Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0027310 | OGI:02074560 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:26921798-26923714 | ||||||||
| Gene Symbol | UCL4, OsUCL4 | ||||||||||
| DNA seq | agggtcaccatcaaatagtgctaatattacggagtatttttgcaaagggagtaatcaaagttccaatacgaaatcgcggtcgtagtagtacaatacaaagacgagttcacggagcgcgtaaactaataaggaaaaattaaacgtcgcggagaaataatagccgaactggatgaagatgagcagcactgcctcttgcctagcctagcccatcatggcgaggccgacggccccgaccagcaggcccatcaccgaacgggcctcgctgccgctggccccgccggtgctgcccgtcgacttcgtcgtcgtcgtcgtcggcgtcgtggtcgcgtccggcgtcgacgagggcgtgtccatgccggggtccgatgacggcgtggcgggcgtcgcggtggacggcggggacgacgacgccgtcggggtgggggtggtggcggccgccgcggagaccgtgacggcgagcttcatgccgccggagcagtggccgctggtgccgcagatgaagtagcgggtgccgggcttggtgagcgcgatcttggtgttctggtcgctgtaggactggatcgagttgctggcggagcacgcgctgtagtcagccgagctcacctccgccaccgtgtgcatcatgctgtactggaacactgcacatagccacacaccacggcaaaacgtgcgtgtcagtgtcacgtttagtttgggcacagagaggaccagcttgcactggtcatctatcaagcgtcaatttataggtaaccagaaatgggtggagttatgttcccacgtacagtacccctcttctgtcatagtacacatttaacgcttttaaacttttgtgcattaagtttacgatgctatgatagtactgccctattcttagaatatatcataaaatgtagttattttttcacctactcatttcaaccaatcgcaatcatttttttcacatattttctctcatcgaccaatcacacacttcctccaattaatttcacctgctatcctaacacatgtgctaaacttaaaaatgcttatattttgtaacggaggatacagtagtactacttttcaaagtaaatttatctaccaattttctcttaaaaaaacttaaacatatcagaagtactctattatcgtaaagtttcaaaagtttaattaaattttgtaataaacatagaatattgccaggctggcagtttttgcctcgcaagccgatagtgatacactactacacagtactaccgctactatagctctggacaaaccaaatttgtggtccagagcaacatgaagggctggtttggtttgtgatctaaattggccttaccaatttttatcgatgccaaattttagcaagttttgtcatggctaattttgacaaggcaaagttgtgtttggattgaaaccaaaatagcctatgttaactattgaaatgacatattttcttaggcatgtcaaaatttgacttcaaaccaaatagacactgaacactgttgaaattatcaaatattggtaaggccaatttaggcctcaaacgaaaccgtcccgtaacatcgatcgtctagcattgttggtagacggcacgtcgatcattaacaacaactgtttcgtactacttgatactgaaagtattgttggttagtagtattaagcttatctagagtagtaatgtaactttaccgagcgagtcaccaacgctgaaggttttgctcttcgcccaggtatcgtagtccacgccactgctccagccggatgtgtcgccgacggtgtagtccacggcgaaagccggcgcaacggcggcgaggagtagcaccaccagacctgcagctgcaagtccatgtactccagccatgatggcagagttaattagcaaacgcgaactgattagagccgtactagtactggtggcttcactgaattagt
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| CDS seq | atggctggagtacatggacttgcagctgcaggtctggtggtgctactcctcgccgccgttgcgccggctttcgccgtggactacaccgtcggcgacacatccggctggagcagtggcgtggactacgatacctgggcgaagagcaaaaccttcagcgttggtgactcgctcgtgttccagtacagcatgatgcacacggtggcggaggtgagctcggctgactacagcgcgtgctccgccagcaactcgatccagtcctacagcgaccagaacaccaagatcgcgctcaccaagcccggcacccgctacttcatctgcggcaccagcggccactgctccggcggcatgaagctcgccgtcacggtctccgcggcggccgccaccacccccaccccgacggcgtcgtcgtccccgccgtccaccgcgacgcccgccacgccgtcatcggaccccggcatggacacgccctcgtcgacgccggacgcgaccacgacgccgacgacgacgacgacgaagtcgacgggcagcaccggcggggccagcggcagcgaggcccgttcggtgatgggcctgctggtcggggccgtcggcctcgccatgatgggctag
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| Protein seq | MAGVHGLAAAGLVVLLLAAVAPAFAVDYTVGDTSGWSSGVDYDTWAKSKTFSVGDSLVFQYSMMHTVAEVSSADYSACSASNSIQSYSDQNTKIALTKPGTRYFICGTSGHCSGGMKLAVTVSAAAATTPTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTTPTTTTTKSTGSTGGASGSEARSVMGLLVGAVGLAMMG |
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| Function | Blue copper protein [UniProtKB/Swiss-Prot:Q41001] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0027310 | OsCMeo_02g0027310.01 | Chr02 | 26921798 | 26923714 | - | NAM | ||
| CDS seq | atggctggagtacatggacttgcagctgcaggtctggtggtgctactcctcgccgccgttgcgccggctttcgccgtggactacaccgtcggcgacacatccggctggagcagtggcgtggactacgatacctgggcgaagagcaaaaccttcagcgttggtgactcgctcgtgttccagtacagcatgatgcacacggtggcggaggtgagctcggctgactacagcgcgtgctccgccagcaactcgatccagtcctacagcgaccagaacaccaagatcgcgctcaccaagcccggcacccgctacttcatctgcggcaccagcggccactgctccggcggcatgaagctcgccgtcacggtctccgcggcggccgccaccacccccaccccgacggcgtcgtcgtccccgccgtccaccgcgacgcccgccacgccgtcatcggaccccggcatggacacgccctcgtcgacgccggacgcgaccacgacgccgacgacgacgacgacgaagtcgacgggcagcaccggcggggccagcggcagcgaggcccgttcggtgatgggcctgctggtcggggccgtcggcctcgccatgatgggctag
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| Protein seq | MAGVHGLAAAGLVVLLLAAVAPAFAVDYTVGDTSGWSSGVDYDTWAKSKTFSVGDSLVFQYSMMHTVAEVSSADYSACSASNSIQSYSDQNTKIALTKPGTRYFICGTSGHCSGGMKLAVTVSAAAATTPTPTASSSPPSTATPATPSSDPGMDTPSSTPDATTTPTTTTTKSTGSTGGASGSEARSVMGLLVGAVGLAMMG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0027310 | OsCMeo_02g0027310.02 | Chr02 | 26921839 | 26923714 | - | IsoSeq | ||
| CDS seq | atggacttgcagctgcaggtctggtggtgctactcctcgccgccgttgcgccggctttcgccgtggactacaccgtcggcgacacatccggctggagcagtggcgtggactacgatacctgggcgaagagcaaaaccttcagcgttggtgactcgctcggtaaagttacattactactct |
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| Protein seq | MDLQLQVWWCYSSPPLRRLSPWTTPSATHPAGAVAWTTIPGRRAKPSALVTRSVKLHYYS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 201.352188 | 0.663100 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0653200 | RBH | 0.0 | 0.0 | 0.859821 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43660 | RBH | 0.0 | 0.0 | 0.175350 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0653200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027360 | RBH | 0.0 | 99.241188 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027470 | RBH | 0.000000 | 36.243618 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022320 | RBH | 0.0 | 1.992371 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026910 | RBH | 0.0 | 5.292136 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027030 | RBH | 0.0 | 116.484818 | 1.284952 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0428400 | RBH | 2.739906 | 22.8474865 | 0.1923995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026830 | RBH | 0.0 | 9.954930 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0456200 | RBH | 2.6353445 | 5.290277 | 0.0766735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0027170 | RBH | 0.0 | 0.477673 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026850 | RBH | 0.0 | 41.326992 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027220 | RBH | 0.0 | 214.737671 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027040 | RBH | 0.0 | 9.833268 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026750 | RBH | 0.000000 | 129.090454 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027350 | RBH | 0.0 | 7.107299 | 0.405072 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027080 | RBH | 0.542520 | 83.423615 | 0.0 |
