcagagaatcttcggggagtaacaccggctcgggcggcgcgtccgccgcggcggcggcggcggccatccagatccctccgccgcggccgaagaggaagccggcgcacccgtacccgcgcaaggtggacggcgcggccaagaagcacgtcccggcgctcaggcagctggagaagccgccgttgtggatgcagtccctgtccgagcaggaggagggctcgccgacgtcggtgctgacggcggcgcagataggcaccgaggccctgggcggtgggttctcgaataactcgagcggcagcgggtcgctggctccgtcagccgccggtacggatgagcatgtcgacggtggcggctcgccggcgtcgtcggtggacagagaggacgggtgcctctcaccgagcatcccgactgctgagttggctatgcaggcgccaaatactaagatgtcaattgcaaccacggatgccaaagaagcatcctcagaagcatcagtcttcaggctattcggaaagagcgtagtggttaaggattcagaccagctgcacctgcttaatggcagtaacattgcaacgagtggttcagttgagagagcaaccagaaacatactagtaccttcttttgctgctgccccagaagggagctcgtcgaatccatggccgagcagcatgcaacagtttctctacttccttcctcgatcggatggtttcgccgcgcaacctgtcatgccatggttgagctacaacgggagccttccatgcgcgctgttctacccggcggcggcggcggctgcgaaccagcagtgccaccgtgattcagagggcgtagagttcagagtctcgcagagggaaggatcgctgacgggctcgaacacggcctccagcgtcgtgcttggatcgtcggcggcggtaccggcggcggcggcggcggctcagaattcggacgtcgcggagtcccgtggccaagggaacagcagggaggcggcggcctcgccacggctgaccaagtgcgagagctcggcgtccgtcaccctgctgcagaggggcttcatgccgtacaagaggtgcgcggcggagagcgagctgctgcgatcggaggccgccggaggagaggaggccgtcgccgacggtgagctgacaaggctgtgcttgtga
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| Protein seq | MEMACLPGNAMATDENGADDRAGGESTVDHLRSHMNYGDMDLSGEEHVPKARKPYTITKQREKWTDEEHRLFLEALQLHGRAWRRIQEHIGTKTAVQIRSHAQKFFSKVVRESSGSNTGSGGASAAAAAAAIQIPPPRPKRKPAHPYPRKVDGAAKKHVPALRQLEKPPLWMQSLSEQEEGSPTSVLTAAQIGTEALGGGFSNNSSGSGSLAPSAAGTDEHVDGGGSPASSVDREDGCLSPSIPTAELAMQAPNTKMSIATTDAKEASSEASVFRLFGKSVVVKDSDQLHLLNGSNIATSGSVERATRNILVPSFAAAPEGSSSNPWPSSMQQFLYFLPRSDGFAAQPVMPWLSYNGSLPCALFYPAAAAAANQQCHRDSEGVEFRVSQREGSLTGSNTASSVVLGSSAAVPAAAAAAQNSDVAESRGQGNSREAAASPRLTKCESSASVTLLQRGFMPYKRCAAESELLRSEAAGGEEAVADGELTRLCL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 6.416190 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0685200 | RBH | 0.117321 | 0.0 | 0.939218 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46030 | RBH | 0.079262 | 0.0 | 0.241541 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0685200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029320 | RBH | 0.0 | 0.0 | 0.650058 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029380 | RBH | 0.0 | 0.0 | 1.985955 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024810 | RBH | 0.000000 | 0.000000 | 0.557719 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028840 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029030 | RBH | 0.0 | 0.0 | 2.941354 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0456000 | RBH | 0.179259 | 0.4569025 | 39.7407035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028840 | RBH | 0.0 | 0.247145 | 0.783544 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0483800 | RBH | 17.431953 | 2.780065 | 0.5877435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0029150 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029050 | RBH | 0.0 | 0.122613 | 0.701990 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029290 | RBH | 0.0 | 0.0 | 0.890359 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029060 | RBH | 0.139219 | 0.0 | 0.826661 |
