Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0027340 | OGI:02074660 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:26944046-26948813 | ||||||||
| Gene Symbol | OsRab1C3, OsRab1 | ||||||||||
| DNA seq | ggtcgcacgcccaccttcccccacgtcttcctctctctcccccgtcttcgcctcgcgctcgcgtctccctccctccctccttccgtccagatccgcgtgggctcgaagaagcggcgggcgatccacggcgagcgtcccgcggtcactcccccccgtctccgtccggcatgaatcccgagtagtaaggcctccgatcttccttccttccttccttcgtatgggctttgttgatctcgcgcggctttcacggtgatggttggttggcggggtttgcgcgggctagggagacggatctgagcgggagagcgctggtttggctccctttcgtcgtttggatctggatctggctaggggattcgtttggatttgtggttgtggatgtcgcgcgtgtcttggggcttgttgaggatgcgatgttgttgttgtggtgggttggggggatgggatgtgcggagttagaaaggaatttcggcaatccctcacgctgcatacacacggttatgtgatttctgatggctcatgcttaggagctgggtcgtgggtcataatatttttggaatgggtattggattatgttctaccagaatttagctgcttaaaatgtttcctgaaatgcgtgcctatttatcagcagaagtccatctgctctggacaaaacattgccatatttgcatatcttcaacaagtagttatggtaggcatatggtcctgtactcctgtctggataatagtatattattaactattgaactctctgtgactggtagtagcatagcgcatttcccaatctcccatctgtagccggtgtatgcatgattattccagttactccagttacttttatctgtatatggaaggcaaacttaaacaatataatggtacctgtttggcagcgtatcctatgcacacagctaggtagatgcactcatgcacacgcctatctggagcctttggatcaacatcctacggccaagatttttcgattagccaccagcctcctacttatcttttgtaaaagacccctccataactctcttattccctctagcagtttattttgcaaaaggaaaaagaaaaaaaaatcacccattccattctggatcttagttgtagtcactccccgtctgtccggcatgaatcccgagtagtaaggcctatgatccctcgcctccttccttcctatggttcgtgtgctcttccgtgatctcgctcggtttcgccgtgctggttgttcggtggccacgtttgtgtcgtggctgggtattttggctggatctgagtgggagagcgctggcggatcgctttgcatggttgttggctaggttttcgtgttctaacatgtggttttgacgtgcgcgtgggcgggcggcggctatcgcggtgcgtcctgggggttggggattgttgaggatgtgctcttcattatgacgtttactgggtaacggcatgggcggaattacaaaggggaattcagcaatcacatcatgatttctgatggctcatacatagtactcggtagtgggttatatttggggaatgggaattgtattttattctaccagaatttagtttgaaatgttgcttcatatgtgtgccaatttatcagctgatgtccatatgcactttagttatgtgtaaaacattgccatattttggatttggttatcttcagcaagtactaatagtacgcatattggccccgtttggataatagcatattaacatacattggagcagatgtatgcataattgttcagttgcttttacctgtatatagaagggagtcataaacaatacaatggtctctattgacatttatttctagttcatagcattcatgtcatgatttgatagttatgtatataaagggaagttgacttttgggatttgggaagataatgttttattgtaagtaattcccactactgttggagtatattacatgtgataaaacactatgttgttgaaatgaaggtggcagtcctatgcctgtaattattatttcattttgtctatgtactgctactgtaacactagtttttttgtgtcaatttcagcgactaccttttcaaacttctcctcattggtgattctggtgttgggaaatcgtgcttgcttctcagatttgcggtatgagttaaactcattctcctaattgtgctcttgtactaagttattcaggaatatatagtttcttacatgtggtccatgtaaatgtgcttcagtacaagcatgcagtgtaacaccatataccccactcttgcaatagaaaagtggttatgataattatgcaaggaattccttccattggtcatcttgttgtataaacatgaattgtagatcatgaatccacaattcactcgtatttaataataaagaatcaagtttgaagcttgactaatttttctgttccgtagattgtgaatgttattgatgtacttacctcctgtgattaggatgattcatacctggacagctacatcagcacaattggagttgattttgtaagcaatatattcttgatttactttttgagttaaatttactttgttgtagcacagcaataagttatacattatgtttgcagaaaatacggacagtagagcaggatgggaagaccatcaagcttcaaatcgtaagattactgctaccttttcttcatcgcttttgatcctgtattgtttttacttttgctagacaaattcacaaataaggatgtccagttatgatgctatggttattgtcaatgaatctaggaagatatgttctgaaggttatgttcccatatttgtgaaatattacagaaagatatgctcctatataatttatttttgtaaaaatcacactaacgagggaagagaagtttggaacatgcacaacaccaaggaactcagcctgagtccatttattaccctgaactacaaaactggttatttttttcaaaacattcaaaactggacacataacaccctgaaccatatgttatggtggttgtgatcaaaatggtagtgattttttcttttgctagcatgaattttaattatgtaagtttcatggtggtggacattattaagtgacatttgcatcaagaaaatatgcatattaagagtctgaattaggaaaatcatgtctatttcaaacaaaaccactaacaaattatgtcttagggtgttttttgtctgcttttaaaaggtgagagtgaaaaataatcatttttttgtagtttggggtgaaatagtttgaacaaaaagttcaaagggctaaagctggactttaacccttattgaaatatggatatgatagtatttacccatatttgaatatgtgtttaaatgctgaacgctgtatcgacatctgaactcaattctggcaaaagtatactttataaattaaaacccagaattggattcagatacgggccatagagtgcattggtatgtccatcattgttattgcaaattgtgccactgatgagaaatctttaaatttatttagaaacgattcttttatgagtagcaaactttgagaagtacattaaacttggtgaaatgtgatccatatccatagagtaatctgaagtggagcaacggtccaaatgcatcatgaatttagtatttgaaaacattgatgataagactgtggtatgagtatactcttttactttgttacagtgggatactgctggacaagaacgtttcaggacaattacaagcagctattaccggggagctcatggaattattgtaagttggccacatgatccaaccactattttctgcaatgtattggccatcttgtccccttcataaactaattcatcctatcctgtgcatgcagattgtatatgatgtgacagaccaagaaagcttcaacaatgtgaagcagtggttgaatgaaattgatcgttatgcaagtgacaatgttaacaagctcctcgttgggaacaagagcgacctaactgccaacaaagttgtgtcatctgaaacagctaaggtaagctcttcagaatcatttgatgtactgtgtattggttggctttctcacgatcatcatgcactgtccttattgatacacatttcacatatctacaattgttaaaaatcctgcaggcgtttgctgatgagatgggcatcccattcatggagacaagtgccaagaacgccactaatgtggagcaggcctttatggctatggctgcatccatcaaggacaggtacagcattaaaaatctatccctgagcacatgagcagtgtagctctcgtattaccctgatatccgggtaaattttactcctgtcgtttttctcaggatggcgagccaaccggccgctgcaaatgcaaggccaccgacggtgcagatccgcgggcaacctgtcaaccagaagacgtcgtgctgctcgtcctaaagataacgaagtacttccttctatgtaaaattcgacgtatgttactactgtttgctcactacaacgtatttgtaatattcatttgaacgccctcgatagcatcttttctttaatcagatggttagggagctgcaaatatatatgtaactttgctgtgttgctctttgctcacgaatcaagaggagcaagcagaaccagtgtatttgattcattttacgcttacattttgtcctttctcgcaatctccgttcgtttgcatagaaagtattttctcttgcatggtttagttagactcgaccagattacaaatttacaatttctcacagtgctggaaagttaattgtgcgttggtagattggcag
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| CDS seq | atgaatcccgagtacgactaccttttcaaacttctcctcattggtgattctggtgttgggaaatcgtgcttgcttctcagatttgcggatgattcatacctggacagctacatcagcacaattggagttgattttaaaatacggacagtagagcaggatgggaagaccatcaagcttcaaatctgggatactgctggacaagaacgtttcaggacaattacaagcagctattaccggggagctcatggaattattattgtatatgatgtgacagaccaagaaagcttcaacaatgtgaagcagtggttgaatgaaattgatcgttatgcaagtgacaatgttaacaagctcctcgttgggaacaagagcgacctaactgccaacaaagttgtgtcatctgaaacagctaaggtaagctcttcagaatcatttgatgcgtttgctgatgagatgggcatcccattcatggagacaagtgccaagaacgccactaatgtggagcaggcctttatggctatggctgcatccatcaaggacaggatggcgagccaaccggccgctgcaaatgcaaggccaccgacggtgcagatccgcgggcaacctgtcaaccagaagacgtcgtgctgctcgtcctaa
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| Protein seq | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVSSETAKVSSSESFDAFADEMGIPFMETSAKNATNVEQAFMAMAASIKDRMASQPAAANARPPTVQIRGQPVNQKTSCCSS |
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| Function | GTP-binding protein YPTM2 [UniProtKB/Swiss-Prot:Q05737] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0027340 | OsCMeo_02g0027340.01 | Chr02 | 26944046 | 26948813 | + | NAM | ||
| CDS seq | atgaatcccgagtacgactaccttttcaaacttctcctcattggtgattctggtgttgggaaatcgtgcttgcttctcagatttgcggatgattcatacctggacagctacatcagcacaattggagttgattttaaaatacggacagtagagcaggatgggaagaccatcaagcttcaaatctgggatactgctggacaagaacgtttcaggacaattacaagcagctattaccggggagctcatggaattattattgtatatgatgtgacagaccaagaaagcttcaacaatgtgaagcagtggttgaatgaaattgatcgttatgcaagtgacaatgttaacaagctcctcgttgggaacaagagcgacctaactgccaacaaagttgtgtcatctgaaacagctaaggcgtttgctgatgagatgggcatcccattcatggagacaagtgccaagaacgccactaatgtggagcaggcctttatggctatggctgcatccatcaaggacaggatggcgagccaaccggccgctgcaaatgcaaggccaccgacggtgcagatccgcgggcaacctgtcaaccagaagacgtcgtgctgctcgtcctaa
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| Protein seq | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVSSETAKAFADEMGIPFMETSAKNATNVEQAFMAMAASIKDRMASQPAAANARPPTVQIRGQPVNQKTSCCSS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0027340 | OsCMeo_02g0027340.02 | Chr02 | 26944053 | 26948692 | + | NAM | ||
| CDS seq | atgaatcccgagtacgactaccttttcaaacttctcctcattggtgattctggtgttgggaaatcgtgcttgcttctcagatttgcggatgattcatacctggacagctacatcagcacaattggagttgattttaaaatacggacagtagagcaggatgggaagaccatcaagcttcaaatctgggatactgctggacaagaacgtttcaggacaattacaagcagctattaccggggagctcatggaattattattgtatatgatgtgacagaccaagaaagcttcaacaatgtgaagcagtggttgaatgaaattgatcgttatgcaagtgacaatgttaacaagctcctcgttgggaacaagagcgacctaactgccaacaaagttgtgtcatctgaaacagctaaggtaagctcttcagaatcatttgatgcgtttgctgatgagatgggcatcccattcatggagacaagtgccaagaacgccactaatgtggagcaggcctttatggctatggctgcatccatcaaggacaggatggcgagccaaccggccgctgcaaatgcaaggccaccgacggtgcagatccgcgggcaacctgtcaaccagaagacgtcgtgctgctcgtcctaa
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| Protein seq | MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVSSETAKVSSSESFDAFADEMGIPFMETSAKNATNVEQAFMAMAASIKDRMASQPAAANARPPTVQIRGQPVNQKTSCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr02 | 26948038 | 26948155 | + | OsCMeo_02g0027340.02 | OsCMeo_02g0027340.01,OsCMeo_02g0027340.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.441699 | 66.573555 | 25.319950 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0653800 | RBH | 3.632182 | 4.619202 | 15.390206 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43690 | RBH | 0.921989 | 0.518228 | 1.741767 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0653800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027390 | RBH | 1.451166 | 49.082157 | 16.633587 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027500 | RBH | 0.530203 | 15.963408 | 9.791171 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005830 | RBH | 0.848230 | 52.629498 | 24.515047 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026940 | RBH | 0.488239 | 3.065134 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027060 | RBH | 9.381066 | 60.868004 | 47.055187 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0428900 | RBH | 15.079978 | 35.589596 | 27.8238365 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026860 | RBH | 0.419233 | 5.789696 | 4.080960 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0456600 | RBH | 20.086995 | 29.180087 | 41.6021615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027200 | RBH | 0.746128 | 0.794804 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026880 | RBH | 2.305654 | 50.890495 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027250 | RBH | 8.947151 | 33.313087 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027070 | RBH | 1.581488 | 4.215120 | 3.235657 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026780 | RBH | 0.735444 | 33.380291 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027380 | RBH | 1.647104 | 28.590944 | 6.865736 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027110 | RBH | 1.336314 | 55.433830 | 21.661436 |
