Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0020460 | OGI:02058020 | 15/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:20405517-20410224 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tttcatgaattcgttttacttgcatttcatcaaattgcgaacatttaggaaagtcagcaagagatactaatttgacaaaatagacacatctcctagcatttatacaatcaaagcacaagtgtgacaagcttgtacaaatgagcttatgctattgacatatccccatcataatggcatatttctaaacctgcaactctaagagtggcatgaaatctaatccttccaaagatatcatctctagttctctactctgttctacagactagtcctacatggttcatgtaatcatgttcacatacaggctacaaaatagtctacagttctgcaccatccaccatccgacgattgcaagagagctaacacttcgttggctactgacgatagatcatggatgtgctctgaatgtccttggtggcttggtatgtcacaattgatgagcgatatgcgggagaatttaacattcaaattgctaatcaacacaacaccaagtggctgtcactctggaacttggtgagcgctatcactgctaatcgtcagctagtcatgctgcgtagcatggcttgaacatgctgctgatggatgtacccaggtaaatggctgttcttggtagcctcaattactgactgatatgaatttgagaagttgatttgatcttcaacagagggccagttctgtcccaagagttatattgaagattgaaacaaatgtgcactatgattttcaacagagctgttgatttctacaaaccctgaaaagatggacaataaacagcagaaataaactagcaacttcatccattaactgcttaatggccaacagagcagtgacgtgggccatgattaacaaaaagctgagtttaattaaagataaagatcctgctatacccatgtgtagctacagccatttttcaattcttgcacattgtgactttaggaaattctgaaaataaaaacatttatagcatgttgacctatattcacacacaaaattatgtaaagatataatcatgtataggtgtgcaacaaaaattatgtaaagatagatcagctttctttctttgatgaaagataagacgatttagttttctttctcgtatagcacaaattgatcatatctgcatgtaaacgtaccttaaaatgctctatatgtatagtttttttcagaatctaaattgccaagtgcaaaatccaaagtggatggagctacacgagagttaaaaaatctaaacactttattaaattagaaagtaaggaggtggcaacttcaaagcttcatcaacatgaaagtgaggaaagagacaactgtgaaactttaccaatttatacctgctgattatgttgattgttacttgatggctgagaaaggtatgcagcaaaaccaagttcctgaaagcaatgaccgtgtaagtaattttttcaatattcagatacggcgcaaggggcaccatttcttatcaaaaagagagtaacaggcaattgacaatactcttgatacagtaggtaagcttgggcataggcctggttgtgactgcactcctccataattcagttgccccattggaaatggattagaaatgtcaagaccctgaaaatgaaaaagggaactaaaaattaaccatgttacatacaataactaacctcagggttagaacaggctacacaacttcaggtacatctaacatccatgcccagcatatatattgaaaagaatccagatggcgtgatgaattggcccggcattggaatgttggactaaaacgttgctgaggcatgaactatagtgaattcaagattctccagcccaaaatacccataatcatagtcctttgagctactatcagttatgaccacagtccatggtggtatggcataggattttaaatagaaaacctctgcattgcagaacttaaaagctgtagaaggccttaggaactacaaaattgagatgaaaaataacttgttcaatataaaattttaatagaaaaagaaacaacctgacgttacaggtttttgtgactgattccaattttgcatggagttcatatcacattaaaaagaacaatctgacaggaattctcaattgaaatgactgtagcaatataggattgttgggagtttacataaagcaaaggttcttgatgtcaccaccaactggctaccgtttagaataatatcagtttgtgattactatcacgttatgccatcaccatataatgaacaacaatgctgaaattacctgaaatagaacatttccaggttgagcagcatccaacatggtatattgtattggggattgttctggttgcactttcttggttttttgtaaacctttctcaatacaactttttcgttggcttttagcattacgacctttcttttttcgtcgcttcggtcttgtgctgcttgaataatccagtgctctttctgattcattgtcagtaccattcgcagacaaggatattgttacatcctcaatatcagactgaggagctgacgcatcaatgcttgtttgtttctgcaggatttcttcaattttcttacccagttctactgaacattgatctaatactctgtacgactcctcgcattctgatgctcgagcaacaagcctaacatatactgggcacaagtattcatagcggctagaaaattctaatgtggtatctgcctgaacctttcgaccttcaacctgcggtgcagtcaaacaccttccatatttggtccatcgcttcaggatgtacctatcaggcatatactttatgtccattgtatctaaaactttcaaagcatggctacacaggaaaccaagtgtctcaaacttcctacatgagcatgtaactgtctgctcacaagggtttccatgaactttataccgtctttctttctcaagaatggcaacaatatattcacggctgggaccactttcatcacgagtcacaatgtaagctgactgaaactcttcgtattcttcttggaaaagctgaaatatcataccagtataggcctcagaagcttgtctcagaataggagctctaatcttgaagtctggcaacttgagcctcgaactaaattcaacctccaattctatgtaccgtctatcattgaccaatttcttaagatgcttcaagaacgaaataatatctacatcagatttcaaataatcccgaacgtcagaatgtagacgttcatttaattgtgtgttcttcatcccagctgaaaatatccactttgtgtatggcctagcccacttctctttttcttcaaataccttctgcaaccacacgttgttgtgaaggttatatttactgatcatagcttcccaagcagtaaaaaactccacctcctcctcataatcattgatgcatgccttgaattcctttatgaaaccacaatcccctctaataaggtgattgaggttactttttgcagactgcttcaggttccatgtacatatggcatggcatgtgtcaggcatcaccagtgagatggcctttgatacaattgcgtcttggcgtgaaaagacagtccgcggtgcttgtccagacatcgcatgcaagaaggtctcaaacaaccactggaatgattcaaggctatcatcatacataagtgccattccaagcaaaacagtctccccataattgttaaatccaacaaaagaagcaaaaggtcggagattcatgttgtttctggggacaatatcaaaggaaacaacatcaccaaattgaccaaaatcaattaccatctttgcatcggcccagaaaatgtttgtaactttatcttcagcatccagctgtacagcatgataaaataaaggatctgctcgacattgatcctggaggtagtttaacagagcactggcttccccacacttaatttcccgctgccgcctagtatgcagagagcgctgagagatttctggggacttaatagttttctcggcaagaatggaatttctgctatcaggttcgctagcatgtgttacactagcagagttatcagcatcagaagactgaacatcacttaactttttttgcagtggatttgcacaggatggaatgaacaagggatgattatgctgtgcctcgaaagcatatacctcatactttgaagtatcatttttgcgcctgatgactaaattagcgtggcatcctgttcttgtatcaggctgtggagtcctcgtatggttggttcgtttgtctggggctttgaatccttccctcgaacaaacaaactttcttgaggttatttcaccagttttcctacttttgtttgcatattctcttcggacactgaaccccaacttccatgcgtaatagcgatagaattcatatgcttcatgttcagacgcaaactcttgccctaaccatggtgtataatctccagtcgctgcttggagtctgggaatgcaaggacctgcttcgctgtcctcaacagctgtgttacctaaattattttaagaaggaatttaaatctaaaagcatgatcaaaatgcaaacgtatctgcataggacaattgaaaatcaagaatatgatcaactagaaagtcatgtgcaaacataatggatatcttgcggtttattaagtgtggcacggtcttacttgggcactattatcaatttgcaaccgcaaatgccacaatttgatgaaagacaataatttaccggcactagtgcactattctccctgcaacacccaatcgcgttgcacat
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| CDS seq | atgtgcaacgcgattgggtgttgcagggagaatagtgcactagtgccggtaacacagctgttgaggacagcgaagcaggtccttgcattcccagactccaagcagcgactggagattatacaccatgtatatgttaggcttgttgctcgagcatcagaatgcgaggagtcgtacagagtattagatcaatgttcagtagaactgggtaagaaaattgaagaaatcctgcagaaacaaacaagcattgatgcgtcagctcctcagtctgatattgaggatgtaacaatatccttgtctgcgaatggtactgacaatgaatcagaaagagcactggattattcaagcagcacaagaccgaagcgacgaaaaaagaaaggtcgtaatgctaaaagccaacgaaaaagttgtattgagaaaggtttacaaaaaaccaagaaagtgcaaccagaacaatccccaatacaatataccatgttggatgctgctcaacctggaaatgttctatttcagggtcttgacatttctaatccatttccaatggggcaactgaattatggaggagtgcagtcacaaccaggcctatgcccaagcttacctactgtatcaagagaacttggttttgctgcatacctttctcagccatcaagtaacaatcaacataatcagcagggtttgtag
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| Protein seq | MCNAIGCCRENSALVPVTQLLRTAKQVLAFPDSKQRLEIIHHVYVRLVARASECEESYRVLDQCSVELGKKIEEILQKQTSIDASAPQSDIEDVTISLSANGTDNESERALDYSSSTRPKRRKKKGRNAKSQRKSCIEKGLQKTKKVQPEQSPIQYTMLDAAQPGNVLFQGLDISNPFPMGQLNYGGVQSQPGLCPSLPTVSRELGFAAYLSQPSSNNQHNQQGL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0020460 | OsCMeo_02g0020460.01 | Chr02 | 20405517 | 20410224 | - | NAM | ||
| CDS seq | atgtgcaacgcgattgggtgttgcagggagaatagtgcactagtgccggtaacacagctgttgaggacagcgaagcaggtccttgcattcccagactccaagcagcgactggagattatacaccatgtatatgttaggcttgttgctcgagcatcagaatgcgaggagtcgtacagagtattagatcaatgttcagtagaactgggtaagaaaattgaagaaatcctgcagaaacaaacaagcattgatgcgtcagctcctcagtctgatattgaggatgtaacaatatccttgtctgcgaatggtactgacaatgaatcagaaagagcactggattattcaagcagcacaagaccgaagcgacgaaaaaagaaaggtcgtaatgctaaaagccaacgaaaaagttgtattgagaaaggtttacaaaaaaccaagaaagtgcaaccagaacaatccccaatacaatataccatgttggatgctgctcaacctggaaatgttctatttcagggtcttgacatttctaatccatttccaatggggcaactgaattatggaggagtgcagtcacaaccaggcctatgcccaagcttacctactgtatcaagagaacttggttttgctgcatacctttctcagccatcaagtaacaatcaacataatcagcagggtttgtag
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| Protein seq | MCNAIGCCRENSALVPVTQLLRTAKQVLAFPDSKQRLEIIHHVYVRLVARASECEESYRVLDQCSVELGKKIEEILQKQTSIDASAPQSDIEDVTISLSANGTDNESERALDYSSSTRPKRRKKKGRNAKSQRKSCIEKGLQKTKKVQPEQSPIQYTMLDAAQPGNVLFQGLDISNPFPMGQLNYGGVQSQPGLCPSLPTVSRELGFAAYLSQPSSNNQHNQQGL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.245919 | 0.000000 | 3.136085 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0542200 | RBH | 0.863786 | 1.080612 | 2.627480 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g33750 | RBH | 0.505031 | 0.761512 | 0.666504 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0542200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0020390 | RBH | 0.417426 | 0.000000 | 1.864284 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0020490 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013750 | RBH | 0.865129 | 3.283901 | 8.762901 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0020160 | RBH | 4.929585 | 0.000000 | 10.229586 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019860 | RBH | 0.699184 | 0.168108 | 0.912601 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0354300 | RBH | 2.3297855 | 6.857189 | 8.73943 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G020510 | RBH | 0.301507 | 0.0 | 2.999460 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0020210 | RBH | 0.977216 | 6.816539 | 7.867122 |
