Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0025700 | OGI:02070770 | 16/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:25450673-25452153 | ||||||||
| Gene Symbol | PPCK2, OsPPCK2, OsPPCK2L, OsPPCK2S | ||||||||||
| DNA seq | acccccaaaatcacaggaaaaactactagcatgagtggagagctgaagagagactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacgtcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgacgacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggcaacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtcatggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgcccgtcccggagcccgtcgccgccgccgtcgtcgcgcagctcgcggaggcgctcgcgcactgccaccgccgcggggtcgcccaccgcgacgtcaagcccgacaacatcctcctcgacgtcgtcgacgacgggatcgacggcggcggcacgccgcgcgcgcggctcgcggacttcgggtcggccgcgtgggtcggggagagcggcggcagcgccgagggcctcgtggggacgccccactacgtggcgcccgaggtcgtcgccggcggggagtacggcgagaaggccgacgtgtggagcgccggggtggtcctctacgtgctcctctccggcggcgccctccccttcggcggcgagaccgccgccgaggtgctcgcctccgtcctccgtggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctcatgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctcggtaagaacaacccaaccaaatcctcgaaatcttcatggatttcacctcattttccgcccagtttccgatccaagagaacaaaccatcttatcgcttgccgcgctgttcgtaatgcaggtcacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctgaacggcggccgcgtccacgtcaagagggggcagacagaggcagcgaatcagtcggtgccacgtgtcgccgtagtcctagggagatacggcgatattttacagccgtagtctatacggttttgtatatacgacgagacggtagagagagatccctgcagcggatccgctgtagggtgtcgcggtattgcagatctgcagtagagagaataatcagagtattgattgaagaagaagctcgtgcagtcatgctaggcttcttttttctttcacggttccaggtttgctctgtctctagagagatcagagagccttaattttcgctttgtttttttttgtatgatgatgagtcaggttgtatatacgctaacgtaagtactaagcttttgtacaaatcgatcggagttgaataaaaatcgggcttgtgctctgcttcggcttccgtttttttcttctcaa
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| CDS seq | atgagtggagagctgaagagagactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacgtcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgacgacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggcaacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtcatggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgcccgtcccggagcccgtcgccgccgccgtcgtcgcgcagctcgcggaggcgctcgcgcactgccaccgccgcggggtcgcccaccgcgacgtcaagcccgacaacatcctcctcgacgtcgtcgacgacgggatcgacggcggcggcacgccgcgcgcgcggctcgcggacttcgggtcggccgcgtgggtcggggagagcggcggcagcgccgagggcctcgtggggacgccccactacgtggcgcccgaggtcgtcgccggcggggagtacggcgagaaggccgacgtgtggagcgccggggtggtcctctacgtgctcctctccggcggcgccctccccttcggcggcgagaccgccgccgaggtgctcgcctccgtcctccgtggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctcatgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctcggtaagaacaacccaaccaaatcctcgaaatcttcatggatttcacctcattttccgcccagtttccgatccaagagaacaaaccatcttatcgcttgccgcgctgttcgtaatgcaggtcacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga
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| Protein seq | MSGELKRDYEIGEEIGRGRFGVVHRCTSRATGEAFAVKSVDRSQLADDLDRELAELEPKLAQLAAAGNPGVVQVHAVYEDDAWTHMVMDLCSGPDLLDWIRLRRGAPVPEPVAAAVVAQLAEALAHCHRRGVAHRDVKPDNILLDVVDDGIDGGGTPRARLADFGSAAWVGESGGSAEGLVGTPHYVAPEVVAGGEYGEKADVWSAGVVLYVLLSGGALPFGGETAAEVLASVLRGSVRFPPRLFAGVSPAAKDLMRRMMCRDTWRRFSAEQVLGKNNPTKSSKSSWISPHFPPSFRSKRTNHLIACRAVRNAGHPWIVSGGGARAMEQPT |
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| Function | Phosphoenolpyruvate carboxylase kinase 1 [UniProtKB/Swiss-Prot:Q9SPK4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0025700 | OsCMeo_02g0025700.02 | Chr02 | 25450673 | 25452153 | + | NAM | ||
| CDS seq | atgagtggagagctgaagagagactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacgtcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgacgacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggcaacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtcatggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgcccgtcccggagcccgtcgccgccgccgtcgtcgcgcagctcgcggaggcgctcgcgcactgccaccgccgcggggtcgcccaccgcgacgtcaagcccgacaacatcctcctcgacgtcgtcgacgacgggatcgacggcggcggcacgccgcgcgcgcggctcgcggacttcgggtcggccgcgtgggtcggggagagcggcggcagcgccgagggcctcgtggggacgccccactacgtggcgcccgaggtcgtcgccggcggggagtacggcgagaaggccgacgtgtggagcgccggggtggtcctctacgtgctcctctccggcggcgccctccccttcggcggcgagaccgccgccgaggtgctcgcctccgtcctccgtggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctcatgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctcggtcacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga
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| Protein seq | MSGELKRDYEIGEEIGRGRFGVVHRCTSRATGEAFAVKSVDRSQLADDLDRELAELEPKLAQLAAAGNPGVVQVHAVYEDDAWTHMVMDLCSGPDLLDWIRLRRGAPVPEPVAAAVVAQLAEALAHCHRRGVAHRDVKPDNILLDVVDDGIDGGGTPRARLADFGSAAWVGESGGSAEGLVGTPHYVAPEVVAGGEYGEKADVWSAGVVLYVLLSGGALPFGGETAAEVLASVLRGSVRFPPRLFAGVSPAAKDLMRRMMCRDTWRRFSAEQVLGHPWIVSGGGARAMEQPT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0025700 | OsCMeo_02g0025700.01 | Chr02 | 25450673 | 25452153 | + | NAM | ||
| CDS seq | atgagtggagagctgaagagagactacgagattggcgaggagatcgggcgcggccgcttcggcgtggtccaccgctgcacgtcgcgcgccaccggcgaggccttcgccgtcaagtccgtcgaccgctcgcagctggccgacgacctcgaccgggagctcgcggagctcgagcccaagctggcccagctggccgccgcgggcaacccgggcgtcgtccaggtgcacgccgtgtacgaggacgacgcgtggacgcacatggtcatggacctctgctccggccccgacctgctcgactggatccgcctccgccgcggcgcgcccgtcccggagcccgtcgccgccgccgtcgtcgcgcagctcgcggaggcgctcgcgcactgccaccgccgcggggtcgcccaccgcgacgtcaagcccgacaacatcctcctcgacgtcgtcgacgacgggatcgacggcggcggcacgccgcgcgcgcggctcgcggacttcgggtcggccgcgtgggtcggggagagcggcggcagcgccgagggcctcgtggggacgccccactacgtggcgcccgaggtcgtcgccggcggggagtacggcgagaaggccgacgtgtggagcgccggggtggtcctctacgtgctcctctccggcggcgccctccccttcggcggcgagaccgccgccgaggtgctcgcctccgtcctccgtggcagcgtcaggttcccgcctaggctgttcgccggcgtgtccccggcggccaaggacctcatgaggcgcatgatgtgccgcgacacctggaggcgcttctccgccgagcaagtcctcggtaagaacaacccaaccaaatcctcgaaatcttcatggatttcacctcattttccgcccagtttccgatccaagagaacaaaccatcttatcgcttgccgcgctgttcgtaatgcaggtcacccgtggatcgtgagcggcggaggagcccgagcgatggagcagccaacctga
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| Protein seq | MSGELKRDYEIGEEIGRGRFGVVHRCTSRATGEAFAVKSVDRSQLADDLDRELAELEPKLAQLAAAGNPGVVQVHAVYEDDAWTHMVMDLCSGPDLLDWIRLRRGAPVPEPVAAAVVAQLAEALAHCHRRGVAHRDVKPDNILLDVVDDGIDGGGTPRARLADFGSAAWVGESGGSAEGLVGTPHYVAPEVVAGGEYGEKADVWSAGVVLYVLLSGGALPFGGETAAEVLASVLRGSVRFPPRLFAGVSPAAKDLMRRMMCRDTWRRFSAEQVLGKNNPTKSSKSSWISPHFPPSFRSKRTNHLIACRAVRNAGHPWIVSGGGARAMEQPT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0025700 | OsCMeo_02g0025700.03 | Chr02 | 25450673 | 25452136 | + | IsoSeq | ||
| CDS seq | atgctaggcttcttttttctttcacggttccaggtttgctctgtctctagagagatcagagag |
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| Protein seq | MLGFFFLSRFQVCSVSREIRE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 25450673 | 25452153 | + | OsCMeo_02g0025700.01 | OsCMeo_02g0025700.02,OsCMeo_02g0025700.01 | All |
| RI | Chr02 | 25450673 | 25451525 | + | OsCMeo_02g0025700.02 | OsCMeo_02g0025700.02,OsCMeo_02g0025700.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.561199 | 5.536256 | 15.497695 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0625300 | RBH | 0.683296 | 0.488446 | 7.463822 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g41580 | RBH | 0.456867 | 0.324814 | 1.905393 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0625300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025730 | RBH | 0.121479 | 0.0 | 12.286717 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025870 | RBH | 0.176835 | 1.471145 | 6.381571 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0020480 | RBH | 3.786765 | 3.645893 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0025310 | RBH | 0.147444 | 0.243779 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0025400 | RBH | 2.159598 | 34.262878 | 26.947613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0405400 | RBH | 18.985265 | 35.547001 | 216.7341995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025290 | RBH | 0.419166 | 1.002277 | 1.431853 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0434300 | RBH | 26.4415535 | 36.28105 | 211.411003 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0025490 | RBH | 0.341954 | 0.251052 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0025280 | RBH | 0.242129 | 9.307589 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0025630 | RBH | 3.180346 | 15.421880 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0025510 | RBH | 1.055614 | 0.492354 | 4.180753 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025070 | RBH | 0.766000 | 6.253405 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025700 | RBH | 0.846206 | 2.974953 | 13.057267 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025540 | RBH | 1.707701 | 9.508213 | 22.212877 |
