Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsCMeo_02g0018130 | OGI:02051150 | 6/16 | CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | Chr02:17810631-17815421 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttattggttttttgtgtgcaatgtctcacggaatggccttcgtctctttgatggagctccttttgccctaatctcatcaggatcacagaccctcttctctaatggctagttactagatgaaaagtgagttggcataggagcaaaatctccagccacgatgttctcatgggatgacgatcctttatccaaaatcccatttaagaaatccatcgctttttctgtctgctcagggttcctagcatcactacccagatttcggaggctacgaaaacgaaccatgtgttcagaccacacattaggatcggtattcctgtctgacctaaatgccgccattgctcccattgtccacctatccacgacacaataacgagggatggtgtcaaaaccaaggaacttgagtacaacaaatatgtgtgagcaagggatgtcttcgcactccatcttccggcagtgacattccacaccttccaacgcctggcctttaaaagtaaccctcacttcatcccacacctcattatcgtccttcaaaccaacaacatacagtgacgaaccatcttgattagtcccacttatgacttcgagtccagcaattagccatatctgtgcacggactttcttgaacacgattgttgtgaatatacgggcagtgtctttctccaatgggtcggcgtctattctacaaaaagggatcgaattggtacacttagcgtccaactgagcctccttcttacgcagacgttgtatgcacaacttaacatgtttgactaagcacattagtgacatatttctcttcagaagggtgtgaagctttgagttcagtgactcactatgttggttgctgcgcatacccaacaagtatttcacatctgtataggtagcagcccacttctccctaagtcggtacatcagagcgatccattgtccatttcccgtgcctccattctccttaaaatcagcccaacgtctctcgaactcctcctcatccatactctcataaattaattttcttagctcatcgagttttggcttacgaaggtgacgactcatattctcctctatatgccaagtacacaatctatggtaagcacccggcattaccttactgatagcctttgccattgctaggtcgccatcggtaattaatgattttggatgcacttgacgtattgcctccaaaaaagtctcaaggagctaacagtaagagttgacagactcattggatagaattccgcacccaaaaattgttgtacttatatggtggttaactcctatgaaaggaatggaaggaagattgtacttgtttacccggtaagtgctatcgaaaataacaacaccaccaaaagcagcatagtctaaacgagattcaacatctgcccaaaacacattcctaagacgcccttcctcatctgtggtgtatttgaagaaaaattctggatcttcttcttgcttccttgttagatatttcaacacatcttcagcatcacgacccttgatattcttcatctcgtaccgagtaaagaaattataaaggtccttcatcacaaaactaacctcttccgactcatcgtggttattctccataacctccatgatttgaaagggcctaaggccactcatgcgaagctcgatcgcttgggctttcttagaatcagtcatcacacgatgaactcctaaaaaagcatcatggtcaggatttgcaagttcgagcgtatgttggttatcaaactccttaacaaaccacatccccttctgctcgttccgctcaatctcaagcttagctaagcaaccacagcgggtcagtgcccgtggctcccttttccactctgtcctctcaaagtgcttcaactccctgtactctttacatgagcatacgaattgcctccatataatctcaccgtccttccgcttcaagttgtttttcctcacactgaaacccttaccctttgcatagtctaaatagaatttgtaactttcctcctcgctttaaaaaaccacagtacccatcattttatactcttcctgatcctctaggctcacatagctcgaagtcattatgtcagacctcacctacggaaaagtaaaaaaaacaaacagaacaagcacccaaatataaccttacgtcctttatacctcataagaatAaaaaaaaagaacaaccgtcgcctgcataaatacattgccaatccaaagaaaacacgggaaattcacattaggcaattcagttactgtaggactgcatataatatctgaggttcataacagggcagagtaaggatgctgattctataaataatctaaatgattacaagcttacttgcatccagcgcttggcactcaacatctaagtctccaaggtaaaatgggtccacctagtactgtaatacaatccttttaagtctgcacttttggggaaaaacatttgtttgggaaaagacaaatcatgattgtttaatttatttttcactattgttttgtgggagtgggtgggtagttcacaatttcatctatccagttcaatcagtgcaccttcacattcagaattcaaatgggtttgagaaagttctacaaatatgtcttaataaattcacagataaaagaaaacatcttttacaaaaactgcaagaaataatttcatcgcaagtgtacttctgaaatacatgaatttctcaagtgatttaaagtgcattgtgttgccaaaaaaatatattagctaaaacaaaattaaaccaagacatgacacattaattgtcaccttgttttcttgtgcagaacaaaaaccaaattccacttttgttgggacctaactacacaaactgttggtacatagaaagcttgcccaaaattaaagattgaccagtggaagtaatagatgaagaagagtacctcactaaacacaggatgacaggaacgtgtgacttcttcccagcatcgtcaagcagcacctgtagtgatcaacccctgcaaggcatggagcaaaattgaatcacacctgtagtgatcaacacatgcactaataaattaatacaatgcactactactagtactgatgaactagctggaaatgctggatgcattaaccagttgacaaggcaagcatttgggagaaaagatcaaagatcaattgcacaagatatgatttaacttgccacctttgctgaggtttaatgctagacttatcagtaacacatcaattgctgcaaactgttttgagtggaatttgaagtgacaggtgtatttcatttgcagctcgagaccaaaattattgttcagttttctttcaaaaaaatattgttgttcagtttcatcgtttatgcttacaactcaacatacaaaatcgattaaatatatctcctattcaatttaacatcagctagtgtagattctctagtatagttatccatttacaagcaagttgatgcatttatagaggaaaaattcagacaagttcaccactgagtagaggaaggggaacagaaagtcaggatgggggtgggatgggaggagtggatacctgatgatttcgccgcgcccagctgctggcagcgccgccgcctgcgtcggacagatgcgacgcgccgcgccaccggccgcgacgccgcctgccgggaggaatacccgccgggcgcacagccgcctgccggtgcctgcctccgaccagatgtgaaccgaagggggagggtggagagggcggggccgacggacggcgacggagggggcgagggagatgtaaggcgatggagggagcggagacggcggcgagggtgggcagggcgggggaggcggacggcgacggaggggagcggagaaggcgacgcaggcggaggagacggccggcaactaaggaggcggacaaggcggcgacggcgagcgataaggacggcgacgaaggcaaggcggcgaggccaggggaggaatagcgcgacagagtccacacctgcaatgcgaaccgatgcgaacatcccataccaaaattacccataaaggatattaggagattacttaactaccctttaaaataaactatacagattaattctactcggagtagaatacttcaagtatattgcaccggagcatcgctgaattttaaaaggctgcatatatccgattggatgtagagtccgggtaaaaaaacccttctctaaaaaaaatacagctgatttattaaccttgcaattttcatttggagagctataaatcgaaaccttaaaagagttgaacaacctcctagtagccaagtaattcatgcaagaaagcaaagagatgtatcttacaactgattggctcagtgacgatggaagcatggtggtgtgagtggtagcgagagtacagggcatgatggtgcagtgcacgatggaaccagtaggatagaaactcaaccgggccagcgtgcatcaggaccattacaagggcgccgtctcttctccttagtggcattccttgcccgagtggcatcaacaggaggactaggtattccaagtggctgttaagatgaaggtatcatccctgcaaaacaaaattaattttcttggtttagatttttactgaccatttgtctgaactcaaaagaattaaagcatacacgaacttggcatgtccatataaaaaatcatatatagagatagaactagaggagattttgcaggtgagatacatatataccagttgttctcaccatccactttgctcgaattcaataccacgttctacaatccggcgccgattgccacgggcatccatgagccgggagatggttagccagacctggctatggagaatccttagcaacat
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| CDS seq | atgttgctaaggattctccatagccaggtctggctaaccatctcccggctcatggatgcccgtggcaatcggcgccggattgtagaacgtggtattgaattcgagcaaagtggatgccacttggaatacctagtcctcctgttgatgccactcgggcaaggaatgccactaaggagaagagacggcgcccttgtaatggtcctgatgcacgctggcccggttgagtttctatcctactggttccatcgtgcactgcaccatcatgccctgtactctcgctaccactcacaccaccatgcttccatcgtgaggtctgacataatgacttcgagctatgtgagcctagaggatcaggaagacgaggaggaaagttacaaattctatttagactatgcaaagggtaagggtttcagtgtgaggaaaaacaacttgaagcggaaggacggtgagattatatggaggcaattcgtatgctcatgtaaagagtacagggagttgaagcactttgagaggacagagtggaaaagggagccacgggcactgacccgctgtggttgcttagctaagcttgagattgagcggaacgagcagaaggggatgtggtttgttaaggagtttgataaccaacatacgctcgaacttgcaaatcctgaccatgatgcttttttaggagttcatcgtgtgatgactgattctaagaaagcccaagcgatcgagcttcgcatgaacgccgacccattggagaaagacactgcccgtatattcacaacaatcgtgttcaagaaagtccgtgcacagatatggctaattgctggactcgaagtcataagtgggactaatcaagatggttcgtcactgtatgttgttggtttgaaggacgataatgaggtgtgggatgaagtgagggttacttttaaaggccaggcgttggaaggtgtggaatgtcactgccggaagatggagtgcgaagacatcccttgctcacacatatttgttgtactcaagttccttggttttgacaccatccctcgttattgtgtcgtggataggtggacaatgggagcaatggcggcatttaggtcagacaggaataccgatcctaatgtgtggtctgaacacatggttcgttttcgtagcctccgaaatctgggtagtgatgctaggaaccctgagcagacagaaaaagcgatggatttcttaaatgggattttggataaaggatcgtcatcccatgagaacatcgtggctggagattttgctcctatgccaactcacttttcatctaagaagagggtctgtgatcctgatgagattagggcaaaaggagctccatcaaagagacgaaggccattccgtgagacattgcacacaaaaaaccaataa
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| Protein seq | MLLRILHSQVWLTISRLMDARGNRRRIVERGIEFEQSGCHLEYLVLLLMPLGQGMPLRRRDGALVMVLMHAGPVEFLSYWFHRALHHHALYSRYHSHHHASIVRSDIMTSSYVSLEDQEDEEESYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSCKEYRELKHFERTEWKREPRALTRCGCLAKLEIERNEQKGMWFVKEFDNQHTLELANPDHDAFLGVHRVMTDSKKAQAIELRMNADPLEKDTARIFTTIVFKKVRAQIWLIAGLEVISGTNQDGSSLYVVGLKDDNEVWDEVRVTFKGQALEGVECHCRKMECEDIPCSHIFVVLKFLGFDTIPRYCVVDRWTMGAMAAFRSDRNTDPNVWSEHMVRFRSLRNLGSDARNPEQTEKAMDFLNGILDKGSSSHENIVAGDFAPMPTHFSSKKRVCDPDEIRAKGAPSKRRRPFRETLHTKNQ |
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| Function | Very-long-chain aldehyde decarbonylase GL1-5 [UniProtKB/Swiss-Prot:B8BHF1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsCMeo_02g0018130 | OsCMeo_02g0018130.01 | Chr02 | 17810631 | 17815421 | - | NAM | ||
| CDS seq | atgttgctaaggattctccatagccaggtctggctaaccatctcccggctcatggatgcccgtggcaatcggcgccggattgtagaacgtggtattgaattcgagcaaagtggatgccacttggaatacctagtcctcctgttgatgccactcgggcaaggaatgccactaaggagaagagacggcgcccttgtaatggtcctgatgcacgctggcccggttgagtttctatcctactggttccatcgtgcactgcaccatcatgccctgtactctcgctaccactcacaccaccatgcttccatcgtgaggtctgacataatgacttcgagctatgtgagcctagaggatcaggaagacgaggaggaaagttacaaattctatttagactatgcaaagggtaagggtttcagtgtgaggaaaaacaacttgaagcggaaggacggtgagattatatggaggcaattcgtatgctcatgtaaagagtacagggagttgaagcactttgagaggacagagtggaaaagggagccacgggcactgacccgctgtggttgcttagctaagcttgagattgagcggaacgagcagaaggggatgtggtttgttaaggagtttgataaccaacatacgctcgaacttgcaaatcctgaccatgatgcttttttaggagttcatcgtgtgatgactgattctaagaaagcccaagcgatcgagcttcgcatgaacgccgacccattggagaaagacactgcccgtatattcacaacaatcgtgttcaagaaagtccgtgcacagatatggctaattgctggactcgaagtcataagtgggactaatcaagatggttcgtcactgtatgttgttggtttgaaggacgataatgaggtgtgggatgaagtgagggttacttttaaaggccaggcgttggaaggtgtggaatgtcactgccggaagatggagtgcgaagacatcccttgctcacacatatttgttgtactcaagttccttggttttgacaccatccctcgttattgtgtcgtggataggtggacaatgggagcaatggcggcatttaggtcagacaggaataccgatcctaatgtgtggtctgaacacatggttcgttttcgtagcctccgaaatctgggtagtgatgctaggaaccctgagcagacagaaaaagcgatggatttcttaaatgggattttggataaaggatcgtcatcccatgagaacatcgtggctggagattttgctcctatgccaactcacttttcatctaagaagagggtctgtgatcctgatgagattagggcaaaaggagctccatcaaagagacgaaggccattccgtgagacattgcacacaaaaaaccaataa
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| Protein seq | MLLRILHSQVWLTISRLMDARGNRRRIVERGIEFEQSGCHLEYLVLLLMPLGQGMPLRRRDGALVMVLMHAGPVEFLSYWFHRALHHHALYSRYHSHHHASIVRSDIMTSSYVSLEDQEDEEESYKFYLDYAKGKGFSVRKNNLKRKDGEIIWRQFVCSCKEYRELKHFERTEWKREPRALTRCGCLAKLEIERNEQKGMWFVKEFDNQHTLELANPDHDAFLGVHRVMTDSKKAQAIELRMNADPLEKDTARIFTTIVFKKVRAQIWLIAGLEVISGTNQDGSSLYVVGLKDDNEVWDEVRVTFKGQALEGVECHCRKMECEDIPCSHIFVVLKFLGFDTIPRYCVVDRWTMGAMAAFRSDRNTDPNVWSEHMVRFRSLRNLGSDARNPEQTEKAMDFLNGILDKGSSSHENIVAGDFAPMPTHFSSKKRVCDPDEIRAKGAPSKRRRPFRETLHTKNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0621300 | SBH | 0.730189 | 0.607753 | 3.944597 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g29640 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0621300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0018080 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0018230 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0003460 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0016390 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0017840 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0292100 | RBH | 0.142101 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0011330 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0312600 | RBH | 0.1606675 | 0 | 0.0491805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0023930 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0017700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0010860 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0015470 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0023640 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008650 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0023930 | SBH | 0.0 | 0.0 | 0.0 |
