Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0027110 | OGI:02074080 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:26768067-26772127 | ||||||||
| Gene Symbol | RLCK80, OsRLCK80 | ||||||||||
| DNA seq | tttttagtccatgcaaatatcaaatcaatcacaatttttttcatacggaaacattttcagagtctacattcacaagttcagaactcgtaacaaaaaagagaaagcagaattacattttgtatttacaaagacaccacaaagaactcctcacagtattaactgtaagtctgatgtttgactgaacctacagaattgtgtattacaaatctacagtaagcaaaatgttggatctttttaaagtatttatagtgataaaaaagttgactaatggacctacctttacaagcacatcagaataatacagtcaagaacaccaactcttgcagaagtttatgttggagttggagcagcagctgccctcatgagcatgaatctcctcctcgcaatattgtttgcattttcacctagcgcagccaggtgaagcatccgccgccttgctgccgccacagcaacatcatctgcggttggcttcccaggaacctcatgaggtggtgagctctcccctgatgcctcgacgtcaccatccaattcgttgtgctgcatcacttgctttatgctctccaccacctctctcatagttgggcggtcttttgcatgttttgcaaggcagctgttggccaatttggcaatttctctagtgccctgcttagagtaattgtgcctgagtctgatatctataatcctgctgaacctcttagtctcaacaggatactgcctcacccattccaggagtttctgctcgttcttgggacgattcctttccattgaacggcgtccggtgaggatctcatataggacaactccaaagctccaaacatcactcttgtttgtgagatggcctgtctcaacatagtctggagctgcataaccataagtccccataacctgatagcagtaaagaaaattgttcttggtgagctatgaaatccatgttccattatctattttgataagaactggaatgtgcagaagctgcatagaggaattcctttactttgatcaatgaaaataaatcagtacttaccgctgtggacacatgagtgttatctgcagttggcccttcccttgctaatccgaagtctgaaagtttcggtctgaattcctcatcaagtagcacattggatgctttgaaatcacggtatatgacctataaaattttcaagtctgaaacaagaattttctgtgtttcctcaagcaaagtcaaaaccataattgacaggattgcatttttaaggatctcttaaaagccatttacaagctggaggtaacattcatcgttgggagaatagccactatggtccctgaagtttcgctctgagatcattttagtccctgacctttcaaattgtccaagcaagcccttaaactttatcatgtggacatatacagtccttggcccatcgaaaattgccacgtggacatgccatgtcatcttccaatgcaaatatatgatgacatacccaattttcccttacacatatcgtcatagggaaaaaagagagaaagaaaaggagaaaaataataataataaagaagtaggtgatcctgcatattaaatatccgttagagttttaacattgaaatgcaactacttacatgaaatttatttggcatgataattatatatttagtggttgtagctaatttAactttgtattagcataatccagtgaaaaaagtttgccatatatccagtcacattgaataaagtttgtaaattcttttcattattttttatggtacatggaagggtaaattggacattttaccatatattttgcatgagagcataacatggcatgctcatgtggcaatttaagtggaactaaggactatattagcccacatgacaaattataaggactcgtttggacaatataaaaggttagggaccaaattaatcatggagcaaaacttcaaggatcatgttggctattctcccttcatcgttcatggtaatcattttctttcaagtatgtcccattcaatcaatatgtcatatgactcaacggacattcaaaatacttgcaataaaaaggattgagtaatatgtccatccaagctatatgattagattcattccagatctccagtcatgaaatatatagttaactttaaaattcagaagtgttgcaaaaagatcaacataattgacttgcagacaaccattcttgcacagcatttgctaaatcacaacattaatatggtatggctcagggacaccaacaaactgtgaggcctttagcaatataactctattaaaagctgtcctatttcagactttaggggagaaaatgggtaatccgttatgattcagatgaataaaatgaatttcttgatggtgagttgccagcggtgttacctgaacttccaatccctcatggaggtacaacaacccctcagcagcacccaatgctatcttcaacctgatgtcccatgggaggacgggatatgctttattgaatagatgatcatccaaggtcttgttcgacatgaactcatataccagcaacctctgagggcctcgttcactctgagcggcacaatatccaatgagcttgacgagattcgggtgctcaacaaCccctagaaattgaacttctgtcagccattgcttgtgaccctgatcagaattgggataggacagaaaaggataaggtaaaacactgaatggtttctaggctcttaaatataagcattgaaatgaacctacaattttaattacatagaaggcatgcatctatgtacaccattagaaactacagaacaaagaagtgagaagacaaaaacattgaaatgatacactaacgccatcacaaatcttattaccgtgttagcaaattccatattatctactagactatacatagttattcagaccatgctcagcttaggaagccaatatgccgcagagttgcataattcacatattagaactaccacaatagaagtcagaagtatgaatgtcaattggcaggtacttataaattgtaaagtactggctagtgatcagggattccaaaagtttgagcccaaattttttaattgaaaaacagctgcattttctttgtttaaaatttttgggtttaaacttcagtttgataatttttttctagtgattatatactagtaatatagttggattaacccggacaacaccgcccaattggacaattaaattgcagaggaaggatacctgtcggctgttgggattgagcttttttatggcgacctcggtgccaccggcgggccctccgggcagccgaacgacgcccttgtagacgctcccgaagccgccctcgccgatcttgagcaggcggctgaagtccctggtcgccgcctggagctcccggagcccgaactcctgcagggagctcgcgcccctctcctcgtacagctccgggatgctccgcgccgacgagaccgacccggacgacctgctccacccggcggcgggcctcgccgccgccgcgctcgagtcctcggtcgactggctcgtcgcgacggccgacgacgacaccgtggaggtggagtgggacgagccggcgagcgccgacggcggcggcggcggcggcgctggcccctcgtgcggcggcggcctcttcttccccttccgcttcttgatcatatccctcacgcggccgaagcagcccatctccgaggaacagtaagctggagagagggggattcgggtcagctcgtggtgctcttctccatggccttcacctcgtcagctcgaatcgtgaggagaaagggagcaacctttcggcgatagaaacggaagccttcttcttcttccttctccttgctgatcggatacaactacaagaactattttctcctggcctccacgaaacacgacaacaaacggagacgaacacgaacgaactcgcgtgagtcggtaaactgacgcagaatcgtttgacgcaagcaaggacgagggaaggatgacaccaatttgtgctgggtgaacaggaagttcgagtgtattttccttgttctttttcccctgggaggcgaagaattttgagccacgcttgctggacaagtacgggagtagt
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| CDS seq | atgggctgcttcggccgcgtgagggatatgatcaagaagcggaaggggaagaagaggccgccgccgcacgaggggccagcgccgccgccgccgccgccgtcggcgctcgccggctcgtcccactccacctccacggtgtcgtcgtcggccgtcgcgacgagccagtcgaccgaggactcgagcgcggcggcggcgaggcccgccgccgggtggagcaggtcgtccgggtcggtctcgtcggcgcggagcatcccggagctgtacgaggagaggggcgcgagctccctgcaggagttcgggctccgggagctccaggcggcgaccagggacttcagccgcctgctcaagatcggcgagggcggcttcgggagcgtctacaagggcgtcgttcggctgcccggagggcccgccggtggcaccgaggtcgccataaaaaagctcaatcccaacagccgacagggtcacaagcaatggctgacagaagttcaatttctagggGttgttgagcacccgaatctcgtcaagctcattggatattgtgccgctcagagtgaacgaggccctcagaggttgctggtatatgagttcatgtcgaacaagaccttggatgatcatctattcaataaagcatatcccgtcctcccatgggacatcaggttgaagatagcattgggtgctgctgaggggttgttgtacctccatgagggattggaagttcaggttatggggacttatggttatgcagctccagactatgttgagacaggccatctcacaaacaagagtgatgtttggagctttggagttgtcctatatgagatcctcaccggacgccgttcaatggaaaggaatcgtcccaagaacgagcagaaactcctggaatgggtgaggcagtatcctgttgagactaagaggttcagcaggattatagatatcagactcaggcacaattactctaagcagggcactagagaaattgccaaattggccaacagctgccttgcaaaacatgcaaaagaccgcccaactatgagagaggtggtggagagcataaagcaagtgatgcagcacaacgaattggatggtgacgtcgaggcatcaggggagagctcaccacctcatgaggttcctgggaagccaaccgcagatgatgttgctgtggcggcagcaaggcggcggatgcttcacctggctgcgctaggtgaaaatgcaaacaatattgcgaggaggagattcatgctcatgagggcagctgctgctccaactccaacataa
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| Protein seq | MGCFGRVRDMIKKRKGKKRPPPHEGPAPPPPPPSALAGSSHSTSTVSSSAVATSQSTEDSSAAAARPAAGWSRSSGSVSSARSIPELYEERGASSLQEFGLRELQAATRDFSRLLKIGEGGFGSVYKGVVRLPGGPAGGTEVAIKKLNPNSRQGHKQWLTEVQFLGVVEHPNLVKLIGYCAAQSERGPQRLLVYEFMSNKTLDDHLFNKAYPVLPWDIRLKIALGAAEGLLYLHEGLEVQVMGTYGYAAPDYVETGHLTNKSDVWSFGVVLYEILTGRRSMERNRPKNEQKLLEWVRQYPVETKRFSRIIDIRLRHNYSKQGTREIAKLANSCLAKHAKDRPTMREVVESIKQVMQHNELDGDVEASGESSPPHEVPGKPTADDVAVAAARRRMLHLAALGENANNIARRRFMLMRAAAAPTPT |
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| Function | Probable serine/threonine-protein kinase PBL19 [UniProtKB/Swiss-Prot:Q9LTC0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0027110 | OsCMeo_02g0027110.01 | Chr02 | 26768067 | 26771721 | - | NAM | ||
| CDS seq | atgggctgcttcggccgcgtgagggatatgatcaagaagcggaaggggaagaagaggccgccgccgcacgaggggccagcgccgccgccgccgccgccgtcggcgctcgccggctcgtcccactccacctccacggtgtcgtcgtcggccgtcgcgacgagccagtcgaccgaggactcgagcgcggcggcggcgaggcccgccgccgggtggagcaggtcgtccgggtcggtctcgtcggcgcggagcatcccggagctgtacgaggagaggggcgcgagctccctgcaggagttcgggctccgggagctccaggcggcgaccagggacttcagccgcctgctcaagatcggcgagggcggcttcgggagcgtctacaagggcgtcgttcggctgcccggagggcccgccggtggcaccgaggtcgccataaaaaagctcaatcccaacagccgacagggtcacaagcaatggctgacagaagttcaatttctagggGttgttgagcacccgaatctcgtcaagctcattggatattgtgccgctcagagtgaacgaggccctcagaggttgctggtatatgagttcatgtcgaacaagaccttggatgatcatctattcaataaagcatatcccgtcctcccatgggacatcaggttgaagatagcattgggtgctgctgaggggttgttgtacctccatgagggattggaagttcaggttatggggacttatggttatgcagctccagactatgttgagacaggccatctcacaaacaagagtgatgtttggagctttggagttgtcctatatgagatcctcaccggacgccgttcaatggaaaggaatcgtcccaagaacgagcagaaactcctggaatgggtgaggcagtatcctgttgagactaagaggttcagcaggattatagatatcagactcaggcacaattactctaagcagggcactagagaaattgccaaattggccaacagctgccttgcaaaacatgcaaaagaccgcccaactatgagagaggtggtggagagcataaagcaagtgatgcagcacaacgaattggatggtgacgtcgaggcatcaggggagagctcaccacctcatgaggttcctgggaagccaaccgcagatgatgttgctgtggcggcagcaaggcggcggatgcttcacctggctgcgctaggtgaaaatgcaaacaatattgcgaggaggagattcatgctcatgagggcagctgctgctccaactccaacataa
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| Protein seq | MGCFGRVRDMIKKRKGKKRPPPHEGPAPPPPPPSALAGSSHSTSTVSSSAVATSQSTEDSSAAAARPAAGWSRSSGSVSSARSIPELYEERGASSLQEFGLRELQAATRDFSRLLKIGEGGFGSVYKGVVRLPGGPAGGTEVAIKKLNPNSRQGHKQWLTEVQFLGVVEHPNLVKLIGYCAAQSERGPQRLLVYEFMSNKTLDDHLFNKAYPVLPWDIRLKIALGAAEGLLYLHEGLEVQVMGTYGYAAPDYVETGHLTNKSDVWSFGVVLYEILTGRRSMERNRPKNEQKLLEWVRQYPVETKRFSRIIDIRLRHNYSKQGTREIAKLANSCLAKHAKDRPTMREVVESIKQVMQHNELDGDVEASGESSPPHEVPGKPTADDVAVAAARRRMLHLAALGENANNIARRRFMLMRAAAAPTPT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0027110 | OsCMeo_02g0027110.02 | Chr02 | 26768085 | 26772127 | - | IsoSeq | ||
| CDS seq | actactcccgtacttgtccagcaagcgtggctcaaaattcttcgcctcccaggggaaaaagaacaaggaaaatacactcgaacttcctgttcacccagcacaaattggtgtcatccttccctcgtccttgcttgcgtcaaacgattctgcgtcagtttaccgactcacgcgagttcgttcgtgttcgtctccgtttgttgtcgtgtttcgtggaggccaggagaaaatagttcttgtagttgtatccgatcagcaaggagaaggaagaagaagaaggcttccgtttctatcgccgaaaggttgctccctttctcctcacgattcgagctgacg
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| Protein seq | TTPVLVQQAWLKILRLPGEKEQGKYTRTSCSPSTNWCHPSLVLACVKRFCVSLPTHASSFVFVSVCCRVSWRPGENSSCSCIRSARRRKKKKASVSIAERLLPFSSRFELT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 26768951 | 26770429 | - | OsCMeo_02g0027110.02 | OsCMeo_02g0027110.01,OsCMeo_02g0027110.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.716058 | 0.0 | 2.179784 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0650500 | RBH | 1.028141 | 0.541812 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43430 | RBH | 0.350593 | 0.239202 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0650500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027170 | RBH | 0.359802 | 5.356683 | 0.600576 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027280 | RBH | 0.000000 | 0.743551 | 0.602244 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0022130 | RBH | 0.522298 | 3.521789 | 1.937177 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026720 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026830 | RBH | 2.290137 | 0.000000 | 6.247475 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0425900 | RBH | 2.5260475 | 6.4625795 | 0.880002 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026630 | RBH | 0.0 | 0.075946 | 0.158500 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0454400 | RBH | 2.300131 | 7.491783 | 1.2147845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026970 | RBH | 0.130994 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026650 | RBH | 0.0 | 2.860833 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027010 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026820 | RBH | 0.469254 | 0.113033 | 0.299303 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026540 | RBH | 0.111805 | 2.952373 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027150 | RBH | 0.378572 | 0.402763 | 0.403048 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026880 | RBH | 0.450596 | 3.811212 | 2.226665 |
